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The map label for this gene is rbfA

Identifier: 126698909

GI number: 126698909

Start: 1520506

End: 1520886

Strand: Direct

Name: rbfA

Synonym: CD1310

Alternate gene names: 126698909

Gene position: 1520506-1520886 (Clockwise)

Preceding gene: 126698908

Following gene: 126698910

Centisome position: 35.44

GC content: 29.92

Gene sequence:

>381_bases
ATGGCATCATATAATAGAACAAGAAGGATAGCAGAAGAAATAAGAAAAGTCGTAAGTACTATGCTTATAAATGGAGTAAA
AGACCCTAGAATAACATCTATGGTGAGTGTAACTGATGTAGAAGTTACAAATGACCTAAGATATGCTTATGTATATGTAA
GTATTCTAGGCGGAGATGAAGAATCCACACTAACAGGTCTTAAAAGTGCTGGAGGATATATAAGAAGAGAAGTAGGAAAA
AATATAAAACTTAGATATATTCCTGAGATAGTATTTAAACTTGATGATTCAATAGAAAAAGGAATGTATATGGATAGCCT
TATAAAAAGAGTTAATGAAAAAAATGCTCAACAAAATGAGGATGAAAATTATGATGAATAA

Upstream 100 bases:

>100_bases
AAAAGAAGGCGATATAGTAGAAGCTTATATAACTAAAGAAGTAGAAAGAAAATTATAAATTCGTATCAAAGAAAATCAGT
TAGTAAAGAAGGTCGATGGT

Downstream 100 bases:

>100_bases
TATGGATAGTATTATAAACTATATTTATGAGGGTGACTATTTTATAGTTACCTCTCATATCAGTCCAGATGGAGACAATA
TTGGTTCTACACTTTCAATG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MASYNRTRRIAEEIRKVVSTMLINGVKDPRITSMVSVTDVEVTNDLRYAYVYVSILGGDEESTLTGLKSAGGYIRREVGK
NIKLRYIPEIVFKLDDSIEKGMYMDSLIKRVNEKNAQQNEDENYDE

Sequences:

>Translated_126_residues
MASYNRTRRIAEEIRKVVSTMLINGVKDPRITSMVSVTDVEVTNDLRYAYVYVSILGGDEESTLTGLKSAGGYIRREVGK
NIKLRYIPEIVFKLDDSIEKGMYMDSLIKRVNEKNAQQNEDENYDE
>Mature_125_residues
ASYNRTRRIAEEIRKVVSTMLINGVKDPRITSMVSVTDVEVTNDLRYAYVYVSILGGDEESTLTGLKSAGGYIRREVGKN
IKLRYIPEIVFKLDDSIEKGMYMDSLIKRVNEKNAQQNEDENYDE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=112, Percent_Identity=39.2857142857143, Blast_Score=88, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_CLOD6 (Q18BH6)

Other databases:

- EMBL:   AM180355
- RefSeq:   YP_001087806.1
- ProteinModelPortal:   Q18BH6
- SMR:   Q18BH6
- STRING:   Q18BH6
- GeneID:   4914469
- GenomeReviews:   AM180355_GR
- KEGG:   cdf:CD1310
- NMPDR:   fig|1496.1.peg.3422
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   CLSK2534804
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14434; Mature: 14302

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASYNRTRRIAEEIRKVVSTMLINGVKDPRITSMVSVTDVEVTNDLRYAYVYVSILGGDE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEHHCEECCCCCEEEEEEEEEECCCC
ESTLTGLKSAGGYIRREVGKNIKLRYIPEIVFKLDDSIEKGMYMDSLIKRVNEKNAQQNE
HHHHHHHHHCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCC
DENYDE
CCCCCC
>Mature Secondary Structure 
ASYNRTRRIAEEIRKVVSTMLINGVKDPRITSMVSVTDVEVTNDLRYAYVYVSILGGDE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEHHCEECCCCCEEEEEEEEEECCCC
ESTLTGLKSAGGYIRREVGKNIKLRYIPEIVFKLDDSIEKGMYMDSLIKRVNEKNAQQNE
HHHHHHHHHCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCC
DENYDE
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA