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The map label for this gene is stc [H]

Identifier: 126698782

GI number: 126698782

Start: 1386557

End: 1388557

Strand: Direct

Name: stc [H]

Synonym: CD1186

Alternate gene names: 126698782

Gene position: 1386557-1388557 (Clockwise)

Preceding gene: 126698781

Following gene: 126698783

Centisome position: 32.32

GC content: 27.24

Gene sequence:

>2001_bases
ATGAAACAATCAATAGCTATAGTAACTGATAAAATAACTAAACTATCATCTTTCTTAGAAGAAAATATACGTTTGGTTTT
AGGTAATTATATTGATATAAACCACTATTATCTGGAAGTTTTAAGAGAGAATGATAAAATACAAGGTGATTTTGTACTAG
TAATGAATGACGATAGATTAAACAGTATGAGAAAGCATTTAGTACAAGATAGTAAGATTATAGTGATAAGGAGAACACTT
AAAGAAAATGAAATATATGGATTATTTTCAATACCAAATGGAACTGAAGTATTGGTTGTAAATGATACAAAAGAAACTAC
CTTAGAAACGATAAGCTTATTTTACAAAATAGGAGTAAAAAATTTAAAGTTTACTCCATATATTGAAGGAAAAATTTATA
AAAATATAGACATAGCTATAACGCCTGGAGTAAAGGGAAAAGTACCAAGTTATATAAATAAAGTAATCGACCTTGGAAAT
AGATATATTGATATATCTACCTTTATAGAAATAATAAATGGTCTTAGAATAGATGTTAAAGAAATACGTAAAAATTTAAT
GGCATATTCTGAGAGTTTAATAAGTTTAGATAATGGAGTTAAAGATAATTATAGGCAACTGTTTTTAAAAATAGAAGAAC
AAGATGTTATATTGAATCTATCAAAAGATGGAATAATATTTACTTCAGCAGATGGTATAATAAACACATTTAATAAAGAA
GCTTTAAAAATTTTAGGTATAAATGAAAATCCACAAGGCAAAAACATAGAAGATATCATTTCTGAAGATTTAAATATTTT
ACTTGAAGACAAAGAAATAATTGATGAAGTGGTATTTACAAATAAAAAATATATAAATGTAAATAAAAAAAATATTTTTT
CTATGGGGAATAAAGCTGGGATATATTATAACTTACAAGAAATAACGTATATAAAAAAATTAGAACAAAATCTTACTAAT
AAATTAAGAGAACAAGGTCAGATAGCAAGATATACATTTAAAGATATAAAAACTAAAAATAAAAATATGGTAAAGTGTGT
AGAATTGGCTAAAAAAATATCTAAATCAGACCTTTCTGTATTAATAATAGGAGAAAGTGGTACTGGTAAAGAATTATTAT
CACAATCAATTCATAATGCTTCCAATAGAAGTAATCAACCGTTTATAGCAGTTAATTGTGCAGCAGTTCCAGATAGTCTA
TTAGAAAGTCAACTGTTTGGATATGAAAAAGGCTCTTTTACAGGAGCTTTAAGAGAAGGAAAAAAGGGTCTATTTGAACT
TGCTAATAATGGAACTATATTTCTGGATGAAATTGGAGATATGCCTCCATTGCTACAGACAAAGTTACTAAGGGTATTAC
AAGAAAAGCAGGTTATGCCTATAGGTTCCCATAATGTTATAAACATAGATGTTAGGGTCATAGCAGCAACAAACAAAAAC
TTACTAAAGATGATTAGAGAAGGAAAATTTAGAGAAGACCTGTATTATAGACTAAATGTATTGCCAATAGATGTACCATC
ATTGAGGAATAGAAAAGAAGATATAATAACACTTATGAATTTCTTTTTGAAAAACAATATAAGACTTTCGCCAGAAGTTA
TAACTATTTTAGAAAAATATAATTGGCCAGGAAATATAAGAGAGTTACAAAATGTTGCTTCTTATGTAAGTCTAATGTGT
GATAGTATGGTTTTTAGAGATGACTTACCACCATATATAAGGGTAGAATGTGCTAACAATTATGAAGATGGATTTGGTTA
TACAAGAAAAGAATTTGAGGAAATACTGAGGATTCTATATGAAAGAAGAGAGTCATCCTCTGGAATTGGAAGAGGGTTTA
TAATCGAAAAGCTTATACAGGAAGGTATTGAGATTTCTGAAAGCAAAGTTAGAAAGGTGCTATCTTATTTAAGTGAATGT
GGATACATATCATCTAAATCTGGTAGAGGAGGAAGTCAAATAACTTCAGAGGGGATAAAACTTTATAATAATATAAATTA
A

Upstream 100 bases:

>100_bases
ACTAGAAGAAGCTGATAAAAATTTATATAAAGCAAAACAACTTGGTAGAAATAAAGTAGTATATAAGTAATTATATACTA
TATAAATAAGAGGTATAAAT

Downstream 100 bases:

>100_bases
GCTAAGTATTTGATATTGAAATCACATATTTTGAATTTAGATATTTAAATAATAATAAACTTTTATATTTATAGAGATTA
ATTTATATTATGTCAGAAAG

Product: sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 666; Mature: 666

Protein sequence:

>666_residues
MKQSIAIVTDKITKLSSFLEENIRLVLGNYIDINHYYLEVLRENDKIQGDFVLVMNDDRLNSMRKHLVQDSKIIVIRRTL
KENEIYGLFSIPNGTEVLVVNDTKETTLETISLFYKIGVKNLKFTPYIEGKIYKNIDIAITPGVKGKVPSYINKVIDLGN
RYIDISTFIEIINGLRIDVKEIRKNLMAYSESLISLDNGVKDNYRQLFLKIEEQDVILNLSKDGIIFTSADGIINTFNKE
ALKILGINENPQGKNIEDIISEDLNILLEDKEIIDEVVFTNKKYINVNKKNIFSMGNKAGIYYNLQEITYIKKLEQNLTN
KLREQGQIARYTFKDIKTKNKNMVKCVELAKKISKSDLSVLIIGESGTGKELLSQSIHNASNRSNQPFIAVNCAAVPDSL
LESQLFGYEKGSFTGALREGKKGLFELANNGTIFLDEIGDMPPLLQTKLLRVLQEKQVMPIGSHNVINIDVRVIAATNKN
LLKMIREGKFREDLYYRLNVLPIDVPSLRNRKEDIITLMNFFLKNNIRLSPEVITILEKYNWPGNIRELQNVASYVSLMC
DSMVFRDDLPPYIRVECANNYEDGFGYTRKEFEEILRILYERRESSSGIGRGFIIEKLIQEGIEISESKVRKVLSYLSEC
GYISSKSGRGGSQITSEGIKLYNNIN

Sequences:

>Translated_666_residues
MKQSIAIVTDKITKLSSFLEENIRLVLGNYIDINHYYLEVLRENDKIQGDFVLVMNDDRLNSMRKHLVQDSKIIVIRRTL
KENEIYGLFSIPNGTEVLVVNDTKETTLETISLFYKIGVKNLKFTPYIEGKIYKNIDIAITPGVKGKVPSYINKVIDLGN
RYIDISTFIEIINGLRIDVKEIRKNLMAYSESLISLDNGVKDNYRQLFLKIEEQDVILNLSKDGIIFTSADGIINTFNKE
ALKILGINENPQGKNIEDIISEDLNILLEDKEIIDEVVFTNKKYINVNKKNIFSMGNKAGIYYNLQEITYIKKLEQNLTN
KLREQGQIARYTFKDIKTKNKNMVKCVELAKKISKSDLSVLIIGESGTGKELLSQSIHNASNRSNQPFIAVNCAAVPDSL
LESQLFGYEKGSFTGALREGKKGLFELANNGTIFLDEIGDMPPLLQTKLLRVLQEKQVMPIGSHNVINIDVRVIAATNKN
LLKMIREGKFREDLYYRLNVLPIDVPSLRNRKEDIITLMNFFLKNNIRLSPEVITILEKYNWPGNIRELQNVASYVSLMC
DSMVFRDDLPPYIRVECANNYEDGFGYTRKEFEEILRILYERRESSSGIGRGFIIEKLIQEGIEISESKVRKVLSYLSEC
GYISSKSGRGGSQITSEGIKLYNNIN
>Mature_666_residues
MKQSIAIVTDKITKLSSFLEENIRLVLGNYIDINHYYLEVLRENDKIQGDFVLVMNDDRLNSMRKHLVQDSKIIVIRRTL
KENEIYGLFSIPNGTEVLVVNDTKETTLETISLFYKIGVKNLKFTPYIEGKIYKNIDIAITPGVKGKVPSYINKVIDLGN
RYIDISTFIEIINGLRIDVKEIRKNLMAYSESLISLDNGVKDNYRQLFLKIEEQDVILNLSKDGIIFTSADGIINTFNKE
ALKILGINENPQGKNIEDIISEDLNILLEDKEIIDEVVFTNKKYINVNKKNIFSMGNKAGIYYNLQEITYIKKLEQNLTN
KLREQGQIARYTFKDIKTKNKNMVKCVELAKKISKSDLSVLIIGESGTGKELLSQSIHNASNRSNQPFIAVNCAAVPDSL
LESQLFGYEKGSFTGALREGKKGLFELANNGTIFLDEIGDMPPLLQTKLLRVLQEKQVMPIGSHNVINIDVRVIAATNKN
LLKMIREGKFREDLYYRLNVLPIDVPSLRNRKEDIITLMNFFLKNNIRLSPEVITILEKYNWPGNIRELQNVASYVSLMC
DSMVFRDDLPPYIRVECANNYEDGFGYTRKEFEEILRILYERRESSSGIGRGFIIEKLIQEGIEISESKVRKVLSYLSEC
GYISSKSGRGGSQITSEGIKLYNNIN

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=390, Percent_Identity=38.7179487179487, Blast_Score=265, Evalue=1e-71,
Organism=Escherichia coli, GI1788550, Length=294, Percent_Identity=46.5986394557823, Blast_Score=262, Evalue=4e-71,
Organism=Escherichia coli, GI1788905, Length=307, Percent_Identity=42.0195439739414, Blast_Score=245, Evalue=7e-66,
Organism=Escherichia coli, GI1790299, Length=247, Percent_Identity=46.5587044534413, Blast_Score=231, Evalue=1e-61,
Organism=Escherichia coli, GI1790437, Length=227, Percent_Identity=48.0176211453744, Blast_Score=229, Evalue=3e-61,
Organism=Escherichia coli, GI87082117, Length=262, Percent_Identity=43.1297709923664, Blast_Score=228, Evalue=1e-60,
Organism=Escherichia coli, GI1789087, Length=275, Percent_Identity=45.8181818181818, Blast_Score=228, Evalue=1e-60,
Organism=Escherichia coli, GI1786524, Length=266, Percent_Identity=42.8571428571429, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI87082152, Length=208, Percent_Identity=46.6346153846154, Blast_Score=207, Evalue=3e-54,
Organism=Escherichia coli, GI1787583, Length=229, Percent_Identity=41.4847161572052, Blast_Score=202, Evalue=5e-53,
Organism=Escherichia coli, GI87081872, Length=220, Percent_Identity=40.4545454545455, Blast_Score=173, Evalue=3e-44,
Organism=Escherichia coli, GI87081858, Length=447, Percent_Identity=26.1744966442953, Blast_Score=149, Evalue=5e-37,
Organism=Escherichia coli, GI1789828, Length=244, Percent_Identity=33.6065573770492, Blast_Score=145, Evalue=1e-35,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 76031; Mature: 76031

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQSIAIVTDKITKLSSFLEENIRLVLGNYIDINHYYLEVLRENDKIQGDFVLVMNDDRL
CCCCEEHHHHHHHHHHHHHHHCCEEEECCEEECHHHHHHHHHCCCCCCCCEEEEECCCHH
NSMRKHLVQDSKIIVIRRTLKENEIYGLFSIPNGTEVLVVNDTKETTLETISLFYKIGVK
HHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCC
NLKFTPYIEGKIYKNIDIAITPGVKGKVPSYINKVIDLGNRYIDISTFIEIINGLRIDVK
CEEECEEECCEEEECEEEEECCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHCCCCEEHH
EIRKNLMAYSESLISLDNGVKDNYRQLFLKIEEQDVILNLSKDGIIFTSADGIINTFNKE
HHHHHHHHHHHHHHHHCCCCCHHHHHEEEEEECCCEEEEECCCCEEEEECCCHHHHCCCC
ALKILGINENPQGKNIEDIISEDLNILLEDKEIIDEVVFTNKKYINVNKKNIFSMGNKAG
EEEEEECCCCCCCCCHHHHHHHHHHEEECCHHHHHHHHHCCCEEEECCHHHHHHCCCCCC
IYYNLQEITYIKKLEQNLTNKLREQGQIARYTFKDIKTKNKNMVKCVELAKKISKSDLSV
EEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCEE
LIIGESGTGKELLSQSIHNASNRSNQPFIAVNCAAVPDSLLESQLFGYEKGSFTGALREG
EEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHC
KKGLFELANNGTIFLDEIGDMPPLLQTKLLRVLQEKQVMPIGSHNVINIDVRVIAATNKN
CHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCHH
LLKMIREGKFREDLYYRLNVLPIDVPSLRNRKEDIITLMNFFLKNNIRLSPEVITILEKY
HHHHHHCCCCCCCCEEEEEEEEECCCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
NWPGNIRELQNVASYVSLMCDSMVFRDDLPPYIRVECANNYEDGFGYTRKEFEEILRILY
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH
ERRESSSGIGRGFIIEKLIQEGIEISESKVRKVLSYLSECGYISSKSGRGGSQITSEGIK
HHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
LYNNIN
HHCCCC
>Mature Secondary Structure
MKQSIAIVTDKITKLSSFLEENIRLVLGNYIDINHYYLEVLRENDKIQGDFVLVMNDDRL
CCCCEEHHHHHHHHHHHHHHHCCEEEECCEEECHHHHHHHHHCCCCCCCCEEEEECCCHH
NSMRKHLVQDSKIIVIRRTLKENEIYGLFSIPNGTEVLVVNDTKETTLETISLFYKIGVK
HHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCC
NLKFTPYIEGKIYKNIDIAITPGVKGKVPSYINKVIDLGNRYIDISTFIEIINGLRIDVK
CEEECEEECCEEEECEEEEECCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHCCCCEEHH
EIRKNLMAYSESLISLDNGVKDNYRQLFLKIEEQDVILNLSKDGIIFTSADGIINTFNKE
HHHHHHHHHHHHHHHHCCCCCHHHHHEEEEEECCCEEEEECCCCEEEEECCCHHHHCCCC
ALKILGINENPQGKNIEDIISEDLNILLEDKEIIDEVVFTNKKYINVNKKNIFSMGNKAG
EEEEEECCCCCCCCCHHHHHHHHHHEEECCHHHHHHHHHCCCEEEECCHHHHHHCCCCCC
IYYNLQEITYIKKLEQNLTNKLREQGQIARYTFKDIKTKNKNMVKCVELAKKISKSDLSV
EEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCEE
LIIGESGTGKELLSQSIHNASNRSNQPFIAVNCAAVPDSLLESQLFGYEKGSFTGALREG
EEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHC
KKGLFELANNGTIFLDEIGDMPPLLQTKLLRVLQEKQVMPIGSHNVINIDVRVIAATNKN
CHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCHH
LLKMIREGKFREDLYYRLNVLPIDVPSLRNRKEDIITLMNFFLKNNIRLSPEVITILEKY
HHHHHHCCCCCCCCEEEEEEEEECCCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
NWPGNIRELQNVASYVSLMCDSMVFRDDLPPYIRVECANNYEDGFGYTRKEFEEILRILY
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH
ERRESSSGIGRGFIIEKLIQEGIEISESKVRKVLSYLSECGYISSKSGRGGSQITSEGIK
HHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
LYNNIN
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA