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The map label for this gene is rimP

Identifier: 126698904

GI number: 126698904

Start: 1516267

End: 1516728

Strand: Direct

Name: rimP

Synonym: CD1306

Alternate gene names: 126698904

Gene position: 1516267-1516728 (Clockwise)

Preceding gene: 126698903

Following gene: 126698905

Centisome position: 35.34

GC content: 27.71

Gene sequence:

>462_bases
ATGAAAAAAAATTTAGAAGCTACAATTGAGGAGATTGTAACTAAAATAACGGATGAACATGGATTTGAAATGGTTGATGT
TGAATATGTAAAAGAAGCAGGAGAATACTACTTAAGAGTATACATAGATAAAGAAGAAGGAATATCTTTAAATGAATGTG
AATTAGTTAGTAGAGAATTAAGTCCAATACTAGATGAAAAAGACCCTATAAAAGAAAATTACTTTTTAGAGGTATCTTCT
CCAGGGCTTGATAGAGCATTAAAAAAAGACAGAGATTTTGTTAGATATCAAGGTAGAGATGTAGATTTAAAATTATATAA
ACCATTAAATGGATGTAAGCAATTTGAAGGTGAACTTGTAGGATTAACAGAAGATAATAATATAAAAATCATTGCAAATG
GTAAGGAAATGGAATTTAATAGAAAAGATGTTGCTATTGTCAGATTAGCAATAAAGTTTTAG

Upstream 100 bases:

>100_bases
ATTTTAAATATATTATTAAAAAGCTGGTTTATTTTTATTAAATATATTTTATTTAAGATTATATAAACTGGTCATTTACA
ATTGAATAGGAGGAACTTTA

Downstream 100 bases:

>100_bases
TGGTATATTAAATAGGGAGGATATAAAAAATGAATCATGAATTTATGGAAGCATTAGATGAATTAGTAGTTGACAGAGGT
ATAGATAAAGAAATACTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MKKNLEATIEEIVTKITDEHGFEMVDVEYVKEAGEYYLRVYIDKEEGISLNECELVSRELSPILDEKDPIKENYFLEVSS
PGLDRALKKDRDFVRYQGRDVDLKLYKPLNGCKQFEGELVGLTEDNNIKIIANGKEMEFNRKDVAIVRLAIKF

Sequences:

>Translated_153_residues
MKKNLEATIEEIVTKITDEHGFEMVDVEYVKEAGEYYLRVYIDKEEGISLNECELVSRELSPILDEKDPIKENYFLEVSS
PGLDRALKKDRDFVRYQGRDVDLKLYKPLNGCKQFEGELVGLTEDNNIKIIANGKEMEFNRKDVAIVRLAIKF
>Mature_153_residues
MKKNLEATIEEIVTKITDEHGFEMVDVEYVKEAGEYYLRVYIDKEEGISLNECELVSRELSPILDEKDPIKENYFLEVSS
PGLDRALKKDRDFVRYQGRDVDLKLYKPLNGCKQFEGELVGLTEDNNIKIIANGKEMEFNRKDVAIVRLAIKF

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=151, Percent_Identity=33.112582781457, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_CLOD6 (Q18BH3)

Other databases:

- EMBL:   AM180355
- RefSeq:   YP_001087801.1
- ProteinModelPortal:   Q18BH3
- SMR:   Q18BH3
- STRING:   Q18BH3
- GeneID:   4914022
- GenomeReviews:   AM180355_GR
- KEGG:   cdf:CD1306
- NMPDR:   fig|1496.1.peg.3427
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   PYEKIAN
- ProtClustDB:   CLSK2534799
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 17756; Mature: 17756

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNLEATIEEIVTKITDEHGFEMVDVEYVKEAGEYYLRVYIDKEEGISLNECELVSREL
CCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHH
SPILDEKDPIKENYFLEVSSPGLDRALKKDRDFVRYQGRDVDLKLYKPLNGCKQFEGELV
HHHCCCCCCCCCCEEEEECCCCHHHHHHCCCHHEEECCCCCEEEEECCCCHHHHCCCEEE
GLTEDNNIKIIANGKEMEFNRKDVAIVRLAIKF
EEECCCCEEEEECCCCCCCCCCCEEEEEEEEEC
>Mature Secondary Structure
MKKNLEATIEEIVTKITDEHGFEMVDVEYVKEAGEYYLRVYIDKEEGISLNECELVSREL
CCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHH
SPILDEKDPIKENYFLEVSSPGLDRALKKDRDFVRYQGRDVDLKLYKPLNGCKQFEGELV
HHHCCCCCCCCCCEEEEECCCCHHHHHHCCCHHEEECCCCCEEEEECCCCHHHHCCCEEE
GLTEDNNIKIIANGKEMEFNRKDVAIVRLAIKF
EEECCCCEEEEECCCCCCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA