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The map label for this gene is yhdW [H]

Identifier: 126699271

GI number: 126699271

Start: 1939729

End: 1941573

Strand: Direct

Name: yhdW [H]

Synonym: CD1666

Alternate gene names: 126699271

Gene position: 1939729-1941573 (Clockwise)

Preceding gene: 126699270

Following gene: 126699272

Centisome position: 45.21

GC content: 23.2

Gene sequence:

>1845_bases
ATGCAAAAGAGAATTTTAAGAAATTTTATATTTACGGGTAAAAATATTTTAAGTAAACTTGTTTTTATAATAAAATATAA
TTTTAGTACATTAATTTTATTTGAATTATTTCATAAAGGATTAGCCTTATTTTTTATATGGCCATCTATTAGATATATAT
TTGATATTTTAATAAAAAGTTTACATATAGTCTACCTAAATATGGATAATTTTATAAAAGTTTTGACCAATCCCATGTCA
ATAGTTCTGATAATACTATCAGTTATAATACTAGCTTTTTATGCATTTTTTGAATTTACCTCTGTAATTATTTGTTTAAA
TAAATCGATAAAATATGAAAAAATAGGGTTATTTGAACTCTTTAAAATATCATTTGAGAACTCTATAAAATTGTTATATC
CTAAAAATATACTATTATTTATATTTGTGATATTAATAATTCCATTAGTAAATACAGTTTTAATTTCAGGGTTTATAGGA
AAAATACAAATACCAGAGTACATATTAGATTATATAAAGTCTGATATAATTTTAAATATAATCTATATGATTTTTCTTTT
AATAATATATATTTCGGTTATTAGATGGATTTTTAGCATTCATGAGATAACTTTAAATACAGAAAATTTTAAAAGAGCAA
GAAAAGAAAGTGTTAATCTTATAAAGGGAAAGATTATAAGAACAATTATTTATTCATTAATATTATCTTTAGTAGTAGCT
ATTATTGGATATGCGATTTATCATAGTGGAATTATATTTATAGGCATATGGACTAAATATTGTACTGATATGGAATTTTT
GAAGAATGTATTTATAAATAGATGTATTGCATTTGAAGAATATTTTAGATTGATTTTATCAATATTCATTTTTATATTGG
ACATTGGATTTATCTCAGCAACTTATTATCAATATAAAGGAGTAAATATTTCTAAAAATAATATTAAAAAAGAGAAAAAA
TCTATATCAAAAATTGTTTTTAATTTAGTATTAATATTATTGATTTCTTATATAGAGTCAGTTGCATTTTCTTCACATAT
AAATGGTATGTTTAATACGTCATTTTCATTTTATACAACAGCAATTGCTCATAGAGCAGGAGCTGAAATGGCTCCAGAGA
ATACTTTGGCAGCAATAGAAGAAGCTTCAAATGCTAAAGCTGATTATGCAGAAATAGATGTTCAAGAAACTAAAGATGGA
GAACTTATTGTACTTCATGATTCAAACTTTAAGAGAACTACAGGAGTAGATAAAAATGTTTGGGATGTAAATTATAATGA
AGTAAAGACATATGATGCGGGAAGCTTTTATTATTATGGAAAAGGTTATTATGATGAAAAGTTTGTTGGGGAAAAGATAC
CAACACTCAAAGAAATGATAAAATATTCTAAAGGTAAGGTGAAATTATTAATAGAAATAAAACTTAATGGACATGAAAAG
GGAGACGTAGTAAAAAAAGTTGTTCAGTTAATTAAAGAAAATAATTTTGAAAATCAATGTATAGTTGCATCTATGGATAA
AACTATATTACAAAAAGTAAAAAAACTGGATGAGAATTTATTGACATGCTATTTTATGGCAATTGCATATGGTGATTTTT
CAAAGTTAAATTATGTTGATATATATGGAATTGAATCAACTTTTGTTAATAAAACAGTAGTAGAAAAGATTCATAAAATG
AACAAAAAAATCTTCGTTTGGACTGTTAATAGTGACAGTTTAATTGAGAAAATGCTTGACCTAAATGTAGATAGTATTAT
TACAGATAATCCATACCTTATAGAGAGTGCAATTTATTGGAAGAAAAATGGATTTATTAGTCAAGTGTCAGATTATTTAT
TTTAA

Upstream 100 bases:

>100_bases
TTGCATTTATACATCATAACTTGGAATAATACATATTAATGTTCTAAATGTATTTAAAACATATGATAAAATTAGAACAA
ATAGATACAAGGAGATAAAA

Downstream 100 bases:

>100_bases
ATATTCTATAATTGTATTATCCAGTAAAAGAGATATTATTAAAATCAATAATATCTCTTTTTAACATAAATAAGGTTGTT
AAATTAAGGTTATTCTTATA

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 614; Mature: 614

Protein sequence:

>614_residues
MQKRILRNFIFTGKNILSKLVFIIKYNFSTLILFELFHKGLALFFIWPSIRYIFDILIKSLHIVYLNMDNFIKVLTNPMS
IVLIILSVIILAFYAFFEFTSVIICLNKSIKYEKIGLFELFKISFENSIKLLYPKNILLFIFVILIIPLVNTVLISGFIG
KIQIPEYILDYIKSDIILNIIYMIFLLIIYISVIRWIFSIHEITLNTENFKRARKESVNLIKGKIIRTIIYSLILSLVVA
IIGYAIYHSGIIFIGIWTKYCTDMEFLKNVFINRCIAFEEYFRLILSIFIFILDIGFISATYYQYKGVNISKNNIKKEKK
SISKIVFNLVLILLISYIESVAFSSHINGMFNTSFSFYTTAIAHRAGAEMAPENTLAAIEEASNAKADYAEIDVQETKDG
ELIVLHDSNFKRTTGVDKNVWDVNYNEVKTYDAGSFYYYGKGYYDEKFVGEKIPTLKEMIKYSKGKVKLLIEIKLNGHEK
GDVVKKVVQLIKENNFENQCIVASMDKTILQKVKKLDENLLTCYFMAIAYGDFSKLNYVDIYGIESTFVNKTVVEKIHKM
NKKIFVWTVNSDSLIEKMLDLNVDSIITDNPYLIESAIYWKKNGFISQVSDYLF

Sequences:

>Translated_614_residues
MQKRILRNFIFTGKNILSKLVFIIKYNFSTLILFELFHKGLALFFIWPSIRYIFDILIKSLHIVYLNMDNFIKVLTNPMS
IVLIILSVIILAFYAFFEFTSVIICLNKSIKYEKIGLFELFKISFENSIKLLYPKNILLFIFVILIIPLVNTVLISGFIG
KIQIPEYILDYIKSDIILNIIYMIFLLIIYISVIRWIFSIHEITLNTENFKRARKESVNLIKGKIIRTIIYSLILSLVVA
IIGYAIYHSGIIFIGIWTKYCTDMEFLKNVFINRCIAFEEYFRLILSIFIFILDIGFISATYYQYKGVNISKNNIKKEKK
SISKIVFNLVLILLISYIESVAFSSHINGMFNTSFSFYTTAIAHRAGAEMAPENTLAAIEEASNAKADYAEIDVQETKDG
ELIVLHDSNFKRTTGVDKNVWDVNYNEVKTYDAGSFYYYGKGYYDEKFVGEKIPTLKEMIKYSKGKVKLLIEIKLNGHEK
GDVVKKVVQLIKENNFENQCIVASMDKTILQKVKKLDENLLTCYFMAIAYGDFSKLNYVDIYGIESTFVNKTVVEKIHKM
NKKIFVWTVNSDSLIEKMLDLNVDSIITDNPYLIESAIYWKKNGFISQVSDYLF
>Mature_614_residues
MQKRILRNFIFTGKNILSKLVFIIKYNFSTLILFELFHKGLALFFIWPSIRYIFDILIKSLHIVYLNMDNFIKVLTNPMS
IVLIILSVIILAFYAFFEFTSVIICLNKSIKYEKIGLFELFKISFENSIKLLYPKNILLFIFVILIIPLVNTVLISGFIG
KIQIPEYILDYIKSDIILNIIYMIFLLIIYISVIRWIFSIHEITLNTENFKRARKESVNLIKGKIIRTIIYSLILSLVVA
IIGYAIYHSGIIFIGIWTKYCTDMEFLKNVFINRCIAFEEYFRLILSIFIFILDIGFISATYYQYKGVNISKNNIKKEKK
SISKIVFNLVLILLISYIESVAFSSHINGMFNTSFSFYTTAIAHRAGAEMAPENTLAAIEEASNAKADYAEIDVQETKDG
ELIVLHDSNFKRTTGVDKNVWDVNYNEVKTYDAGSFYYYGKGYYDEKFVGEKIPTLKEMIKYSKGKVKLLIEIKLNGHEK
GDVVKKVVQLIKENNFENQCIVASMDKTILQKVKKLDENLLTCYFMAIAYGDFSKLNYVDIYGIESTFVNKTVVEKIHKM
NKKIFVWTVNSDSLIEKMLDLNVDSIITDNPYLIESAIYWKKNGFISQVSDYLF

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=164, Percent_Identity=28.0487804878049, Blast_Score=83, Evalue=8e-16,
Organism=Homo sapiens, GI260763878, Length=164, Percent_Identity=31.7073170731707, Blast_Score=78, Evalue=3e-14,
Organism=Homo sapiens, GI260763880, Length=164, Percent_Identity=31.7073170731707, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI260763876, Length=159, Percent_Identity=32.7044025157233, Blast_Score=77, Evalue=5e-14,
Organism=Escherichia coli, GI1789858, Length=243, Percent_Identity=27.9835390946502, Blast_Score=86, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17542344, Length=230, Percent_Identity=23.9130434782609, Blast_Score=76, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 71237; Mature: 71237

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKRILRNFIFTGKNILSKLVFIIKYNFSTLILFELFHKGLALFFIWPSIRYIFDILIKS
CCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHH
LHIVYLNMDNFIKVLTNPMSIVLIILSVIILAFYAFFEFTSVIICLNKSIKYEKIGLFEL
HHEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHH
FKISFENSIKLLYPKNILLFIFVILIIPLVNTVLISGFIGKIQIPEYILDYIKSDIILNI
HHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHH
IYMIFLLIIYISVIRWIFSIHEITLNTENFKRARKESVNLIKGKIIRTIIYSLILSLVVA
HHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIGYAIYHSGIIFIGIWTKYCTDMEFLKNVFINRCIAFEEYFRLILSIFIFILDIGFISA
HHHHHHHHCCEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYYQYKGVNISKNNIKKEKKSISKIVFNLVLILLISYIESVAFSSHINGMFNTSFSFYTT
HHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHH
AIAHRAGAEMAPENTLAAIEEASNAKADYAEIDVQETKDGELIVLHDSNFKRTTGVDKNV
HHHHHCCCCCCCCHHHHHHHHHCCCCCCHHEEECEECCCCCEEEEECCCCCCCCCCCCCE
WDVNYNEVKTYDAGSFYYYGKGYYDEKFVGEKIPTLKEMIKYSKGKVKLLIEIKLNGHEK
EECCCCCEEEEECCCEEEECCCCCCCHHHCCCCHHHHHHHHCCCCCEEEEEEEEECCCCC
GDVVKKVVQLIKENNFENQCIVASMDKTILQKVKKLDENLLTCYFMAIAYGDFSKLNYVD
HHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
IYGIESTFVNKTVVEKIHKMNKKIFVWTVNSDSLIEKMLDLNVDSIITDNPYLIESAIYW
EEECHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCEECCCCCEEEHEEEE
KKNGFISQVSDYLF
ECCCCHHHHHHHCC
>Mature Secondary Structure
MQKRILRNFIFTGKNILSKLVFIIKYNFSTLILFELFHKGLALFFIWPSIRYIFDILIKS
CCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHH
LHIVYLNMDNFIKVLTNPMSIVLIILSVIILAFYAFFEFTSVIICLNKSIKYEKIGLFEL
HHEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHH
FKISFENSIKLLYPKNILLFIFVILIIPLVNTVLISGFIGKIQIPEYILDYIKSDIILNI
HHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHH
IYMIFLLIIYISVIRWIFSIHEITLNTENFKRARKESVNLIKGKIIRTIIYSLILSLVVA
HHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIGYAIYHSGIIFIGIWTKYCTDMEFLKNVFINRCIAFEEYFRLILSIFIFILDIGFISA
HHHHHHHHCCEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYYQYKGVNISKNNIKKEKKSISKIVFNLVLILLISYIESVAFSSHINGMFNTSFSFYTT
HHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHH
AIAHRAGAEMAPENTLAAIEEASNAKADYAEIDVQETKDGELIVLHDSNFKRTTGVDKNV
HHHHHCCCCCCCCHHHHHHHHHCCCCCCHHEEECEECCCCCEEEEECCCCCCCCCCCCCE
WDVNYNEVKTYDAGSFYYYGKGYYDEKFVGEKIPTLKEMIKYSKGKVKLLIEIKLNGHEK
EECCCCCEEEEECCCEEEECCCCCCCHHHCCCCHHHHHHHHCCCCCEEEEEEEEECCCCC
GDVVKKVVQLIKENNFENQCIVASMDKTILQKVKKLDENLLTCYFMAIAYGDFSKLNYVD
HHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
IYGIESTFVNKTVVEKIHKMNKKIFVWTVNSDSLIEKMLDLNVDSIITDNPYLIESAIYW
EEECHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCEECCCCCEEEHEEEE
KKNGFISQVSDYLF
ECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]