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The map label for this gene is cspB [H]

Identifier: 126698954

GI number: 126698954

Start: 1571945

End: 1572145

Strand: Direct

Name: cspB [H]

Synonym: CD1355

Alternate gene names: 126698954

Gene position: 1571945-1572145 (Clockwise)

Preceding gene: 126698953

Following gene: 126698955

Centisome position: 36.64

GC content: 36.32

Gene sequence:

>201_bases
ATGAAAACTGGTGTAGTTAAATGGTTTAACAACGAAAAAGGATTTGGATTCATATCTGTAGAAGGTGAAGGAGATGTTTT
CGTACATTTCTCAGCTATAACTGGAGATGGATACAAAACATTAGAAGAAGGACAAAGCGTTGAGTTCGAAGTAGTAGATG
GAGCTAAAGGTCCTCAAGCTGCTAACGTAGTTAGATTATAA

Upstream 100 bases:

>100_bases
AATAATAATAATTGACAAACATAGCTATATATGATAGAGTAGTAATAAGGTTACAGAAAAGAGTAGCTAAATATTTGTGT
TTTTTTAGGAGGATTTATTA

Downstream 100 bases:

>100_bases
TTAAAAATTCATATATATTAGTGTTCTAGTAATATGAGAGATAAGCCGCTAATCATTTAGCGGTTTTTTCAGTTTTTGTA
AATAAAATTAATAGCAAAAT

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MKTGVVKWFNNEKGFGFISVEGEGDVFVHFSAITGDGYKTLEEGQSVEFEVVDGAKGPQAANVVRL

Sequences:

>Translated_66_residues
MKTGVVKWFNNEKGFGFISVEGEGDVFVHFSAITGDGYKTLEEGQSVEFEVVDGAKGPQAANVVRL
>Mature_66_residues
MKTGVVKWFNNEKGFGFISVEGEGDVFVHFSAITGDGYKTLEEGQSVEFEVVDGAKGPQAANVVRL

Specific function: Involved in cold stress response [H]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=68.75, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=68.2539682539683, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=64.6153846153846, Blast_Score=86, Evalue=3e-19,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=65.625, Blast_Score=85, Evalue=9e-19,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=58.4615384615385, Blast_Score=79, Evalue=5e-17,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=61.5384615384615, Blast_Score=79, Evalue=7e-17,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=56.7164179104478, Blast_Score=77, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7124; Mature: 7124

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTGVVKWFNNEKGFGFISVEGEGDVFVHFSAITGDGYKTLEEGQSVEFEVVDGAKGPQA
CCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCC
ANVVRL
CEEEEC
>Mature Secondary Structure
MKTGVVKWFNNEKGFGFISVEGEGDVFVHFSAITGDGYKTLEEGQSVEFEVVDGAKGPQA
CCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCC
ANVVRL
CEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA