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The map label for this gene is rnfB [H]

Identifier: 126698736

GI number: 126698736

Start: 1340568

End: 1341545

Strand: Direct

Name: rnfB [H]

Synonym: CD1142

Alternate gene names: 126698736

Gene position: 1340568-1341545 (Clockwise)

Preceding gene: 126698735

Following gene: 126698737

Centisome position: 31.25

GC content: 35.07

Gene sequence:

>978_bases
GTGAAAATGGTGATACTTACAGCTGTATTAGTTTTAGGAATTATGGGCTTAATCTTCGGGATAGTACTAGATTTTGCATC
TAAAAAGTTTGCTGTAGAAGTAGACGAGAGAGTGGAAGCTATACTAGGAGTACTTCCAGGAGCCAACTGTGGAGGTTGTG
GATTTCCAGGTTGTGGAGGTCTTGCAAATGCGATAGTTGAAGGCAATGCACCAGTTAATGGTTGCCCTGTAGGTGGAGCA
GATGTTGGTGCAAAAGTTGGAGAAATAATGGGAATAAGTGCTGAAGCAGGTGAGAAACAAGTAGCAAAAGTTATTTGTAA
AGGAACTTGTTCAAGTGCAAAAGATAAATATGAGTATGAAGGAATATCAGATTGTAGAGCAGCAAATGTTTTAAACTCAG
GTGCTAAGATGTGTAAATTTGGATGTTTAGGTCTTGGAACATGTAAAGATGCTTGTAAATTTGATGCTATTTCTATAGTT
GATGGAATAGCAGTAATAGATGAAGAAAAGTGTGTAAATTGTGGAAAATGTAAAGAAGTTTGTCCTAAGGGTATAATAAT
CACAAAACCAGAAAGTCAAGAAGTAGTTGTAGAGTGTAATAGCAAAGAGTTTGGTAAAGCTGTTAAGGAAAAATGTACTG
CTGGATGTATTGGCTGTGGAATGTGTGTAAAAGCTTGTAAATTTGATGCAATAATATTTGAAGACAAAATAGCTAAGATA
GACCCTAATAAGTGTGTAGGTTGTATGCAATGTGTAGCAAAATGCCCTACAAAAGTAATATCAGGTGACATAACTAAGAA
AAAGAAAGTTACTATTGACCAAGAACTTTGTGTTGGATGTACAGTGTGCAAAAAACAATGTAAGTTTGATGCAATAGAGG
GAGAATTAAAAGAAAAACATAAGGTAGATGCAGATAAATGTGTAGGATGCCATTTATGTATGGAAAAATGTCCAAAGAAA
GCTATTAAAATTTTGTAA

Upstream 100 bases:

>100_bases
AGAAGCATTTAAAGGTTTCCCTATAACGCTTATATCAGCAGGTTTAATGTCAATAGCTTTCTTAGGATTTACAGGACTTA
TAAAGCTATAAAAAAGAGGG

Downstream 100 bases:

>100_bases
TATGGACAAAATAAGGATATGGAATAATTTCCATATCTCTAATGAGTACATAAAACAGAGGTATGGAATAATTTCCATAC
CTCTATTTTATGTATATTTA

Product: electron transport complex protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKMVILTAVLVLGIMGLIFGIVLDFASKKFAVEVDERVEAILGVLPGANCGGCGFPGCGGLANAIVEGNAPVNGCPVGGA
DVGAKVGEIMGISAEAGEKQVAKVICKGTCSSAKDKYEYEGISDCRAANVLNSGAKMCKFGCLGLGTCKDACKFDAISIV
DGIAVIDEEKCVNCGKCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKACKFDAIIFEDKIAKI
DPNKCVGCMQCVAKCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELKEKHKVDADKCVGCHLCMEKCPKK
AIKIL

Sequences:

>Translated_325_residues
MKMVILTAVLVLGIMGLIFGIVLDFASKKFAVEVDERVEAILGVLPGANCGGCGFPGCGGLANAIVEGNAPVNGCPVGGA
DVGAKVGEIMGISAEAGEKQVAKVICKGTCSSAKDKYEYEGISDCRAANVLNSGAKMCKFGCLGLGTCKDACKFDAISIV
DGIAVIDEEKCVNCGKCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKACKFDAIIFEDKIAKI
DPNKCVGCMQCVAKCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELKEKHKVDADKCVGCHLCMEKCPKK
AIKIL
>Mature_325_residues
MKMVILTAVLVLGIMGLIFGIVLDFASKKFAVEVDERVEAILGVLPGANCGGCGFPGCGGLANAIVEGNAPVNGCPVGGA
DVGAKVGEIMGISAEAGEKQVAKVICKGTCSSAKDKYEYEGISDCRAANVLNSGAKMCKFGCLGLGTCKDACKFDAISIV
DGIAVIDEEKCVNCGKCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKACKFDAIIFEDKIAKI
DPNKCVGCMQCVAKCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELKEKHKVDADKCVGCHLCMEKCPKK
AIKIL

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=190, Percent_Identity=29.4736842105263, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 34054; Mature: 34054

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

10.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
12.6 %Cys+Met (Translated Protein)
10.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
12.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMVILTAVLVLGIMGLIFGIVLDFASKKFAVEVDERVEAILGVLPGANCGGCGFPGCGG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCH
LANAIVEGNAPVNGCPVGGADVGAKVGEIMGISAEAGEKQVAKVICKGTCSSAKDKYEYE
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
GISDCRAANVLNSGAKMCKFGCLGLGTCKDACKFDAISIVDGIAVIDEEKCVNCGKCKEV
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHEECHHHCCCCCCHHHH
CPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKACKFDAIIFEDKIAKI
CCCCEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC
DPNKCVGCMQCVAKCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELKEKH
CCHHHHHHHHHHHHCCHHHHCCCCCCCCCCEECHHHHHHHHHHHHHCCCCHHHHHHHHHH
KVDADKCVGCHLCMEKCPKKAIKIL
CCCHHHHHHHHHHHHHCCHHHHHCC
>Mature Secondary Structure
MKMVILTAVLVLGIMGLIFGIVLDFASKKFAVEVDERVEAILGVLPGANCGGCGFPGCGG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCH
LANAIVEGNAPVNGCPVGGADVGAKVGEIMGISAEAGEKQVAKVICKGTCSSAKDKYEYE
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
GISDCRAANVLNSGAKMCKFGCLGLGTCKDACKFDAISIVDGIAVIDEEKCVNCGKCKEV
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHEECHHHCCCCCCHHHH
CPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKACKFDAIIFEDKIAKI
CCCCEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC
DPNKCVGCMQCVAKCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELKEKH
CCHHHHHHHHHHHHCCHHHHCCCCCCCCCCEECHHHHHHHHHHHHHCCCCHHHHHHHHHH
KVDADKCVGCHLCMEKCPKKAIKIL
CCCHHHHHHHHHHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]