| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is 126698881
Identifier: 126698881
GI number: 126698881
Start: 1491712
End: 1493883
Strand: Direct
Name: 126698881
Synonym: CD1284
Alternate gene names: NA
Gene position: 1491712-1493883 (Clockwise)
Preceding gene: 126698880
Following gene: 126698882
Centisome position: 34.77
GC content: 29.33
Gene sequence:
>2172_bases ATGAGAAAAAAGATTATGTCGTTGTTTGCAATAGTCATTATGATTTTTGTATCAACTGCTAGCTATGGTTTTGCTGAAGA AAAAGGCAAGGTCATATTTATTGATATGAATAGGACCAATCTTGGAAGTATGATGAATATTCCAATCTTGAAAAATGAGA TAGAAAAGAGAGGCTATGTAGCTCTCATGAATATAAGAGGGGATCAAGGTACTGATGATAGAAGGTCTTATGCAAGTATG GGTGCAGGAACAAGAGCTAGTGTAACTACTGAAGACTATATCAATTTTCAAAAAGTAGACCAAGATACTGCTAAAGCTTT TGAAGTCGCAACAGGTCAAAAAGCTAAAGAAATAAATGATTTAGGCATTAATAGATCTATAAATGAAAATCTTGAGTATG GAGAATATGGAGCAAATTTAGGGTCATTAGGAAAAACTTTATCAGAAAATGGTTTAAAGACATCTGTAATTGGAAATGCT GATATAATTGAAAATAATCAATTAGTTAAAAACAGAAACTTATGTTTAGTAGCTATGGACCAATATGGAAGGATTGATTC AGGTAATATTGATAATATTAATAAGAAAGATTCTAAAATGCCATTTGGAATATCTACAGATTATGATAAATTACTAGATG AAACTAAAAAATCCTATAAAAATAGTGATGCTATATTTGTAGAACTTGGAGATACATATAGATTAGATATGTATAGATTA AATCTAAATGATAATACTTATGATATAATGAAGAAAAATATTGTAAAAAATATAAATAAATATCTTGAACAAGTATTTTC TATGGTTGGAGAAAATGACACTGTTTATATAGCAAGTGCATTTCCAAGTGACCTAGATTATAAGAATAAGAGAAGACTTT CTCCAATAATAAAATTTAGTGGAGAAGGGAAAGGTCTACTGGAATCTGCCACAACAAGAAAGGCTGGAATTGTTGCCAAT TTAGATGTTGGAGTAGATATACTAGGTACATTTGGTCTTGAAAATAAAGAGATGGTAGGTAGAAGTTATACTTTAGTAAA TAAAGAGGACAATATTAGCTATCTAAAATCACTTTATGAAAGGATAGTGTCTATATCTTCAATAAGGTCAACTATTATAA ATGGCTTTGTAGGCGTAATATCTGCTTCTTGGGTAATTGCCATGTTTGCGATTTTCTTTAGAAATTATATGCCACATAAA GAGCGTGTATTCAAAGTACTTAAGGAGTTTATAAAATTAGGCATAATAATGCCACTATCATTTATGTTAGCTCCTTTGAT GAATTTTAAAACTCCAATTTCAATATCTTTGGGAATATTTGCAACTACGCTAATATTATACTTGTTAGGTAGAAAATTAT TTAAGGACAATGATATAAAGCACATGGGATTTTTTGCAACACTTACTATTTTAGTCATAGTTATAGATTCTGTATTTGGA ACATACTTAATGCAAAATAACATAATGAGTTATGATGCTGTCATAGGAGCTAGGTACTATGGTGTAGGAAATGAATATGA AGGTGTAACTATAGCAAGTGCAGTATTTGGCTTAGCAGTATTATTACATTATAAGAAGGTATCTAAATTACTTGTTGTAA TTTTTTCATTAATAATACTTATAACTAGTGCATATCCTTCAATGGGTGCAAATGTTGGTGGAGCTATATCAGAATGTGTA GCATATTTGTTGTTTATAATGCTTATATATGACATTAAAATAGATTTTAAGAAAGCTGTATTATTAGCTGTTTCAGCTGT AGTTGTCGTTTTTGCATTTGCAGCTTTAGATATACTTTCAGGTAGTGAATCTCATTTAGGTATGTTTGTACAGAGAATTT TCCTAAATGGACCAGGAGAGATATTACAAACATTTGGAAGAAAAATTCAAATGAATATGCAACTAGCACAGACAAGTGTA TGGGTAAATATTTTACTTGTAGGAATTGGAGTAATTGCAGTGCTTATATTTAAACCATCTAGACACTTTAGAAAGATAAT GAATAATTTTCCAATCTTGTTTAAAGGGTTTATTGCATCTATGGTTGGTTGTATAATTACTCTTTTAGTTAATGATTCTG GAATAGTTGCTGCATCTACAGCATCTATATATATACTTATACCACTAATAATAATAAGTATAAATATGATAATATTTGAA AAAAATAACTAA
Upstream 100 bases:
>100_bases TAGTCATAAAAATGCAAGAGCTATAATTAAAAAATTTGAAAGAGATGAGATACTTGAAGAAGTAATCACGCACTATCTGA ATAGAAAGTAGGTCAAATAA
Downstream 100 bases:
>100_bases AAAAATTTTTACTGTTCATATAGGATTTAAATAAAAAATGCAATATGATTATTAATGTAAACTGGATGCTTACATAAAAA ATCATATTGCAATTTTTATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 723; Mature: 723
Protein sequence:
>723_residues MRKKIMSLFAIVIMIFVSTASYGFAEEKGKVIFIDMNRTNLGSMMNIPILKNEIEKRGYVALMNIRGDQGTDDRRSYASM GAGTRASVTTEDYINFQKVDQDTAKAFEVATGQKAKEINDLGINRSINENLEYGEYGANLGSLGKTLSENGLKTSVIGNA DIIENNQLVKNRNLCLVAMDQYGRIDSGNIDNINKKDSKMPFGISTDYDKLLDETKKSYKNSDAIFVELGDTYRLDMYRL NLNDNTYDIMKKNIVKNINKYLEQVFSMVGENDTVYIASAFPSDLDYKNKRRLSPIIKFSGEGKGLLESATTRKAGIVAN LDVGVDILGTFGLENKEMVGRSYTLVNKEDNISYLKSLYERIVSISSIRSTIINGFVGVISASWVIAMFAIFFRNYMPHK ERVFKVLKEFIKLGIIMPLSFMLAPLMNFKTPISISLGIFATTLILYLLGRKLFKDNDIKHMGFFATLTILVIVIDSVFG TYLMQNNIMSYDAVIGARYYGVGNEYEGVTIASAVFGLAVLLHYKKVSKLLVVIFSLIILITSAYPSMGANVGGAISECV AYLLFIMLIYDIKIDFKKAVLLAVSAVVVVFAFAALDILSGSESHLGMFVQRIFLNGPGEILQTFGRKIQMNMQLAQTSV WVNILLVGIGVIAVLIFKPSRHFRKIMNNFPILFKGFIASMVGCIITLLVNDSGIVAASTASIYILIPLIIISINMIIFE KNN
Sequences:
>Translated_723_residues MRKKIMSLFAIVIMIFVSTASYGFAEEKGKVIFIDMNRTNLGSMMNIPILKNEIEKRGYVALMNIRGDQGTDDRRSYASM GAGTRASVTTEDYINFQKVDQDTAKAFEVATGQKAKEINDLGINRSINENLEYGEYGANLGSLGKTLSENGLKTSVIGNA DIIENNQLVKNRNLCLVAMDQYGRIDSGNIDNINKKDSKMPFGISTDYDKLLDETKKSYKNSDAIFVELGDTYRLDMYRL NLNDNTYDIMKKNIVKNINKYLEQVFSMVGENDTVYIASAFPSDLDYKNKRRLSPIIKFSGEGKGLLESATTRKAGIVAN LDVGVDILGTFGLENKEMVGRSYTLVNKEDNISYLKSLYERIVSISSIRSTIINGFVGVISASWVIAMFAIFFRNYMPHK ERVFKVLKEFIKLGIIMPLSFMLAPLMNFKTPISISLGIFATTLILYLLGRKLFKDNDIKHMGFFATLTILVIVIDSVFG TYLMQNNIMSYDAVIGARYYGVGNEYEGVTIASAVFGLAVLLHYKKVSKLLVVIFSLIILITSAYPSMGANVGGAISECV AYLLFIMLIYDIKIDFKKAVLLAVSAVVVVFAFAALDILSGSESHLGMFVQRIFLNGPGEILQTFGRKIQMNMQLAQTSV WVNILLVGIGVIAVLIFKPSRHFRKIMNNFPILFKGFIASMVGCIITLLVNDSGIVAASTASIYILIPLIIISINMIIFE KNN >Mature_723_residues MRKKIMSLFAIVIMIFVSTASYGFAEEKGKVIFIDMNRTNLGSMMNIPILKNEIEKRGYVALMNIRGDQGTDDRRSYASM GAGTRASVTTEDYINFQKVDQDTAKAFEVATGQKAKEINDLGINRSINENLEYGEYGANLGSLGKTLSENGLKTSVIGNA DIIENNQLVKNRNLCLVAMDQYGRIDSGNIDNINKKDSKMPFGISTDYDKLLDETKKSYKNSDAIFVELGDTYRLDMYRL NLNDNTYDIMKKNIVKNINKYLEQVFSMVGENDTVYIASAFPSDLDYKNKRRLSPIIKFSGEGKGLLESATTRKAGIVAN LDVGVDILGTFGLENKEMVGRSYTLVNKEDNISYLKSLYERIVSISSIRSTIINGFVGVISASWVIAMFAIFFRNYMPHK ERVFKVLKEFIKLGIIMPLSFMLAPLMNFKTPISISLGIFATTLILYLLGRKLFKDNDIKHMGFFATLTILVIVIDSVFG TYLMQNNIMSYDAVIGARYYGVGNEYEGVTIASAVFGLAVLLHYKKVSKLLVVIFSLIILITSAYPSMGANVGGAISECV AYLLFIMLIYDIKIDFKKAVLLAVSAVVVVFAFAALDILSGSESHLGMFVQRIFLNGPGEILQTFGRKIQMNMQLAQTSV WVNILLVGIGVIAVLIFKPSRHFRKIMNNFPILFKGFIASMVGCIITLLVNDSGIVAASTASIYILIPLIIISINMIIFE KNN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80403; Mature: 80403
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKKIMSLFAIVIMIFVSTASYGFAEEKGKVIFIDMNRTNLGSMMNIPILKNEIEKRGYV CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEECCCHHHHHHHCCCCE ALMNIRGDQGTDDRRSYASMGAGTRASVTTEDYINFQKVDQDTAKAFEVATGQKAKEIND EEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHCCHHHCCHHHHHHHHHHCCCHHHHHHH LGINRSINENLEYGEYGANLGSLGKTLSENGLKTSVIGNADIIENNQLVKNRNLCLVAMD CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEECCCCEEECCCEEEEEEC QYGRIDSGNIDNINKKDSKMPFGISTDYDKLLDETKKSYKNSDAIFVELGDTYRLDMYRL CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCEEEEEEEEE NLNDNTYDIMKKNIVKNINKYLEQVFSMVGENDTVYIASAFPSDLDYKNKRRLSPIIKFS ECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHCCHHEEEC GEGKGLLESATTRKAGIVANLDVGVDILGTFGLENKEMVGRSYTLVNKEDNISYLKSLYE CCCCCHHHHHCCCCCCEEEECCCCCEEHEECCCCCHHHCCCEEEEECCCCCHHHHHHHHH RIVSISSIRSTIINGFVGVISASWVIAMFAIFFRNYMPHKERVFKVLKEFIKLGIIMPLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH FMLAPLMNFKTPISISLGIFATTLILYLLGRKLFKDNDIKHMGFFATLTILVIVIDSVFG HHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH TYLMQNNIMSYDAVIGARYYGVGNEYEGVTIASAVFGLAVLLHYKKVSKLLVVIFSLIIL HHHHHCCCCHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITSAYPSMGANVGGAISECVAYLLFIMLIYDIKIDFKKAVLLAVSAVVVVFAFAALDILS HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC GSESHLGMFVQRIFLNGPGEILQTFGRKIQMNMQLAQTSVWVNILLVGIGVIAVLIFKPS CCCHHHHHHHHHHHHCCCHHHHHHHCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RHFRKIMNNFPILFKGFIASMVGCIITLLVNDSGIVAASTASIYILIPLIIISINMIIFE HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCEEEEEE KNN CCC >Mature Secondary Structure MRKKIMSLFAIVIMIFVSTASYGFAEEKGKVIFIDMNRTNLGSMMNIPILKNEIEKRGYV CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEECCCHHHHHHHCCCCE ALMNIRGDQGTDDRRSYASMGAGTRASVTTEDYINFQKVDQDTAKAFEVATGQKAKEIND EEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHCCHHHCCHHHHHHHHHHCCCHHHHHHH LGINRSINENLEYGEYGANLGSLGKTLSENGLKTSVIGNADIIENNQLVKNRNLCLVAMD CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEECCCCEEECCCEEEEEEC QYGRIDSGNIDNINKKDSKMPFGISTDYDKLLDETKKSYKNSDAIFVELGDTYRLDMYRL CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCEEEEEEEEE NLNDNTYDIMKKNIVKNINKYLEQVFSMVGENDTVYIASAFPSDLDYKNKRRLSPIIKFS ECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHCCHHEEEC GEGKGLLESATTRKAGIVANLDVGVDILGTFGLENKEMVGRSYTLVNKEDNISYLKSLYE CCCCCHHHHHCCCCCCEEEECCCCCEEHEECCCCCHHHCCCEEEEECCCCCHHHHHHHHH RIVSISSIRSTIINGFVGVISASWVIAMFAIFFRNYMPHKERVFKVLKEFIKLGIIMPLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH FMLAPLMNFKTPISISLGIFATTLILYLLGRKLFKDNDIKHMGFFATLTILVIVIDSVFG HHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH TYLMQNNIMSYDAVIGARYYGVGNEYEGVTIASAVFGLAVLLHYKKVSKLLVVIFSLIIL HHHHHCCCCHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITSAYPSMGANVGGAISECVAYLLFIMLIYDIKIDFKKAVLLAVSAVVVVFAFAALDILS HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC GSESHLGMFVQRIFLNGPGEILQTFGRKIQMNMQLAQTSVWVNILLVGIGVIAVLIFKPS CCCHHHHHHHHHHHHCCCHHHHHHHCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RHFRKIMNNFPILFKGFIASMVGCIITLLVNDSGIVAASTASIYILIPLIIISINMIIFE HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCEEEEEE KNN CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA