| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is xkdM [H]
Identifier: 126698964
GI number: 126698964
Start: 1578187
End: 1578615
Strand: Direct
Name: xkdM [H]
Synonym: CD1364
Alternate gene names: 126698964
Gene position: 1578187-1578615 (Clockwise)
Preceding gene: 126698963
Following gene: 126698965
Centisome position: 36.79
GC content: 33.57
Gene sequence:
>429_bases ATGGCAAATATGGAAGCTAGAAATGTAATGAGTGGTACTTGGGGAGAACTTTGGCTTGATGGAAACAAAGTAGCAGAAGT AAAGAAGTTTCAAGCAAAGATGGAATTTACAAAAGAAGATATTATAATAGCAGGTCAAATGGGTACTGATACAAAGTATA TGGGATATAAAGGAAAAGGCTCAATAACTCTATACCATGTTAGTTCAAGAATGCACAAGTTAATTGGAGAAAAGATAAAG AGAGGTTCTGAACCTAGATTTGTTGCTATATCTAAATTAAATGACCCAGATTCTTATGGAGCAGAAAGAATAGCAGTAAA GAATATAGCATTTGATGATTTAACTTTAGCTGATTGGGAGGTTGGCGTAAAAGGAGAGATAGAAGCACCTTTCACATTTA CTGAGTATGATTTTCTTGATATAATTTAG
Upstream 100 bases:
>100_bases GCTAACACAGGTTCTAAAGTATTTTTAAAAGCAAAAATAAAAGTACTTGATGCTATGGAAGATATAGATTTATCAATAGA AATATAGGAGGATTATTAAT
Downstream 100 bases:
>100_bases TTTTATATTTAGTTTTATATTTGGTTTTATACTGATATTTAGTAAATATATACTTAATAAATTCAGATAGTTAATAAGTA AAAAAGTTAGTTGATTGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 142; Mature: 141
Protein sequence:
>142_residues MANMEARNVMSGTWGELWLDGNKVAEVKKFQAKMEFTKEDIIIAGQMGTDTKYMGYKGKGSITLYHVSSRMHKLIGEKIK RGSEPRFVAISKLNDPDSYGAERIAVKNIAFDDLTLADWEVGVKGEIEAPFTFTEYDFLDII
Sequences:
>Translated_142_residues MANMEARNVMSGTWGELWLDGNKVAEVKKFQAKMEFTKEDIIIAGQMGTDTKYMGYKGKGSITLYHVSSRMHKLIGEKIK RGSEPRFVAISKLNDPDSYGAERIAVKNIAFDDLTLADWEVGVKGEIEAPFTFTEYDFLDII >Mature_141_residues ANMEARNVMSGTWGELWLDGNKVAEVKKFQAKMEFTKEDIIIAGQMGTDTKYMGYKGKGSITLYHVSSRMHKLIGEKIKR GSEPRFVAISKLNDPDSYGAERIAVKNIAFDDLTLADWEVGVKGEIEAPFTFTEYDFLDII
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yqbM [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018989 [H]
Pfam domain/function: PF09393 DUF2001 [H]
EC number: NA
Molecular weight: Translated: 16008; Mature: 15876
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANMEARNVMSGTWGELWLDGNKVAEVKKFQAKMEFTKEDIIIAGQMGTDTKYMGYKGKG CCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCEEECCCCCC SITLYHVSSRMHKLIGEKIKRGSEPRFVAISKLNDPDSYGAERIAVKNIAFDDLTLADWE CEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEECEE VGVKGEIEAPFTFTEYDFLDII CCCCCCCCCCEEECCCCEEECC >Mature Secondary Structure ANMEARNVMSGTWGELWLDGNKVAEVKKFQAKMEFTKEDIIIAGQMGTDTKYMGYKGKG CCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCEEECCCCCC SITLYHVSSRMHKLIGEKIKRGSEPRFVAISKLNDPDSYGAERIAVKNIAFDDLTLADWE CEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEECEE VGVKGEIEAPFTFTEYDFLDII CCCCCCCCCCEEECCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]