| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699190
Identifier: 126699190
GI number: 126699190
Start: 1838809
End: 1839993
Strand: Direct
Name: 126699190
Synonym: CD1586
Alternate gene names: NA
Gene position: 1838809-1839993 (Clockwise)
Preceding gene: 126699189
Following gene: 126699191
Centisome position: 42.86
GC content: 24.64
Gene sequence:
>1185_bases ATGGATAGAAAAAAGGTAATAGTACAAATTTTTACTGGAGGTTTTAAGGCTAAAGAAATAAAGTTTAATGATATAAAATG TAAACTACTAGAATTATTGGACTGTATTGATATAGAAAAGGTTATCATGGGATGGAGTGTAGATGAAGAATTATATGTAG AAACTAAAAAACTATTAAATAAATATAATGTTGAACTATATCTTTGGTTGCCATGTTTTTCTGAAATAGGATTACTTGAA AAAAGTAATTTACTAATTGATTATATGGGGAAGGAAGTCAAGGGCTATGCTTTACAAGAGGATGAAAATTTTGAGTTTTA TTGCCCAAATAATAAGGAAAATATAAAAAATATAAAGAAAATATATAGTACTTATTTTAGTGATATTAAATTTGATGGAA TTTTTTTAGATAAAATAAGGTATGGTTCTTTTTCGAATAAACTAAATGGTGTTTTTAATTGTTTTTGTAAAGATTGTTTA AATATATATGAAAAAAATAATATTGATAAAGAGTCGTTAATGAGAGAAATGAATAATGTGTCTAAGGGAGTTATAGATAA TGAAGATACTCCATTTGGTATAACAGAATACATTAATGGAAAATACAAATTTAAAAATAAAATATGGGAAGATTTTTTTG AAACAAAAAATCAAAATATATACAAGGCATTATTAGAGATAAGTAGTTATTTTAAAAGTAAGGGATTGAAAATAGGTATA GATACTTTTTCTCCTTTTATTTCTTACTTTACAGGTCAAGATTTAGAAAAATTACAAGAAGTAGCAGATTTTATAAAACC AATGATGTATAGAACTACAAAAGCTCCAGCTGGTTTACCATTTGAATTTGAAAGGTTTATTGATGAATCCATACATAAGA ATAAAGAGATTGGAAAAAGAAATTTCTTAGATATTTTAGGAATTAAGGAGTATGAAGGAGATGTATATCCTATAGAATTT GTACTAGAGGAAATCGATTTTATGACAAGAAATCTTAATAAAGATATATATGTAGGAGTTGAAATAAATAAAAAGGAAAT TATATCTCCTGTTACACCTAAGTACATAAGTGAAAATATTTCAAATATAAATAAGACAACAGTAAAAGGATATGTTTTAT CTTGGGATTTGTTGTCAGCACCAAAAGAAAATATTGATGAAATTATAAAATGGTTTCGGAATTAG
Upstream 100 bases:
>100_bases GAAAATACAGATAAAAATTTAAAATTTATATCTCAAGAAAATCAGCCAGTATATGGGGGGATAAGACTTGCTATGGCATT AGCTAATAGGAGGGTCAAGC
Downstream 100 bases:
>100_bases TGAGGTGATAAAGTGAGTAAGATATTGGAAATGCAACAAATATATAAAAGTTTTGGAAAGGTAGATGTTTTAAAAGGGAT AAATTTTGAGTTAGAAAAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 394; Mature: 394
Protein sequence:
>394_residues MDRKKVIVQIFTGGFKAKEIKFNDIKCKLLELLDCIDIEKVIMGWSVDEELYVETKKLLNKYNVELYLWLPCFSEIGLLE KSNLLIDYMGKEVKGYALQEDENFEFYCPNNKENIKNIKKIYSTYFSDIKFDGIFLDKIRYGSFSNKLNGVFNCFCKDCL NIYEKNNIDKESLMREMNNVSKGVIDNEDTPFGITEYINGKYKFKNKIWEDFFETKNQNIYKALLEISSYFKSKGLKIGI DTFSPFISYFTGQDLEKLQEVADFIKPMMYRTTKAPAGLPFEFERFIDESIHKNKEIGKRNFLDILGIKEYEGDVYPIEF VLEEIDFMTRNLNKDIYVGVEINKKEIISPVTPKYISENISNINKTTVKGYVLSWDLLSAPKENIDEIIKWFRN
Sequences:
>Translated_394_residues MDRKKVIVQIFTGGFKAKEIKFNDIKCKLLELLDCIDIEKVIMGWSVDEELYVETKKLLNKYNVELYLWLPCFSEIGLLE KSNLLIDYMGKEVKGYALQEDENFEFYCPNNKENIKNIKKIYSTYFSDIKFDGIFLDKIRYGSFSNKLNGVFNCFCKDCL NIYEKNNIDKESLMREMNNVSKGVIDNEDTPFGITEYINGKYKFKNKIWEDFFETKNQNIYKALLEISSYFKSKGLKIGI DTFSPFISYFTGQDLEKLQEVADFIKPMMYRTTKAPAGLPFEFERFIDESIHKNKEIGKRNFLDILGIKEYEGDVYPIEF VLEEIDFMTRNLNKDIYVGVEINKKEIISPVTPKYISENISNINKTTVKGYVLSWDLLSAPKENIDEIIKWFRN >Mature_394_residues MDRKKVIVQIFTGGFKAKEIKFNDIKCKLLELLDCIDIEKVIMGWSVDEELYVETKKLLNKYNVELYLWLPCFSEIGLLE KSNLLIDYMGKEVKGYALQEDENFEFYCPNNKENIKNIKKIYSTYFSDIKFDGIFLDKIRYGSFSNKLNGVFNCFCKDCL NIYEKNNIDKESLMREMNNVSKGVIDNEDTPFGITEYINGKYKFKNKIWEDFFETKNQNIYKALLEISSYFKSKGLKIGI DTFSPFISYFTGQDLEKLQEVADFIKPMMYRTTKAPAGLPFEFERFIDESIHKNKEIGKRNFLDILGIKEYEGDVYPIEF VLEEIDFMTRNLNKDIYVGVEINKKEIISPVTPKYISENISNINKTTVKGYVLSWDLLSAPKENIDEIIKWFRN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46317; Mature: 46317
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: PS00037 MYB_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRKKVIVQIFTGGFKAKEIKFNDIKCKLLELLDCIDIEKVIMGWSVDEELYVETKKLLN CCCCEEEEEEECCCCEECEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH KYNVELYLWLPCFSEIGLLEKSNLLIDYMGKEVKGYALQEDENFEFYCPNNKENIKNIKK HHCCEEEEEECCHHHCCCCCCCCCHHEECCCCCCCCEECCCCCEEEECCCCHHHHHHHHH IYSTYFSDIKFDGIFLDKIRYGSFSNKLNGVFNCFCKDCLNIYEKNNIDKESLMREMNNV HHHHHHHCCCCCCEEEECEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH SKGVIDNEDTPFGITEYINGKYKFKNKIWEDFFETKNQNIYKALLEISSYFKSKGLKIGI HCCCCCCCCCCCCHHHHHCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEH DTFSPFISYFTGQDLEKLQEVADFIKPMMYRTTKAPAGLPFEFERFIDESIHKNKEIGKR HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHCCCH NFLDILGIKEYEGDVYPIEFVLEEIDFMTRNLNKDIYVGVEINKKEIISPVTPKYISENI HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCCCCHHHHHHHH SNINKTTVKGYVLSWDLLSAPKENIDEIIKWFRN HCCCHHHHEEEEEEEHHHHCCCCHHHHHHHHHCC >Mature Secondary Structure MDRKKVIVQIFTGGFKAKEIKFNDIKCKLLELLDCIDIEKVIMGWSVDEELYVETKKLLN CCCCEEEEEEECCCCEECEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH KYNVELYLWLPCFSEIGLLEKSNLLIDYMGKEVKGYALQEDENFEFYCPNNKENIKNIKK HHCCEEEEEECCHHHCCCCCCCCCHHEECCCCCCCCEECCCCCEEEECCCCHHHHHHHHH IYSTYFSDIKFDGIFLDKIRYGSFSNKLNGVFNCFCKDCLNIYEKNNIDKESLMREMNNV HHHHHHHCCCCCCEEEECEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH SKGVIDNEDTPFGITEYINGKYKFKNKIWEDFFETKNQNIYKALLEISSYFKSKGLKIGI HCCCCCCCCCCCCHHHHHCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEH DTFSPFISYFTGQDLEKLQEVADFIKPMMYRTTKAPAGLPFEFERFIDESIHKNKEIGKR HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHCCCH NFLDILGIKEYEGDVYPIEFVLEEIDFMTRNLNKDIYVGVEINKKEIISPVTPKYISENI HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCCCCHHHHHHHH SNINKTTVKGYVLSWDLLSAPKENIDEIIKWFRN HCCCHHHHEEEEEEEHHHHCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA