| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is fur [H]
Identifier: 126698884
GI number: 126698884
Start: 1495161
End: 1495619
Strand: Direct
Name: fur [H]
Synonym: CD1287
Alternate gene names: 126698884
Gene position: 1495161-1495619 (Clockwise)
Preceding gene: 126698883
Following gene: 126698886
Centisome position: 34.85
GC content: 30.07
Gene sequence:
>459_bases ATGGCAAATACAATGGATTTATTAAAAGACAAGTTAAAAGAAACTGGTTTTAAGATTACGCCACAAAGAAGAGCAATAGT TGAAATATTGCTTAAACATGACCATTCACATCTAAGTAGTGAGGAAATCTATGATTTAGTTAGGGTTGACTGTCCTGAAA TAGGCTTAGCTACTGTATATAGAACAATGCAGCTATTGGATGAAATAGGATTAATATCAAAACTAAACTTAGACGATGGA TGTATAAGATATGAGATTAGTCTACATAAAGAAGACTGTCATAATCATCATCATCTTATTTGTAAAAATTGTGGAAAGAT AATGGAAGCTAAAGAAGACCTTTTAGACAATATAGAAAAAGAGATACAATCATTGTACAAATTTAAAATACTTGATCATG ATGTTAAATTTTATGGACTATGTGACGAGTGTAATGGAGTAAGCGATTCAGAAGAATAA
Upstream 100 bases:
>100_bases GAATAAATTAAATTTATTTAAATGTCTTGACAAAAAATGAATTATCAATTACAATATTATTTAATAAAGATTATCAATTG AAAATAGTAAGGGTGATGTT
Downstream 100 bases:
>100_bases ACTTCTATTGCTTAATGTCGATGGAAGAATAGTATAGAACTTTTATATTCTATGCTATTCTTCCATTTTTTATTATAAAC CATCTATAAAATGCAAATAT
Product: ferric uptake regulation protein
Products: NA
Alternate protein names: Ferric uptake regulator [H]
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MANTMDLLKDKLKETGFKITPQRRAIVEILLKHDHSHLSSEEIYDLVRVDCPEIGLATVYRTMQLLDEIGLISKLNLDDG CIRYEISLHKEDCHNHHHLICKNCGKIMEAKEDLLDNIEKEIQSLYKFKILDHDVKFYGLCDECNGVSDSEE
Sequences:
>Translated_152_residues MANTMDLLKDKLKETGFKITPQRRAIVEILLKHDHSHLSSEEIYDLVRVDCPEIGLATVYRTMQLLDEIGLISKLNLDDG CIRYEISLHKEDCHNHHHLICKNCGKIMEAKEDLLDNIEKEIQSLYKFKILDHDVKFYGLCDECNGVSDSEE >Mature_151_residues ANTMDLLKDKLKETGFKITPQRRAIVEILLKHDHSHLSSEEIYDLVRVDCPEIGLATVYRTMQLLDEIGLISKLNLDDGC IRYEISLHKEDCHNHHHLICKNCGKIMEAKEDLLDNIEKEIQSLYKFKILDHDVKFYGLCDECNGVSDSEE
Specific function: Iron uptake repressor. Acts on the transcription of ferri-siderophore uptake genes [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
Organism=Escherichia coli, GI1786899, Length=132, Percent_Identity=34.8484848484849, Blast_Score=91, Evalue=2e-20,
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 17586; Mature: 17455
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 4.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANTMDLLKDKLKETGFKITPQRRAIVEILLKHDHSHLSSEEIYDLVRVDCPEIGLATVY CCCHHHHHHHHHHHCCCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHH RTMQLLDEIGLISKLNLDDGCIRYEISLHKEDCHNHHHLICKNCGKIMEAKEDLLDNIEK HHHHHHHHHCCHHCCCCCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH EIQSLYKFKILDHDVKFYGLCDECNGVSDSEE HHHHHHHHHHHCCCCCEEEECHHCCCCCCCCC >Mature Secondary Structure ANTMDLLKDKLKETGFKITPQRRAIVEILLKHDHSHLSSEEIYDLVRVDCPEIGLATVY CCHHHHHHHHHHHCCCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHH RTMQLLDEIGLISKLNLDDGCIRYEISLHKEDCHNHHHLICKNCGKIMEAKEDLLDNIEK HHHHHHHHHCCHHCCCCCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH EIQSLYKFKILDHDVKFYGLCDECNGVSDSEE HHHHHHHHHHHCCCCCEEEECHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377; 9701813 [H]