| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698528
Identifier: 126698528
GI number: 126698528
Start: 1117990
End: 1118553
Strand: Direct
Name: 126698528
Synonym: CD0947
Alternate gene names: NA
Gene position: 1117990-1118553 (Clockwise)
Preceding gene: 126698527
Following gene: 126698529
Centisome position: 26.06
GC content: 28.01
Gene sequence:
>564_bases ATGGATTGGTTAAAAGAATTGCTAGAAGGAATAAAAATAGAAAATAACAAAATTGATGTAGTTTCTCTTCAAAAATCTAT AGAAAAGAAAATAAAAGAGACTACAATTACTCAAGAAGATTATACAAATCTTGAAACACAACTTAATACAGCTAATGAAG CTATTAAAAAGTTTGAAGGAGGTATGACAAAAGAAGATGTAGAGAATCTAAAAACAACTTATGAAACTGATAAGAAAACT TTGGAAGAAACCTACAAAAAAGAAATTGAAGAAAAGGACTTTAATTACTGGTTAAATGATGCTTTTAAGTCTATTAAATG TAGGGATGAAATAGCGTTAAAAGCTCATTTAGATATAGAAGCACTAAGAAATAGTAAAGATAGACAAAAAGCTTTTGAAG AGCAAATAAACCCTTTGAAACAGGATAAAGATTATTTGTTTAATGCAACACTAGAAGGTGAAGAGCCTAAAATAGATACT ATAACACCAGGGCAAGAGCCTAAGATAAATGATTTTGGTTTTAATTTTACTGGGGTAAGACCTCATGAAAATAATAATAA ATAG
Upstream 100 bases:
>100_bases AAATTCTAAAGAAAGTAGGAGAAGAATTAAATAAATCACTAGACAAAAGTCTTTAAAGACTTTTTTTATTGTGTAAAAAA TGAAAGGAGATATTTAAAAG
Downstream 100 bases:
>100_bases GAGGAAATAAAATGGCAGCACTAAATTATGCAAAAGAATATTCAAATGTTTTAGCACAAGCATATCCTTATACTTTAAAC TTCGGGGATTTGTATGCAAC
Product: phage scaffold protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 187; Mature: 187
Protein sequence:
>187_residues MDWLKELLEGIKIENNKIDVVSLQKSIEKKIKETTITQEDYTNLETQLNTANEAIKKFEGGMTKEDVENLKTTYETDKKT LEETYKKEIEEKDFNYWLNDAFKSIKCRDEIALKAHLDIEALRNSKDRQKAFEEQINPLKQDKDYLFNATLEGEEPKIDT ITPGQEPKINDFGFNFTGVRPHENNNK
Sequences:
>Translated_187_residues MDWLKELLEGIKIENNKIDVVSLQKSIEKKIKETTITQEDYTNLETQLNTANEAIKKFEGGMTKEDVENLKTTYETDKKT LEETYKKEIEEKDFNYWLNDAFKSIKCRDEIALKAHLDIEALRNSKDRQKAFEEQINPLKQDKDYLFNATLEGEEPKIDT ITPGQEPKINDFGFNFTGVRPHENNNK >Mature_187_residues MDWLKELLEGIKIENNKIDVVSLQKSIEKKIKETTITQEDYTNLETQLNTANEAIKKFEGGMTKEDVENLKTTYETDKKT LEETYKKEIEEKDFNYWLNDAFKSIKCRDEIALKAHLDIEALRNSKDRQKAFEEQINPLKQDKDYLFNATLEGEEPKIDT ITPGQEPKINDFGFNFTGVRPHENNNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21883; Mature: 21883
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDWLKELLEGIKIENNKIDVVSLQKSIEKKIKETTITQEDYTNLETQLNTANEAIKKFEG CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC GMTKEDVENLKTTYETDKKTLEETYKKEIEEKDFNYWLNDAFKSIKCRDEIALKAHLDIE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH ALRNSKDRQKAFEEQINPLKQDKDYLFNATLEGEEPKIDTITPGQEPKINDFGFNFTGVR HHHCCHHHHHHHHHHHCHHHCCCHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC PHENNNK CCCCCCC >Mature Secondary Structure MDWLKELLEGIKIENNKIDVVSLQKSIEKKIKETTITQEDYTNLETQLNTANEAIKKFEG CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC GMTKEDVENLKTTYETDKKTLEETYKKEIEEKDFNYWLNDAFKSIKCRDEIALKAHLDIE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH ALRNSKDRQKAFEEQINPLKQDKDYLFNATLEGEEPKIDTITPGQEPKINDFGFNFTGVR HHHCCHHHHHHHHHHHCHHHCCCHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC PHENNNK CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA