| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is ssuC [H]
Identifier: 126699086
GI number: 126699086
Start: 1718131
End: 1718901
Strand: Direct
Name: ssuC [H]
Synonym: CD1482
Alternate gene names: 126699086
Gene position: 1718131-1718901 (Clockwise)
Preceding gene: 126699085
Following gene: 126699087
Centisome position: 40.05
GC content: 27.5
Gene sequence:
>771_bases ATGTTTGAGAAAATTCATAAAAGGCTTAAAGGATATTATATTTTTTTAATAATTTTAATTTTATGGAAGATAGTATGTGT TTTGGGTATATGGAGTAGCTATATTCTGCCTCCTCCTGAAATAGTCTTAGATACTTTTATAAAAATGATATATGACGGTT CTATTTTCTTAAATGTTTATGCCAGTGTAAGAAGGATATTAATAGGTTTTTTAATAAGTTCATTGATGGCTATACCACTT GGAGTTTTATTTGGAGTAAATAAAAAAATGTATGAATATTTCAAACCACTATTTGAATTTATGCGAAGTACACCTCCACT AGCTTTGGTGCCAATGCTTATTTTATGGTTTGGTATAGGTGAAGAATCTAAAATTATAATTATTATTTTGGCATCCTTTT TTCCAATATTTTTAAATACATTGAAAGGTATAAAAAATTGTGACAATAAATTAATAGAAGTAGGTAAATCTTTTAATTTA TCTAAAAAGAGAATTTTTTATAAAATAATAATCCCTAATTCTATGCTGGATATTGTTGTTGGACTTAGTTTAGGGCTTGG GTATAGTTTTAGGGCTATAATTGGAGCAGAGCTTATTGCAGCTTCTTCAGGACTAGGATATTTGATTTCTGATGGAAAAG ATATGTCTAGAACTGATGTTGTATTGGTAGGAATTTTTGTTATTGGATTTTTAGGTATACTTTCAGATTATCTATTTTCA AAGATAATAACAAAATTTAGCAAAGGGAAGCAGGTTGATTTAAATGGTTAG
Upstream 100 bases:
>100_bases ACTTGGCATAGATTAAATCTTATGATATAGCTTAATTATTATTTAAGATATTAAAAAATAAAAAGGGTAGCAGGGATAGA TATGTTAAAAGGAGTTTTAT
Downstream 100 bases:
>100_bases AAGTGGATTTTTGCTAGAGAATATATATAAGAAATATTTAGTTGATAATAAAGAGCATTTAGTTCTTGATAATATATCTT TAAATATATCTAGTGAAGAG
Product: aliphatic sulfonate ABC transporter permease
Products: taurine [Cytoplasm]; ADP; phosphate [C]
Alternate protein names: NA
Number of amino acids: Translated: 256; Mature: 256
Protein sequence:
>256_residues MFEKIHKRLKGYYIFLIILILWKIVCVLGIWSSYILPPPEIVLDTFIKMIYDGSIFLNVYASVRRILIGFLISSLMAIPL GVLFGVNKKMYEYFKPLFEFMRSTPPLALVPMLILWFGIGEESKIIIIILASFFPIFLNTLKGIKNCDNKLIEVGKSFNL SKKRIFYKIIIPNSMLDIVVGLSLGLGYSFRAIIGAELIAASSGLGYLISDGKDMSRTDVVLVGIFVIGFLGILSDYLFS KIITKFSKGKQVDLNG
Sequences:
>Translated_256_residues MFEKIHKRLKGYYIFLIILILWKIVCVLGIWSSYILPPPEIVLDTFIKMIYDGSIFLNVYASVRRILIGFLISSLMAIPL GVLFGVNKKMYEYFKPLFEFMRSTPPLALVPMLILWFGIGEESKIIIIILASFFPIFLNTLKGIKNCDNKLIEVGKSFNL SKKRIFYKIIIPNSMLDIVVGLSLGLGYSFRAIIGAELIAASSGLGYLISDGKDMSRTDVVLVGIFVIGFLGILSDYLFS KIITKFSKGKQVDLNG >Mature_256_residues MFEKIHKRLKGYYIFLIILILWKIVCVLGIWSSYILPPPEIVLDTFIKMIYDGSIFLNVYASVRRILIGFLISSLMAIPL GVLFGVNKKMYEYFKPLFEFMRSTPPLALVPMLILWFGIGEESKIIIIILASFFPIFLNTLKGIKNCDNKLIEVGKSFNL SKKRIFYKIIIPNSMLDIVVGLSLGLGYSFRAIIGAELIAASSGLGYLISDGKDMSRTDVVLVGIFVIGFLGILSDYLFS KIITKFSKGKQVDLNG
Specific function: Part of a binding-protein-dependent transport system for aliphatic sulfonates. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0600
COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1786564, Length=237, Percent_Identity=32.4894514767932, Blast_Score=152, Evalue=2e-38, Organism=Escherichia coli, GI87081802, Length=229, Percent_Identity=35.3711790393013, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI1789033, Length=180, Percent_Identity=28.8888888888889, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1788449, Length=183, Percent_Identity=26.775956284153, Blast_Score=62, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 28805; Mature: 28805
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFEKIHKRLKGYYIFLIILILWKIVCVLGIWSSYILPPPEIVLDTFIKMIYDGSIFLNVY CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHH ASVRRILIGFLISSLMAIPLGVLFGVNKKMYEYFKPLFEFMRSTPPLALVPMLILWFGIG HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC EESKIIIIILASFFPIFLNTLKGIKNCDNKLIEVGKSFNLSKKRIFYKIIIPNSMLDIVV CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEECCCHHHHHHH GLSLGLGYSFRAIIGAELIAASSGLGYLISDGKDMSRTDVVLVGIFVIGFLGILSDYLFS HHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH KIITKFSKGKQVDLNG HHHHHHCCCCEECCCC >Mature Secondary Structure MFEKIHKRLKGYYIFLIILILWKIVCVLGIWSSYILPPPEIVLDTFIKMIYDGSIFLNVY CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHH ASVRRILIGFLISSLMAIPLGVLFGVNKKMYEYFKPLFEFMRSTPPLALVPMLILWFGIG HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC EESKIIIIILASFFPIFLNTLKGIKNCDNKLIEVGKSFNLSKKRIFYKIIIPNSMLDIVV CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEECCCHHHHHHH GLSLGLGYSFRAIIGAELIAASSGLGYLISDGKDMSRTDVVLVGIFVIGFLGILSDYLFS HHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH KIITKFSKGKQVDLNG HHHHHHCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: taurine [Periplasm]; ATP; H2O [C]
Specific reaction: taurine [Periplasm] + ATP + H2O = taurine [Cytoplasm] + ADP + phosphate [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8011666; 9782504; 9384377 [H]