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The map label for this gene is yraN [C]

Identifier: 126698868

GI number: 126698868

Start: 1476366

End: 1476710

Strand: Direct

Name: yraN [C]

Synonym: CD1271

Alternate gene names: 126698868

Gene position: 1476366-1476710 (Clockwise)

Preceding gene: 126698861

Following gene: 126698869

Centisome position: 34.41

GC content: 25.51

Gene sequence:

>345_bases
ATGAATAATAAAGAAAAAGGTGATTTTGGAGAAAAAGTAGCAGTTAATTATTTGCTATCAAAAGGAGCAAAGATACTAGA
AAAAAATTACAGATTAAAGATAGGGGAAATAGATATAATAGCAAAAATGGAAGATGAAATTATATTTGTGGAGGTGAAAT
CAAGGTCTAACATAAAGTTTGGCTACCCTTGTGAATCTGTAAGCTTCAAAAAAAGAAAAAAGATAATTGGAGTTGCAAGT
TATTATATTATAAAAAATAACTTAAATAACACTCCCATAAGATTTGATGTTATAGAGGTATATTTATTAGAAAAAAGAAT
AAATCACATAATGAATGCTTTTTAA

Upstream 100 bases:

>100_bases
ATTAATATTGATGGAAATAAAATCAATCCAAAAACTTGAATAGTAAAATTGTATACTGACAATAATTTAAAAGTGAAAAT
TTAATGTATTGGAGTGAATA

Downstream 100 bases:

>100_bases
AAAAGATAATGTTTTTGGAAAGGATTAAATATGTTAAGTATTATTAATTCAAGCAACTTAGTAGGAATCGACAGCTTTTT
AGTTAAGGTTGAAGTAGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MNNKEKGDFGEKVAVNYLLSKGAKILEKNYRLKIGEIDIIAKMEDEIIFVEVKSRSNIKFGYPCESVSFKKRKKIIGVAS
YYIIKNNLNNTPIRFDVIEVYLLEKRINHIMNAF

Sequences:

>Translated_114_residues
MNNKEKGDFGEKVAVNYLLSKGAKILEKNYRLKIGEIDIIAKMEDEIIFVEVKSRSNIKFGYPCESVSFKKRKKIIGVAS
YYIIKNNLNNTPIRFDVIEVYLLEKRINHIMNAF
>Mature_114_residues
MNNKEKGDFGEKVAVNYLLSKGAKILEKNYRLKIGEIDIIAKMEDEIIFVEVKSRSNIKFGYPCESVSFKKRKKIIGVAS
YYIIKNNLNNTPIRFDVIEVYLLEKRINHIMNAF

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1271_CLOD6 (Q18BD4)

Other databases:

- EMBL:   AM180355
- RefSeq:   YP_001087765.1
- ProteinModelPortal:   Q18BD4
- STRING:   Q18BD4
- GeneID:   4915864
- GenomeReviews:   AM180355_GR
- KEGG:   cdf:CD1271
- NMPDR:   fig|1496.1.peg.19
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- OMA:   KQRQISK
- ProtClustDB:   PRK12497
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 13264; Mature: 13264

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKEKGDFGEKVAVNYLLSKGAKILEKNYRLKIGEIDIIAKMEDEIIFVEVKSRSNIKF
CCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCEEEEEECCCCEEEEEECCCCCEEE
GYPCESVSFKKRKKIIGVASYYIIKNNLNNTPIRFDVIEVYLLEKRINHIMNAF
CCCCCCCCHHHHHHEEEHEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNNKEKGDFGEKVAVNYLLSKGAKILEKNYRLKIGEIDIIAKMEDEIIFVEVKSRSNIKF
CCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCEEEEEECCCCEEEEEECCCCCEEE
GYPCESVSFKKRKKIIGVASYYIIKNNLNNTPIRFDVIEVYLLEKRINHIMNAF
CCCCCCCCHHHHHHEEEHEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA