| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698815
Identifier: 126698815
GI number: 126698815
Start: 1417401
End: 1418468
Strand: Direct
Name: 126698815
Synonym: CD1219
Alternate gene names: NA
Gene position: 1417401-1418468 (Clockwise)
Preceding gene: 126698814
Following gene: 126698816
Centisome position: 33.04
GC content: 29.31
Gene sequence:
>1068_bases ATGATAAGCAAAAGAGTGGGGATTGTTGAATCAATAGTAAGTCAAACTGAAACTCTAGATGATATAAGAGTAAATATAAA TGGAGAAATACAAAGGGCATATAATTATCCAAAAATATCTGGAACTATAAATATAGGTGACGAAGTGGTTTTAAATACAA CAGCAGTAGAACTGAGCTTAGGTACAGGTGGATACCATTTTGTAATAACTAATTTAAATAATATAGAATCTACTTTAACT GAAGGTGGACATATAATGAAACTTAGATATACGCCTCTTCAAATAAAAGTGGATTCTGTTGAGGAACAAGAAAGTATTTA TCATGATAAATTTGCGAATTTTAAAGGATTAGAAGGTCTTTCTGTTGTAGTAGGGACTCTTCATAGTATGTTAACTCCAT TTGCAGCTTCATTTAAAAGAAATAATCCAAATAAAAAATTAGTGTATATAATGACTGATGGAGCATCTCTTCCAATTTAT TTAAGTAAAAATGTGGATACTTTAAAAGAAAAAAAATTAATAGATAGTACAATAACTATAGGAAATGCGTTTGGTGGAGA TTATGAATGTATAAATATATATACTGCATTAATTACAGCAAAAGAAATACTAAAAGCGGATGCAGTATTTGTCAGTATGG GACCTGGAATTGCTGGGACAGGAACAAAATATGGATTTACAGGGATTGAACAAGGCTCTATTCTTGATGCCGTAAAAAAA CTTGAAGGAAGAGCAATTGCAATTCCAAGAATTAGTTTTGCTGACAAACGAGAAAGACATCAAGGTATTTCACATCATAG TATGACTGTATTTAAAGAAATTGTAAATGTAAATGTAGACATACCAATAACTATATATGATGATGAAAAATTGAACTTTA TAAAAGAGCAAATCAATTTAAATGGTTTAGACAAAAAGCATAATATAATTTATATAGATAATAATAAAACGAAAGAGGAT TTAGACTATTTTAATCTAAAAGTAAAGAGTATGGGAAGAAATTATGAACAAGATGAGGCATTTTTCAAAGCTGCAAGCAC AGCAGCATATTACTTAATGGAGGTTTAA
Upstream 100 bases:
>100_bases GTAGTTATTATGCATATATTCACTGAGAAATACTCATTAACTAAGATAATAGAAAAAAATAAACTATTAAATTTTATAGA TAAATTGGGAAGGTAGTATT
Downstream 100 bases:
>100_bases GATGGTATTAGAAGAAAAAACTATTAGTAGTGATAGGGTTTATACAGGTAAAGTAATTACTTTAAAGGTTGATACTGTTG AAATTCCAGGGCAAGGATAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 355; Mature: 355
Protein sequence:
>355_residues MISKRVGIVESIVSQTETLDDIRVNINGEIQRAYNYPKISGTINIGDEVVLNTTAVELSLGTGGYHFVITNLNNIESTLT EGGHIMKLRYTPLQIKVDSVEEQESIYHDKFANFKGLEGLSVVVGTLHSMLTPFAASFKRNNPNKKLVYIMTDGASLPIY LSKNVDTLKEKKLIDSTITIGNAFGGDYECINIYTALITAKEILKADAVFVSMGPGIAGTGTKYGFTGIEQGSILDAVKK LEGRAIAIPRISFADKRERHQGISHHSMTVFKEIVNVNVDIPITIYDDEKLNFIKEQINLNGLDKKHNIIYIDNNKTKED LDYFNLKVKSMGRNYEQDEAFFKAASTAAYYLMEV
Sequences:
>Translated_355_residues MISKRVGIVESIVSQTETLDDIRVNINGEIQRAYNYPKISGTINIGDEVVLNTTAVELSLGTGGYHFVITNLNNIESTLT EGGHIMKLRYTPLQIKVDSVEEQESIYHDKFANFKGLEGLSVVVGTLHSMLTPFAASFKRNNPNKKLVYIMTDGASLPIY LSKNVDTLKEKKLIDSTITIGNAFGGDYECINIYTALITAKEILKADAVFVSMGPGIAGTGTKYGFTGIEQGSILDAVKK LEGRAIAIPRISFADKRERHQGISHHSMTVFKEIVNVNVDIPITIYDDEKLNFIKEQINLNGLDKKHNIIYIDNNKTKED LDYFNLKVKSMGRNYEQDEAFFKAASTAAYYLMEV >Mature_355_residues MISKRVGIVESIVSQTETLDDIRVNINGEIQRAYNYPKISGTINIGDEVVLNTTAVELSLGTGGYHFVITNLNNIESTLT EGGHIMKLRYTPLQIKVDSVEEQESIYHDKFANFKGLEGLSVVVGTLHSMLTPFAASFKRNNPNKKLVYIMTDGASLPIY LSKNVDTLKEKKLIDSTITIGNAFGGDYECINIYTALITAKEILKADAVFVSMGPGIAGTGTKYGFTGIEQGSILDAVKK LEGRAIAIPRISFADKRERHQGISHHSMTVFKEIVNVNVDIPITIYDDEKLNFIKEQINLNGLDKKHNIIYIDNNKTKED LDYFNLKVKSMGRNYEQDEAFFKAASTAAYYLMEV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39511; Mature: 39511
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISKRVGIVESIVSQTETLDDIRVNINGEIQRAYNYPKISGTINIGDEVVLNTTAVELSL CCCCHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCEEEEEEECCCEEEEEEEEEEEEE GTGGYHFVITNLNNIESTLTEGGHIMKLRYTPLQIKVDSVEEQESIYHDKFANFKGLEGL CCCCEEEEEECCCHHHHHHHCCCEEEEEEECEEEEEECCCHHHHHHHHHHHCCCCCCCHH SVVVGTLHSMLTPFAASFKRNNPNKKLVYIMTDGASLPIYLSKNVDTLKEKKLIDSTITI HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHEEEE GNAFGGDYECINIYTALITAKEILKADAVFVSMGPGIAGTGTKYGFTGIEQGSILDAVKK CCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH LEGRAIAIPRISFADKRERHQGISHHSMTVFKEIVNVNVDIPITIYDDEKLNFIKEQINL HCCCEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCC NGLDKKHNIIYIDNNKTKEDLDYFNLKVKSMGRNYEQDEAFFKAASTAAYYLMEV CCCCCCCCEEEEECCCCHHCHHHHEEEEECCCCCCCHHHHHHHHHCCEEEEEEEC >Mature Secondary Structure MISKRVGIVESIVSQTETLDDIRVNINGEIQRAYNYPKISGTINIGDEVVLNTTAVELSL CCCCHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCEEEEEEECCCEEEEEEEEEEEEE GTGGYHFVITNLNNIESTLTEGGHIMKLRYTPLQIKVDSVEEQESIYHDKFANFKGLEGL CCCCEEEEEECCCHHHHHHHCCCEEEEEEECEEEEEECCCHHHHHHHHHHHCCCCCCCHH SVVVGTLHSMLTPFAASFKRNNPNKKLVYIMTDGASLPIYLSKNVDTLKEKKLIDSTITI HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHEEEE GNAFGGDYECINIYTALITAKEILKADAVFVSMGPGIAGTGTKYGFTGIEQGSILDAVKK CCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH LEGRAIAIPRISFADKRERHQGISHHSMTVFKEIVNVNVDIPITIYDDEKLNFIKEQINL HCCCEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCC NGLDKKHNIIYIDNNKTKEDLDYFNLKVKSMGRNYEQDEAFFKAASTAAYYLMEV CCCCCCCCEEEEECCCCHHCHHHHEEEEECCCCCCCHHHHHHHHHCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA