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The map label for this gene is smf [H]

Identifier: 126698870

GI number: 126698870

Start: 1478352

End: 1479461

Strand: Direct

Name: smf [H]

Synonym: CD1273

Alternate gene names: 126698870

Gene position: 1478352-1479461 (Clockwise)

Preceding gene: 126698869

Following gene: 126698871

Centisome position: 34.46

GC content: 25.14

Gene sequence:

>1110_bases
GTGGATTTTATGGAAAAAAGAGATACTTATTTATGGTTAAAATCAATTGGTGGAATAACAACAAAAACAATTGAAATAAT
AGAAAATGAAATAGTAAATATTGAAGATATATTTGATTTTTCTGAAAAAGAAATATATAATTTAAAAAATATAAGCTTGA
ATATTAGAAAAAATATAGTAAAATATAGAGGTCACGCTTATTTAGAAAATATAAAAGAACTACTTTACAAAAAAGCGATT
AAATATATTTGTAAATATGATAAAGAATATCCTGAAAATTTAAAGAATATATACAACGCTCCAAAGTTATTATTCTACAA
AGGTGACATAGGCTTAGTTAATAATAATTTTAATATAGCTATAGTAGGTTCAAGAAAACCTACAGCCTATGGAATTAATT
GTGCAAAAACAATAAGTTGTCAACTATCCCAATATGGAGTTAATATAGTAAGTGGATTAGCTATAGGAATAGATGCATAC
TCGCACATAGGTTGTATGAGTGGAAAATCTAAAACTATAGCAGTACTTGGTTCAGGAGTAGACAATCCTCTTCCAAAACA
AAATTTACATTTATCAAATAAAATATTAGAAAATGGGGGATTATTATTATCAGAGTATAATATTAACTCGACAGTAGCCC
CGTACCATTTTTCTAATAGAAATAGAATTATCAGTGGTTTAAGTGATGGAGTAGTTGTTGTAGAAGCAGCAATAAAAAGT
GGTGCACTAATCACAGTAGATTTTGCTCTTGAACATGGAAAAAATGTTTTTGCAATACCTGGTAATATAAATTCTCAAAT
GAGTAGAGGTTGTCATAAAATTATAAAAGAAGGTGCAAAATTAATTGAAAATATAGATGATATTTTAAATGAATATAACA
TATTTAATATTATTGATAAAAAAATAAATCAAAAATATGATAATATAAGTCTAAATGCCAAGTCTAAGCAAATAATTGAA
GCTATAAAAAGAGAAGGAAACTTGCATATAGATAGTATTTGTGATTATACTGGTATAGAAATAAAGTATGTAAATTCAAT
AATCAATGAATTAGTACTAAATGAGTTAGTAGTAGAAATGAATAATAAAACGTACAGTTTAAATGTATAA

Upstream 100 bases:

>100_bases
AGCAGATTTAGAAGAAAGAGATTTGATAAATTCACAGTGTATTATAGAAGCTTTTTCATTTAGAAAGGCTTATTATAGTT
ATTTTAAATAGTTTTTTGAG

Downstream 100 bases:

>100_bases
ATTAAGATTAGGTAGTGGGGGTGTATGGTTTTATGGCCAAAACATTAGTCATCGTAGAATCGCCTGCAAAAGCTAAAACT
ATAGAAAAATTTTTAGGGAA

Product: competence protein

Products: NA

Alternate protein names: DNA-processing chain A [H]

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MDFMEKRDTYLWLKSIGGITTKTIEIIENEIVNIEDIFDFSEKEIYNLKNISLNIRKNIVKYRGHAYLENIKELLYKKAI
KYICKYDKEYPENLKNIYNAPKLLFYKGDIGLVNNNFNIAIVGSRKPTAYGINCAKTISCQLSQYGVNIVSGLAIGIDAY
SHIGCMSGKSKTIAVLGSGVDNPLPKQNLHLSNKILENGGLLLSEYNINSTVAPYHFSNRNRIISGLSDGVVVVEAAIKS
GALITVDFALEHGKNVFAIPGNINSQMSRGCHKIIKEGAKLIENIDDILNEYNIFNIIDKKINQKYDNISLNAKSKQIIE
AIKREGNLHIDSICDYTGIEIKYVNSIINELVLNELVVEMNNKTYSLNV

Sequences:

>Translated_369_residues
MDFMEKRDTYLWLKSIGGITTKTIEIIENEIVNIEDIFDFSEKEIYNLKNISLNIRKNIVKYRGHAYLENIKELLYKKAI
KYICKYDKEYPENLKNIYNAPKLLFYKGDIGLVNNNFNIAIVGSRKPTAYGINCAKTISCQLSQYGVNIVSGLAIGIDAY
SHIGCMSGKSKTIAVLGSGVDNPLPKQNLHLSNKILENGGLLLSEYNINSTVAPYHFSNRNRIISGLSDGVVVVEAAIKS
GALITVDFALEHGKNVFAIPGNINSQMSRGCHKIIKEGAKLIENIDDILNEYNIFNIIDKKINQKYDNISLNAKSKQIIE
AIKREGNLHIDSICDYTGIEIKYVNSIINELVLNELVVEMNNKTYSLNV
>Mature_369_residues
MDFMEKRDTYLWLKSIGGITTKTIEIIENEIVNIEDIFDFSEKEIYNLKNISLNIRKNIVKYRGHAYLENIKELLYKKAI
KYICKYDKEYPENLKNIYNAPKLLFYKGDIGLVNNNFNIAIVGSRKPTAYGINCAKTISCQLSQYGVNIVSGLAIGIDAY
SHIGCMSGKSKTIAVLGSGVDNPLPKQNLHLSNKILENGGLLLSEYNINSTVAPYHFSNRNRIISGLSDGVVVVEAAIKS
GALITVDFALEHGKNVFAIPGNINSQMSRGCHKIIKEGAKLIENIDDILNEYNIFNIIDKKINQKYDNISLNAKSKQIIE
AIKREGNLHIDSICDYTGIEIKYVNSIINELVLNELVVEMNNKTYSLNV

Specific function: Essential for efficient chromosomal DNA transformation but not required for plasmid transformation [H]

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=229, Percent_Identity=38.8646288209607, Blast_Score=164, Evalue=7e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 41426; Mature: 41426

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFMEKRDTYLWLKSIGGITTKTIEIIENEIVNIEDIFDFSEKEIYNLKNISLNIRKNIV
CCCCHHHCCEEEEHHCCCCHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCEEEHHHHHHH
KYRGHAYLENIKELLYKKAIKYICKYDKEYPENLKNIYNAPKLLFYKGDIGLVNNNFNIA
HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEECCEEEEECCEEEE
IVGSRKPTAYGINCAKTISCQLSQYGVNIVSGLAIGIDAYSHIGCMSGKSKTIAVLGSGV
EEECCCCCEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
DNPLPKQNLHLSNKILENGGLLLSEYNINSTVAPYHFSNRNRIISGLSDGVVVVEAAIKS
CCCCCCCCCCHHHHHHHCCCEEEEEECCCCEECCEEECCCCCEECCCCCCEEEEEEHHCC
GALITVDFALEHGKNVFAIPGNINSQMSRGCHKIIKEGAKLIENIDDILNEYNIFNIIDK
CCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
KINQKYDNISLNAKSKQIIEAIKREGNLHIDSICDYTGIEIKYVNSIINELVLNELVVEM
HHCCCCCCEEECCCHHHHHHHHHHCCCEEEHHHCCCCCCEEHHHHHHHHHHHHHHHHHEE
NNKTYSLNV
CCCEEEEEC
>Mature Secondary Structure
MDFMEKRDTYLWLKSIGGITTKTIEIIENEIVNIEDIFDFSEKEIYNLKNISLNIRKNIV
CCCCHHHCCEEEEHHCCCCHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCEEEHHHHHHH
KYRGHAYLENIKELLYKKAIKYICKYDKEYPENLKNIYNAPKLLFYKGDIGLVNNNFNIA
HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEECCEEEEECCEEEE
IVGSRKPTAYGINCAKTISCQLSQYGVNIVSGLAIGIDAYSHIGCMSGKSKTIAVLGSGV
EEECCCCCEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
DNPLPKQNLHLSNKILENGGLLLSEYNINSTVAPYHFSNRNRIISGLSDGVVVVEAAIKS
CCCCCCCCCCHHHHHHHCCCEEEEEECCCCEECCEEECCCCCEECCCCCCEEEEEEHHCC
GALITVDFALEHGKNVFAIPGNINSQMSRGCHKIIKEGAKLIENIDDILNEYNIFNIIDK
CCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
KINQKYDNISLNAKSKQIIEAIKREGNLHIDSICDYTGIEIKYVNSIINELVLNELVVEM
HHCCCCCCEEECCCHHHHHHHHHHCCCEEEHHHCCCCCCEEHHHHHHHHHHHHHHHHHEE
NNKTYSLNV
CCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7768823; 7542800 [H]