| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is acd [H]
Identifier: 126698902
GI number: 126698902
Start: 1509727
End: 1511550
Strand: Direct
Name: acd [H]
Synonym: CD1304
Alternate gene names: 126698902
Gene position: 1509727-1511550 (Clockwise)
Preceding gene: 126698899
Following gene: 126698903
Centisome position: 35.19
GC content: 31.85
Gene sequence:
>1824_bases GTGAAGAAAAAAGCAGCTTTAGCAACATTGGCTATGTTACCCTTAGGTGTGGTAAATGCACATGCTGATGGAGATATAGG TATAGTGACTATAAATTATTTAAATGTAAGAAATGAACCAACTGCCGAAAGTAGCATAGCCTTTGTTGCTAAAAAAGATG ATAAAGTTTTGATTAAAGACTCTTCTAATGGATGGTATAAAATAAAAGCTGAATCTGGACAAGAAGGTTGGGCTTCATCA AAATATATAGCAAAATCAAATAGTGACTCTTTAAGAACGTCTACAAATAAAGAAAAACAAGTTATTTCAAATAGTTTAAA TATGAGAAATGGAGCAGGTACTAGTTACAGAGTAATAACTGTACTAAAAAAAGGTCAAAAAGTAGAAGTAATATCAGAGA GTAATGGATGGTCTAAAATCAAATATGATGGAAGACTAGGATATGTATCTAGCTCTTATTTAGGAGACGTTTCAAACTCA ACTAATAAATCAAAAACTAAACAAGTGAATACAACTTCACTAAATGTAAGGAGTGGACCAAATACAAGTTATGGTTTGTT AGGCAAGTTGCCAAAAGGAAGTAAAGTAGAAGTAATATCAGAAAGTAATGGATGGTCCAAAATAAAGTATAATGGAAAAG ATGCCTATGTATCTAGTATGTACTTATCGGATGTAAGTCAAAGTAATTCAGACAATTCTAGTCAAAGCAATGATAAAAAG AATACTGATAAGGTCGTAAATACAGCTTCTTTAAATGTAAGAAGTGGACCAGGTTCTACATATAGTAAGTTGGGAAAAGT TTATAAAGGAAGTAAAGTAACTGTACTATCAGAAAGTAGTGGATGGGCTAAGATTAATTTTAACAATAAAGAAGCATTTG TAGTAGGCAATTATTTATCTACTTCAGCAGATACTTCAAATAATAACTCAAATAGTAACTATGATAACAGTTCTAATAGT AATGGCAATAATTCTTCATCATCAGGTCAAGTAAATGGTATGTCAGGTATAAGTGGGGCTAAAATTGATTATAAATCTTT GAGTTATACTTTAGAATCTCATATAAGTAAACAAGTTGAGAAAGCAGCATCAGGAGGAAATGTGATAGCTCCAAGTAATA GGAAAAGCACTCCAAGTCCTGAATTTAGTACTTTTTCAGCTCAAAGAACAAGCTCATTTGTAAATGCAAGTTCAAGTGAT ATAGAATATTATTTAAATCCTAAGAATTTTACAAATACTACTAAAGGTATGATGCAGTTTTTAAAGATTAACAGTTATAG AGATGGTATTTCAGAATCAAGTCTTAACTCGTATCTTAATGGTTTATCTTCTAGTGTATTTAAAAACCAGGGAGCAGCCT TTATAAATGCTGCCAAGAAGTATAATATAGATGTTGTATATCTAGTATCTCATGCTATGTGGGAAACTGCTTATGGTAAG TCTACACTTGCCCAAGGTCAAACATTAACATCTTATAAGGGACAACCTCTTAGTAAGCCAGTTAAAGTATACAATTTTTT TGGTATAGGAGCAATAGATAAAAGTGCTAATGTTTCAGGTGCAGAAGCAGCGTATTCCAATGGCTGGACTAGTGTAGAAA CTACAATAGATGGCTCTGCAAAGTGGATATCACAAAATTACGTAAATAGTTCTAAGTACAATCAGAATACTATCTACAAG ATGAAGTGGAATTATGATTATACATGGCATCAGTATGCAACTGATGTAAACTGGGCTAATGGAATTTCTGGAATTATGGA AAATTTAATTGGTCTTTATAGAGGAGGAAGTAGTTTGGTTTTTGAAGTTCCTCAATATAAGTAA
Upstream 100 bases:
>100_bases ATGTATACAGAGTATAAATAGACAATATTTACTAAAATAACAAGTTGTCGTATAATTATATTAAAATTGTTTTAGTGTAT AAGAAGGGCGGGGGAAGTAC
Downstream 100 bases:
>100_bases TACATAAATAAAAAATATAGACTATGGGTAGTTTTCATTTTATTTAAATTATCTATAGTCTTTTTGTATATAATTTATAA TCTGTAAATTTAATGTTAAC
Product: mannosyl-glycoprotein endo-beta-N-acetylglucosamidase
Products: NA
Alternate protein names: Cell wall-associated polypeptide 90; CWBP90 [H]
Number of amino acids: Translated: 607; Mature: 607
Protein sequence:
>607_residues MKKKAALATLAMLPLGVVNAHADGDIGIVTINYLNVRNEPTAESSIAFVAKKDDKVLIKDSSNGWYKIKAESGQEGWASS KYIAKSNSDSLRTSTNKEKQVISNSLNMRNGAGTSYRVITVLKKGQKVEVISESNGWSKIKYDGRLGYVSSSYLGDVSNS TNKSKTKQVNTTSLNVRSGPNTSYGLLGKLPKGSKVEVISESNGWSKIKYNGKDAYVSSMYLSDVSQSNSDNSSQSNDKK NTDKVVNTASLNVRSGPGSTYSKLGKVYKGSKVTVLSESSGWAKINFNNKEAFVVGNYLSTSADTSNNNSNSNYDNSSNS NGNNSSSSGQVNGMSGISGAKIDYKSLSYTLESHISKQVEKAASGGNVIAPSNRKSTPSPEFSTFSAQRTSSFVNASSSD IEYYLNPKNFTNTTKGMMQFLKINSYRDGISESSLNSYLNGLSSSVFKNQGAAFINAAKKYNIDVVYLVSHAMWETAYGK STLAQGQTLTSYKGQPLSKPVKVYNFFGIGAIDKSANVSGAEAAYSNGWTSVETTIDGSAKWISQNYVNSSKYNQNTIYK MKWNYDYTWHQYATDVNWANGISGIMENLIGLYRGGSSLVFEVPQYK
Sequences:
>Translated_607_residues MKKKAALATLAMLPLGVVNAHADGDIGIVTINYLNVRNEPTAESSIAFVAKKDDKVLIKDSSNGWYKIKAESGQEGWASS KYIAKSNSDSLRTSTNKEKQVISNSLNMRNGAGTSYRVITVLKKGQKVEVISESNGWSKIKYDGRLGYVSSSYLGDVSNS TNKSKTKQVNTTSLNVRSGPNTSYGLLGKLPKGSKVEVISESNGWSKIKYNGKDAYVSSMYLSDVSQSNSDNSSQSNDKK NTDKVVNTASLNVRSGPGSTYSKLGKVYKGSKVTVLSESSGWAKINFNNKEAFVVGNYLSTSADTSNNNSNSNYDNSSNS NGNNSSSSGQVNGMSGISGAKIDYKSLSYTLESHISKQVEKAASGGNVIAPSNRKSTPSPEFSTFSAQRTSSFVNASSSD IEYYLNPKNFTNTTKGMMQFLKINSYRDGISESSLNSYLNGLSSSVFKNQGAAFINAAKKYNIDVVYLVSHAMWETAYGK STLAQGQTLTSYKGQPLSKPVKVYNFFGIGAIDKSANVSGAEAAYSNGWTSVETTIDGSAKWISQNYVNSSKYNQNTIYK MKWNYDYTWHQYATDVNWANGISGIMENLIGLYRGGSSLVFEVPQYK >Mature_607_residues MKKKAALATLAMLPLGVVNAHADGDIGIVTINYLNVRNEPTAESSIAFVAKKDDKVLIKDSSNGWYKIKAESGQEGWASS KYIAKSNSDSLRTSTNKEKQVISNSLNMRNGAGTSYRVITVLKKGQKVEVISESNGWSKIKYDGRLGYVSSSYLGDVSNS TNKSKTKQVNTTSLNVRSGPNTSYGLLGKLPKGSKVEVISESNGWSKIKYNGKDAYVSSMYLSDVSQSNSDNSSQSNDKK NTDKVVNTASLNVRSGPGSTYSKLGKVYKGSKVTVLSESSGWAKINFNNKEAFVVGNYLSTSADTSNNNSNSNYDNSSNS NGNNSSSSGQVNGMSGISGAKIDYKSLSYTLESHISKQVEKAASGGNVIAPSNRKSTPSPEFSTFSAQRTSSFVNASSSD IEYYLNPKNFTNTTKGMMQFLKINSYRDGISESSLNSYLNGLSSSVFKNQGAAFINAAKKYNIDVVYLVSHAMWETAYGK STLAQGQTLTSYKGQPLSKPVKVYNFFGIGAIDKSANVSGAEAAYSNGWTSVETTIDGSAKWISQNYVNSSKYNQNTIYK MKWNYDYTWHQYATDVNWANGISGIMENLIGLYRGGSSLVFEVPQYK
Specific function: Cell wall hydrolase not involved in cell autolysis, competence, sporulation or germination. It hydrolyzes the beta-1,4 glycan bond between the N-acetylglucosaminyl and the N- acetylmuramoyl residues in the glycan chain [H]
COG id: COG4193
COG function: function code G; Beta- N-acetylglucosaminidase
Gene ontology:
Cell location: Secreted. Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 73 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013338 - InterPro: IPR002901 - InterPro: IPR003646 - InterPro: IPR013247 - InterPro: IPR007730 [H]
Pfam domain/function: PF01832 Glucosaminidase; PF08239 SH3_3; PF05036 SPOR [H]
EC number: =3.2.1.96 [H]
Molecular weight: Translated: 65825; Mature: 65825
Theoretical pI: Translated: 9.99; Mature: 9.99
Prosite motif: PS50002 SH3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKAALATLAMLPLGVVNAHADGDIGIVTINYLNVRNEPTAESSIAFVAKKDDKVLIKD CCCHHHHHHHHHHHHHEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCEEEEEE SSNGWYKIKAESGQEGWASSKYIAKSNSDSLRTSTNKEKQVISNSLNMRNGAGTSYRVIT CCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEE VLKKGQKVEVISESNGWSKIKYDGRLGYVSSSYLGDVSNSTNKSKTKQVNTTSLNVRSGP EECCCCEEEEEECCCCCEEEEECCEEEEEEHHHCCCCCCCCCCCCCEEEEEEEEEECCCC NTSYGLLGKLPKGSKVEVISESNGWSKIKYNGKDAYVSSMYLSDVSQSNSDNSSQSNDKK CCCCCCEECCCCCCEEEEEECCCCCEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCCCCC NTDKVVNTASLNVRSGPGSTYSKLGKVYKGSKVTVLSESSGWAKINFNNKEAFVVGNYLS CHHHHEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCEEEEEECEEC TSADTSNNNSNSNYDNSSNSNGNNSSSSGQVNGMSGISGAKIDYKSLSYTLESHISKQVE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHH KAASGGNVIAPSNRKSTPSPEFSTFSAQRTSSFVNASSSDIEYYLNPKNFTNTTKGMMQF HHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH LKINSYRDGISESSLNSYLNGLSSSVFKNQGAAFINAAKKYNIDVVYLVSHAMWETAYGK HHHCCHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCCCEEEEEEHHHHHHHHCCC STLAQGQTLTSYKGQPLSKPVKVYNFFGIGAIDKSANVSGAEAAYSNGWTSVETTIDGSA HHHHCCCEEECCCCCCCCCCEEEEEEEEECEECCCCCCCCCHHHHCCCCCEEEEEECCCH KWISQNYVNSSKYNQNTIYKMKWNYDYTWHQYATDVNWANGISGIMENLIGLYRGGSSLV HHHHHHCCCCCCCCCCEEEEEEECCCEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEE FEVPQYK EECCCCC >Mature Secondary Structure MKKKAALATLAMLPLGVVNAHADGDIGIVTINYLNVRNEPTAESSIAFVAKKDDKVLIKD CCCHHHHHHHHHHHHHEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCEEEEEE SSNGWYKIKAESGQEGWASSKYIAKSNSDSLRTSTNKEKQVISNSLNMRNGAGTSYRVIT CCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEE VLKKGQKVEVISESNGWSKIKYDGRLGYVSSSYLGDVSNSTNKSKTKQVNTTSLNVRSGP EECCCCEEEEEECCCCCEEEEECCEEEEEEHHHCCCCCCCCCCCCCEEEEEEEEEECCCC NTSYGLLGKLPKGSKVEVISESNGWSKIKYNGKDAYVSSMYLSDVSQSNSDNSSQSNDKK CCCCCCEECCCCCCEEEEEECCCCCEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCCCCC NTDKVVNTASLNVRSGPGSTYSKLGKVYKGSKVTVLSESSGWAKINFNNKEAFVVGNYLS CHHHHEEEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCEEEEEECEEC TSADTSNNNSNSNYDNSSNSNGNNSSSSGQVNGMSGISGAKIDYKSLSYTLESHISKQVE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHH KAASGGNVIAPSNRKSTPSPEFSTFSAQRTSSFVNASSSDIEYYLNPKNFTNTTKGMMQF HHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH LKINSYRDGISESSLNSYLNGLSSSVFKNQGAAFINAAKKYNIDVVYLVSHAMWETAYGK HHHCCHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCCCEEEEEEHHHHHHHHCCC STLAQGQTLTSYKGQPLSKPVKVYNFFGIGAIDKSANVSGAEAAYSNGWTSVETTIDGSA HHHHCCCEEECCCCCCCCCCEEEEEEEEECEECCCCCCCCCHHHHCCCCCEEEEEECCCH KWISQNYVNSSKYNQNTIYKMKWNYDYTWHQYATDVNWANGISGIMENLIGLYRGGSSLV HHHHHHCCCCCCCCCCEEEEEEECCCEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEE FEVPQYK EECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7934877; 7581999; 9384377 [H]