| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is ywrD [H]
Identifier: 126699138
GI number: 126699138
Start: 1778465
End: 1780078
Strand: Direct
Name: ywrD [H]
Synonym: CD1534
Alternate gene names: 126699138
Gene position: 1778465-1780078 (Clockwise)
Preceding gene: 126699137
Following gene: 126699140
Centisome position: 41.45
GC content: 33.52
Gene sequence:
>1614_bases ATGAAGTTTAATGCCTACCAACATAAATACTCATCAATAAGAAATGTCGTGTATGCTAAAAATGGAGCAGTTGCAACATC AACACCACTAGCATCTCAAGCTGGACTTGAAATACTAAAAAAGGGTGGAAATGCTGTTGATGCAGCAGTTGCAACAGCCG CCACATTAGCAGTAGTAGAACCTACAAGCAATGGGATTGGAGGAGATGCATATGCCCTTGTTTGGATAGAGGAAGAAAAA CGATTGTATGGTTTAAATTCTAGTGGCTTTGCTCCAGAAAATATGGAATTAAAAAATTATAATAATATGAAAGAAATGCC AAAATATGGGTTTGGAGCAGTAACTGTACCTGGAATACCAGCAGCTTGGTCAGAATTAAATAAAAAATATGGTAAACTTA GCTTAATGGAATGCTTATCTCCAGCGATAAACTATGCAAGAGAGGGATACGTAGTATCTCCTAATGTAGCTAAGGTATGG AAAAAATCATATGAACTCTATGAAAAAGAACTTATTGGAGAAGAGTTCAAACCATGGTTTGATACATTTTCTAAAGATGG TAAAGCTCCAGAGGCTGGAGATATATTTATATGTGAAGAACAGGCAAGTACATTAGAAGAGATAGCAAATACTCAGGCTG AAAGCTTTTATAGAGGAAGACTTGCTGATAAAATAGATGAATATTCTAAAAAATTTAATGGGGCTATAAGAAAGAGTGAC TTAGAGTGTTTTTATCCAACATGGGTAGAACCTATAAGTACAGAATATAAGGGATATAAAATATTTGAAATCCCACCAAA TGGTCATGGAATAACAGTTTTAATGGCACTTAACATATTAAAAGAACTGGAATTAGAAGGAAATATAGAAAATGTAGAAG ACATACATAAAATTATAGAGAGTTTAAAATTAGCTTTTGCAGATTCTAAAACATATGTAACTGATATAGAGCATATGAAG GTAAAGATTCAGGAATTACTAAGCCAAGAGTATGCCAAAAAAAGAAGTTTATTGATTGACAATAAAGAGGCTTTGTATCC AACTGCAGGAGAGCCATATTGTGGTGGTACAGTATACCTTTGTACTGCAGATAAGGATGGAAATATGGTTTCATATATAC AGAGCAATTACATAAATTTTGGTTCAGGAATTGTGATACCAAGAACTGGGATTGCTTTACATAGTAGAGGAAATAATTTT AATTTAGACCCTAAACACCACAATGTAGTAAAACCATTTAAAAAACCTTATCATACTATAATACCTGGATTTTTAGGTAA AGAAGATAAAGCAATAGGTCCATTTGGTGTAATGGGAGCTTTTATGCAACCACAAGGACATATTCAAGTGTTAACAAATA TGATTGATTTTGGATTAAATCCACAAGAGGCGCTAGATGCTCCAAGATGGCAGTGGATAAAAGGAAAAGAAATAGAAGTT GAACCAGAGATGCCAAAGCATATAATAGATTCATTAATTGAAAAGGGTCATGAAATAAAAGTAATTCATGATACTGTTGA CATGGGACGAGGTCAAATAATATTTAAAACAGAACAGGAAAGTTATATTTGTGGGACGGAATCAAGATGTGATGGTCATA TTGCAGTTTATTAA
Upstream 100 bases:
>100_bases AGTCTATATTTTATATCATTTTGTATCAGTTACATTACTTGATGTTATATAATAAATCTAAGCAGAATATCAAATAAAAA ATGACGAGGAGCTGAAATTT
Downstream 100 bases:
>100_bases TATTATCAACTAAAATATATATAATAAATTTAAAGAGTATATGAAATAATAAGTAAAGGCGAAAGTCTACAATGACTGAC GCCTTTACAAAACTTAAGCT
Product: gamma-glutamyltranspeptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 537; Mature: 537
Protein sequence:
>537_residues MKFNAYQHKYSSIRNVVYAKNGAVATSTPLASQAGLEILKKGGNAVDAAVATAATLAVVEPTSNGIGGDAYALVWIEEEK RLYGLNSSGFAPENMELKNYNNMKEMPKYGFGAVTVPGIPAAWSELNKKYGKLSLMECLSPAINYAREGYVVSPNVAKVW KKSYELYEKELIGEEFKPWFDTFSKDGKAPEAGDIFICEEQASTLEEIANTQAESFYRGRLADKIDEYSKKFNGAIRKSD LECFYPTWVEPISTEYKGYKIFEIPPNGHGITVLMALNILKELELEGNIENVEDIHKIIESLKLAFADSKTYVTDIEHMK VKIQELLSQEYAKKRSLLIDNKEALYPTAGEPYCGGTVYLCTADKDGNMVSYIQSNYINFGSGIVIPRTGIALHSRGNNF NLDPKHHNVVKPFKKPYHTIIPGFLGKEDKAIGPFGVMGAFMQPQGHIQVLTNMIDFGLNPQEALDAPRWQWIKGKEIEV EPEMPKHIIDSLIEKGHEIKVIHDTVDMGRGQIIFKTEQESYICGTESRCDGHIAVY
Sequences:
>Translated_537_residues MKFNAYQHKYSSIRNVVYAKNGAVATSTPLASQAGLEILKKGGNAVDAAVATAATLAVVEPTSNGIGGDAYALVWIEEEK RLYGLNSSGFAPENMELKNYNNMKEMPKYGFGAVTVPGIPAAWSELNKKYGKLSLMECLSPAINYAREGYVVSPNVAKVW KKSYELYEKELIGEEFKPWFDTFSKDGKAPEAGDIFICEEQASTLEEIANTQAESFYRGRLADKIDEYSKKFNGAIRKSD LECFYPTWVEPISTEYKGYKIFEIPPNGHGITVLMALNILKELELEGNIENVEDIHKIIESLKLAFADSKTYVTDIEHMK VKIQELLSQEYAKKRSLLIDNKEALYPTAGEPYCGGTVYLCTADKDGNMVSYIQSNYINFGSGIVIPRTGIALHSRGNNF NLDPKHHNVVKPFKKPYHTIIPGFLGKEDKAIGPFGVMGAFMQPQGHIQVLTNMIDFGLNPQEALDAPRWQWIKGKEIEV EPEMPKHIIDSLIEKGHEIKVIHDTVDMGRGQIIFKTEQESYICGTESRCDGHIAVY >Mature_537_residues MKFNAYQHKYSSIRNVVYAKNGAVATSTPLASQAGLEILKKGGNAVDAAVATAATLAVVEPTSNGIGGDAYALVWIEEEK RLYGLNSSGFAPENMELKNYNNMKEMPKYGFGAVTVPGIPAAWSELNKKYGKLSLMECLSPAINYAREGYVVSPNVAKVW KKSYELYEKELIGEEFKPWFDTFSKDGKAPEAGDIFICEEQASTLEEIANTQAESFYRGRLADKIDEYSKKFNGAIRKSD LECFYPTWVEPISTEYKGYKIFEIPPNGHGITVLMALNILKELELEGNIENVEDIHKIIESLKLAFADSKTYVTDIEHMK VKIQELLSQEYAKKRSLLIDNKEALYPTAGEPYCGGTVYLCTADKDGNMVSYIQSNYINFGSGIVIPRTGIALHSRGNNF NLDPKHHNVVKPFKKPYHTIIPGFLGKEDKAIGPFGVMGAFMQPQGHIQVLTNMIDFGLNPQEALDAPRWQWIKGKEIEV EPEMPKHIIDSLIEKGHEIKVIHDTVDMGRGQIIFKTEQESYICGTESRCDGHIAVY
Specific function: GGT PLAYS A KEY ROLE IN THE GAMMA-GLUTAMYL CYCLE, A PATHWAY FOR THE SYNTHESIS AND DEGRADATION OF GLUTATHIONE. [C]
COG id: COG0405
COG function: function code E; Gamma-glutamyltransferase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gamma-glutamyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI73915092, Length=550, Percent_Identity=23.4545454545455, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI73915090, Length=550, Percent_Identity=23.4545454545455, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI73915096, Length=550, Percent_Identity=23.4545454545455, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI73915094, Length=550, Percent_Identity=23.4545454545455, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI113429324, Length=481, Percent_Identity=24.948024948025, Blast_Score=120, Evalue=4e-27, Organism=Homo sapiens, GI113429326, Length=481, Percent_Identity=24.948024948025, Blast_Score=119, Evalue=6e-27, Organism=Homo sapiens, GI109148539, Length=505, Percent_Identity=24.950495049505, Blast_Score=116, Evalue=7e-26, Organism=Homo sapiens, GI153266885, Length=392, Percent_Identity=25, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI153266901, Length=392, Percent_Identity=25, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI153266907, Length=390, Percent_Identity=24.1025641025641, Blast_Score=89, Evalue=8e-18, Organism=Escherichia coli, GI1789856, Length=516, Percent_Identity=31.0077519379845, Blast_Score=202, Evalue=4e-53, Organism=Caenorhabditis elegans, GI72000294, Length=432, Percent_Identity=26.6203703703704, Blast_Score=125, Evalue=5e-29, Organism=Caenorhabditis elegans, GI212646519, Length=432, Percent_Identity=26.6203703703704, Blast_Score=125, Evalue=7e-29, Organism=Caenorhabditis elegans, GI193208245, Length=514, Percent_Identity=24.9027237354086, Blast_Score=119, Evalue=3e-27, Organism=Caenorhabditis elegans, GI193208247, Length=514, Percent_Identity=24.9027237354086, Blast_Score=119, Evalue=4e-27, Organism=Caenorhabditis elegans, GI17506189, Length=528, Percent_Identity=25.7575757575758, Blast_Score=114, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17542894, Length=509, Percent_Identity=24.3614931237721, Blast_Score=109, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6323330, Length=532, Percent_Identity=24.0601503759398, Blast_Score=74, Evalue=4e-14, Organism=Drosophila melanogaster, GI161077878, Length=533, Percent_Identity=24.953095684803, Blast_Score=123, Evalue=4e-28, Organism=Drosophila melanogaster, GI24642670, Length=529, Percent_Identity=25.3308128544423, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI24642666, Length=529, Percent_Identity=25.3308128544423, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI45551474, Length=533, Percent_Identity=24.953095684803, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI161077880, Length=533, Percent_Identity=24.953095684803, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI161077496, Length=520, Percent_Identity=24.6153846153846, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI18859741, Length=533, Percent_Identity=22.3264540337711, Blast_Score=105, Evalue=8e-23, Organism=Drosophila melanogaster, GI18859893, Length=441, Percent_Identity=25.6235827664399, Blast_Score=97, Evalue=3e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000101 [H]
Pfam domain/function: PF01019 G_glu_transpept [H]
EC number: =2.3.2.2 [H]
Molecular weight: Translated: 59963; Mature: 59963
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFNAYQHKYSSIRNVVYAKNGAVATSTPLASQAGLEILKKGGNAVDAAVATAATLAVVE CCCCHHHHHHHHHHHEEEECCCCEECCCCCCHHHHHHHHHCCCCHHHHHHHHHEEEEEEC PTSNGIGGDAYALVWIEEEKRLYGLNSSGFAPENMELKNYNNMKEMPKYGFGAVTVPGIP CCCCCCCCCEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCC AAWSELNKKYGKLSLMECLSPAINYAREGYVVSPNVAKVWKKSYELYEKELIGEEFKPWF HHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHCHHCCHHH DTFSKDGKAPEAGDIFICEEQASTLEEIANTQAESFYRGRLADKIDEYSKKFNGAIRKSD HHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC LECFYPTWVEPISTEYKGYKIFEIPPNGHGITVLMALNILKELELEGNIENVEDIHKIIE CCEECCCCCCCCCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHH SLKLAFADSKTYVTDIEHMKVKIQELLSQEYAKKRSLLIDNKEALYPTAGEPYCGGTVYL HHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCEEEE CTADKDGNMVSYIQSNYINFGSGIVIPRTGIALHSRGNNFNLDPKHHNVVKPFKKPYHTI EEECCCCCEEHHHHHCCEECCCCEEEECCCEEEEECCCCCCCCCCCCCCCCHHHCCHHHH IPGFLGKEDKAIGPFGVMGAFMQPQGHIQVLTNMIDFGLNPQEALDAPRWQWIKGKEIEV CCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHCCCCEEEECCCEEEE EPEMPKHIIDSLIEKGHEIKVIHDTVDMGRGQIIFKTEQESYICGTESRCDGHIAVY CCCCHHHHHHHHHHCCCEEEEEEEHHCCCCCEEEEEECCCCEEECCCCCCCCCEEEC >Mature Secondary Structure MKFNAYQHKYSSIRNVVYAKNGAVATSTPLASQAGLEILKKGGNAVDAAVATAATLAVVE CCCCHHHHHHHHHHHEEEECCCCEECCCCCCHHHHHHHHHCCCCHHHHHHHHHEEEEEEC PTSNGIGGDAYALVWIEEEKRLYGLNSSGFAPENMELKNYNNMKEMPKYGFGAVTVPGIP CCCCCCCCCEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCC AAWSELNKKYGKLSLMECLSPAINYAREGYVVSPNVAKVWKKSYELYEKELIGEEFKPWF HHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHCHHCCHHH DTFSKDGKAPEAGDIFICEEQASTLEEIANTQAESFYRGRLADKIDEYSKKFNGAIRKSD HHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC LECFYPTWVEPISTEYKGYKIFEIPPNGHGITVLMALNILKELELEGNIENVEDIHKIIE CCEECCCCCCCCCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHH SLKLAFADSKTYVTDIEHMKVKIQELLSQEYAKKRSLLIDNKEALYPTAGEPYCGGTVYL HHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCEEEE CTADKDGNMVSYIQSNYINFGSGIVIPRTGIALHSRGNNFNLDPKHHNVVKPFKKPYHTI EEECCCCCEEHHHHHCCEECCCCEEEECCCEEEEECCCCCCCCCCCCCCCCHHHCCHHHH IPGFLGKEDKAIGPFGVMGAFMQPQGHIQVLTNMIDFGLNPQEALDAPRWQWIKGKEIEV CCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHCCCCEEEECCCEEEE EPEMPKHIIDSLIEKGHEIKVIHDTVDMGRGQIIFKTEQESYICGTESRCDGHIAVY CCCCHHHHHHHHHHCCCEEEEEEEHHCCCCCEEEEEECCCCEEECCCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]