| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is mutS2
Identifier: 126698288
GI number: 126698288
Start: 865181
End: 867559
Strand: Direct
Name: mutS2
Synonym: CD0709
Alternate gene names: 126698288
Gene position: 865181-867559 (Clockwise)
Preceding gene: 126698286
Following gene: 126698289
Centisome position: 20.17
GC content: 32.28
Gene sequence:
>2379_bases ATGAATGAGAAATCGTTAAGAGTTCTAGAATACAATAAAATAATAGATTTGTTAAAGAAGAAAGCCTCATCTTCTTTAGG TCTAAAATATATAGAAAATTTAGTACCAAATACTGATTTTGTAGAAGTGAAATCTATGCTAGAAGAAACTAGTGAAGCTC AATCAATTATTATAAAGAGAGGTTCAGTAGGGTTGGAAGGTATTCATGATATAGAAGATAAGGTAAAGAGAGCTTATATA GGTGCTTCTCTTGACCCAGGAAGTCTGATTATGATAGCAGATACCTTAAGAGTGGCTAGAAGATTAAGAAATAGCTTATC TAGTAGTGATGAAGAAGATTTTAATTATCCAATAATACAATCTCTATCAAATTCTCTATATGTATACAAGGACATAGAAG ACCAGATATACAATGCTATAATTAGTGAAGTAGAAATATCTGACAATGCTTCAAGTATACTTAGAGATATCAGAAGAAGA ATAGCCCAAAAAAATCAATCCATTAGGTCAAAATTAAATTCAATAATAAGTTCAACTACTTATCAAAAGTACTTACAAGA TGCAATAATTTCTCTAAGAGGTGATAGATTTGTAGTACCTGTAAAATCTGAATATAGGTCGCAAGTAGCTGGTATAGTGC ATGACCAGTCATCTTCTGGTGCGACACTTTTTATAGAGCCAATGACTATAGTAGAGATGAACAATGAATTGAGGCAGTTG AAACTAGGAGAGCAAGAGGAAATAGAAAGAATTTTATCAGAGCTTTCTGCTATGGTTGGAGAAGTGAGCGAAGATTTAAT CTCTAATCAAGAGATACTTGGAAGATTGGACTTTGCATTTTCAAAGGGAAAACTTTCTATACAGATGAGAGGAATAGAAC CAACTTTAAATGAGGATAAATATTTAAACATAAAAAATGGAAGACATCCACTGCTGGATAAAAAGAAGGTAGTAGCAAAT ACAATTTATTTAGGAAGAGATTTCCATACATTGGTGATAACAGGTCCAAACACAGGTGGTAAGACTGTTACAATAAAAAC TGTAGGTCTATTTGCACTTATGACACAAAGTGGACTTCATATACCTGCTGATTATGGAAGTAGTATGTGTGTATATGATA ATGTATTTGCAGATATAGGAGATGAACAGAGTATTGAACAGAGTCTATCAACATTTTCATCTCATATGACGAATATAGTA TCTATATTACAAAACGTAACAGCAGACTCTTTAGTTATATTTGACGAGTTAGGAGCGGGAACAGACCCTGTTGAAGGAGC TGCCCTTGCAATAGCAGTATTAGAAGATATAAATTCTGTAGGAGCTAAATGTATAGCTACCACTCACTATAGTGAGCTTA AAAATTATGCTCTTACTAAATCAGGTGTAGAAAATGCAGCAGTTGAATTTGATATAGAAACTTTAAGCCCAACATATAAG TTACTTATAGGTGTTCCCGGAAAATCAAATGCGTTTGAGATTTCTAGAAAACTTGGGCTAAGTGATTATGTGATTTCACG TGCTAAAGAATATATAAATACAGAAAACATAGCTTTAGAAGATGTGTTACAGAATGTTGAAAAGAATAGAATCAAAGCAG TAGAAGATAGAGAAGAAGCTGAAAGATTAAAAGAAGAGATTGAAAAACTGAAAGTAGAGTATGACGAAAAACTTGAAAAA TTGGTCAGTCAAAGAGATAAGATGATTGAAAAAGCTAAATCAGAAGCATTTTCAATTATAAGACAAGCTAAAGAAGAAGT AGATATTATAATAAAAGAACTTAGAAGTCTTGAACAAGAAAGAGCTTCAAAAGAAAAGAATCGTAAGATAGAAGAACTTA GAAAAGAATTGACCAGCTCTATGGGAAGTCTTCAGCCAACAGTAAAAAGTATGATAGTTCCAAAGGTATCAAATAAGGAG ATAAAAGACTTAAAGCCAGGTGAAGAAGTTAAGGTAATAACTTTAAATCAAAATGGTAGTGTAGTTTCAGTAGATAAAAA GAGAAAAGAAGCAGTAGTGCAAATTGGTATAATGAAGATGACTCTACCTTTTAAATCTTTACAAAAAACACGCAAAGATG TTTCAACAAATGTAACTAAATCAACGAGAAACATTATAAGGTCAAAATCTGGTAGTGTAAAAAATGAAGTTGACCTTAGA GGGTTAAACCTAGAAGAAGCTATAATGGAAGTAGAAAAGTATCTTGATGATGCATATGTGGCAGGTTTAGAGTCTGTAAC AGTAATACATGGAATAGGTACAGGAGTATTAAAAGCAGGGCTACAAGACATTTTAAGAAGAAATAGACATGTAAAATCAC AAAGAGGTGGTCAATATGGAGAAGGTGGAGCAGGAGTAACAATTGTTAAATTAAAATAA
Upstream 100 bases:
>100_bases AAAGAAATAAAACTTGCAGTTTTTATTGGAAATGCTTGAAAACATACATTTTTAAAATTAAATAAAAAAGTTAAAATATC GAGGATGGTGAATATAGAAA
Downstream 100 bases:
>100_bases TTTGTATAAGAATACATTAGTAATTTGTATGAGAATATATTAAGAATTTGTATAGGAGCACATTTTTATGATATTGGTAT CTGCATGTTTAATAGGAATA
Product: DNA mismatch repair protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 792; Mature: 792
Protein sequence:
>792_residues MNEKSLRVLEYNKIIDLLKKKASSSLGLKYIENLVPNTDFVEVKSMLEETSEAQSIIIKRGSVGLEGIHDIEDKVKRAYI GASLDPGSLIMIADTLRVARRLRNSLSSSDEEDFNYPIIQSLSNSLYVYKDIEDQIYNAIISEVEISDNASSILRDIRRR IAQKNQSIRSKLNSIISSTTYQKYLQDAIISLRGDRFVVPVKSEYRSQVAGIVHDQSSSGATLFIEPMTIVEMNNELRQL KLGEQEEIERILSELSAMVGEVSEDLISNQEILGRLDFAFSKGKLSIQMRGIEPTLNEDKYLNIKNGRHPLLDKKKVVAN TIYLGRDFHTLVITGPNTGGKTVTIKTVGLFALMTQSGLHIPADYGSSMCVYDNVFADIGDEQSIEQSLSTFSSHMTNIV SILQNVTADSLVIFDELGAGTDPVEGAALAIAVLEDINSVGAKCIATTHYSELKNYALTKSGVENAAVEFDIETLSPTYK LLIGVPGKSNAFEISRKLGLSDYVISRAKEYINTENIALEDVLQNVEKNRIKAVEDREEAERLKEEIEKLKVEYDEKLEK LVSQRDKMIEKAKSEAFSIIRQAKEEVDIIIKELRSLEQERASKEKNRKIEELRKELTSSMGSLQPTVKSMIVPKVSNKE IKDLKPGEEVKVITLNQNGSVVSVDKKRKEAVVQIGIMKMTLPFKSLQKTRKDVSTNVTKSTRNIIRSKSGSVKNEVDLR GLNLEEAIMEVEKYLDDAYVAGLESVTVIHGIGTGVLKAGLQDILRRNRHVKSQRGGQYGEGGAGVTIVKLK
Sequences:
>Translated_792_residues MNEKSLRVLEYNKIIDLLKKKASSSLGLKYIENLVPNTDFVEVKSMLEETSEAQSIIIKRGSVGLEGIHDIEDKVKRAYI GASLDPGSLIMIADTLRVARRLRNSLSSSDEEDFNYPIIQSLSNSLYVYKDIEDQIYNAIISEVEISDNASSILRDIRRR IAQKNQSIRSKLNSIISSTTYQKYLQDAIISLRGDRFVVPVKSEYRSQVAGIVHDQSSSGATLFIEPMTIVEMNNELRQL KLGEQEEIERILSELSAMVGEVSEDLISNQEILGRLDFAFSKGKLSIQMRGIEPTLNEDKYLNIKNGRHPLLDKKKVVAN TIYLGRDFHTLVITGPNTGGKTVTIKTVGLFALMTQSGLHIPADYGSSMCVYDNVFADIGDEQSIEQSLSTFSSHMTNIV SILQNVTADSLVIFDELGAGTDPVEGAALAIAVLEDINSVGAKCIATTHYSELKNYALTKSGVENAAVEFDIETLSPTYK LLIGVPGKSNAFEISRKLGLSDYVISRAKEYINTENIALEDVLQNVEKNRIKAVEDREEAERLKEEIEKLKVEYDEKLEK LVSQRDKMIEKAKSEAFSIIRQAKEEVDIIIKELRSLEQERASKEKNRKIEELRKELTSSMGSLQPTVKSMIVPKVSNKE IKDLKPGEEVKVITLNQNGSVVSVDKKRKEAVVQIGIMKMTLPFKSLQKTRKDVSTNVTKSTRNIIRSKSGSVKNEVDLR GLNLEEAIMEVEKYLDDAYVAGLESVTVIHGIGTGVLKAGLQDILRRNRHVKSQRGGQYGEGGAGVTIVKLK >Mature_792_residues MNEKSLRVLEYNKIIDLLKKKASSSLGLKYIENLVPNTDFVEVKSMLEETSEAQSIIIKRGSVGLEGIHDIEDKVKRAYI GASLDPGSLIMIADTLRVARRLRNSLSSSDEEDFNYPIIQSLSNSLYVYKDIEDQIYNAIISEVEISDNASSILRDIRRR IAQKNQSIRSKLNSIISSTTYQKYLQDAIISLRGDRFVVPVKSEYRSQVAGIVHDQSSSGATLFIEPMTIVEMNNELRQL KLGEQEEIERILSELSAMVGEVSEDLISNQEILGRLDFAFSKGKLSIQMRGIEPTLNEDKYLNIKNGRHPLLDKKKVVAN TIYLGRDFHTLVITGPNTGGKTVTIKTVGLFALMTQSGLHIPADYGSSMCVYDNVFADIGDEQSIEQSLSTFSSHMTNIV SILQNVTADSLVIFDELGAGTDPVEGAALAIAVLEDINSVGAKCIATTHYSELKNYALTKSGVENAAVEFDIETLSPTYK LLIGVPGKSNAFEISRKLGLSDYVISRAKEYINTENIALEDVLQNVEKNRIKAVEDREEAERLKEEIEKLKVEYDEKLEK LVSQRDKMIEKAKSEAFSIIRQAKEEVDIIIKELRSLEQERASKEKNRKIEELRKELTSSMGSLQPTVKSMIVPKVSNKE IKDLKPGEEVKVITLNQNGSVVSVDKKRKEAVVQIGIMKMTLPFKSLQKTRKDVSTNVTKSTRNIIRSKSGSVKNEVDLR GLNLEEAIMEVEKYLDDAYVAGLESVTVIHGIGTGVLKAGLQDILRRNRHVKSQRGGQYGEGGAGVTIVKLK
Specific function: This Protein Is Involved In The Repair Of Mismatches In DNA. It Is Possible That It Carries Out The Mismatch Recognition Step. This Protein Has A Weak Atpase Activity. [C]
COG id: COG1193
COG function: function code L; Mismatch repair ATPase (MutS family)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Smr domain
Homologues:
Organism=Homo sapiens, GI284813531, Length=290, Percent_Identity=32.4137931034483, Blast_Score=122, Evalue=1e-27, Organism=Homo sapiens, GI36949366, Length=409, Percent_Identity=26.8948655256724, Blast_Score=121, Evalue=2e-27, Organism=Homo sapiens, GI26638666, Length=331, Percent_Identity=30.5135951661631, Blast_Score=110, Evalue=5e-24, Organism=Homo sapiens, GI4505253, Length=331, Percent_Identity=30.5135951661631, Blast_Score=110, Evalue=5e-24, Organism=Homo sapiens, GI4504191, Length=237, Percent_Identity=31.6455696202532, Blast_Score=110, Evalue=8e-24, Organism=Homo sapiens, GI4557761, Length=216, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI26638664, Length=332, Percent_Identity=30.7228915662651, Blast_Score=106, Evalue=1e-22, Organism=Homo sapiens, GI262231786, Length=210, Percent_Identity=34.2857142857143, Blast_Score=96, Evalue=1e-19, Organism=Escherichia coli, GI1789089, Length=366, Percent_Identity=27.0491803278689, Blast_Score=112, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17508445, Length=330, Percent_Identity=26.0606060606061, Blast_Score=110, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17534743, Length=304, Percent_Identity=28.2894736842105, Blast_Score=110, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17508447, Length=275, Percent_Identity=26.5454545454545, Blast_Score=86, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17539736, Length=252, Percent_Identity=26.984126984127, Blast_Score=83, Evalue=7e-16, Organism=Saccharomyces cerevisiae, GI6324482, Length=312, Percent_Identity=29.4871794871795, Blast_Score=102, Evalue=3e-22, Organism=Saccharomyces cerevisiae, GI6319935, Length=406, Percent_Identity=25.615763546798, Blast_Score=95, Evalue=3e-20, Organism=Saccharomyces cerevisiae, GI6321109, Length=167, Percent_Identity=34.1317365269461, Blast_Score=91, Evalue=7e-19, Organism=Saccharomyces cerevisiae, GI6321912, Length=319, Percent_Identity=24.7648902821317, Blast_Score=89, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6320302, Length=223, Percent_Identity=26.9058295964126, Blast_Score=74, Evalue=9e-14, Organism=Saccharomyces cerevisiae, GI6320047, Length=257, Percent_Identity=26.8482490272374, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24584320, Length=352, Percent_Identity=28.125, Blast_Score=114, Evalue=2e-25, Organism=Drosophila melanogaster, GI24664545, Length=272, Percent_Identity=30.1470588235294, Blast_Score=106, Evalue=6e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MUTS2_CLOD6 (Q189Q3)
Other databases:
- EMBL: AM180355 - RefSeq: YP_001087185.1 - ProteinModelPortal: Q189Q3 - STRING: Q189Q3 - GeneID: 4916817 - GenomeReviews: AM180355_GR - KEGG: cdf:CD0709 - NMPDR: fig|1496.1.peg.1942 - eggNOG: COG1193 - HOGENOM: HBG486560 - OMA: PGLVHDQ - ProtClustDB: CLSK965039 - HAMAP: MF_00092 - InterPro: IPR005747 - InterPro: IPR000432 - InterPro: IPR007696 - InterPro: IPR002625 - PANTHER: PTHR11361 - PIRSF: PIRSF005814 - SMART: SM00534 - SMART: SM00533 - TIGRFAMs: TIGR01069
Pfam domain/function: PF00488 MutS_V; PF01713 Smr; SSF48334 DNA_repair_MutS_domIII
EC number: NA
Molecular weight: Translated: 88205; Mature: 88205
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: PS00486 DNA_MISMATCH_REPAIR_2; PS50828 SMR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEKSLRVLEYNKIIDLLKKKASSSLGLKYIENLVPNTDFVEVKSMLEETSEAQSIIIKR CCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEC GSVGLEGIHDIEDKVKRAYIGASLDPGSLIMIADTLRVARRLRNSLSSSDEEDFNYPIIQ CCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHH SLSNSLYVYKDIEDQIYNAIISEVEISDNASSILRDIRRRIAQKNQSIRSKLNSIISSTT HCCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YQKYLQDAIISLRGDRFVVPVKSEYRSQVAGIVHDQSSSGATLFIEPMTIVEMNNELRQL HHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCHHHHHH KLGEQEEIERILSELSAMVGEVSEDLISNQEILGRLDFAFSKGKLSIQMRGIEPTLNEDK CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEECCCEEEEEEECCCCCCCCCC YLNIKNGRHPLLDKKKVVANTIYLGRDFHTLVITGPNTGGKTVTIKTVGLFALMTQSGLH EEEECCCCCCCCCCHHHHHHHEEECCCEEEEEEECCCCCCCEEEEEHHHHHHHHHHCCCC IPADYGSSMCVYDNVFADIGDEQSIEQSLSTFSSHMTNIVSILQNVTADSLVIFDELGAG CCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC TDPVEGAALAIAVLEDINSVGAKCIATTHYSELKNYALTKSGVENAAVEFDIETLSPTYK CCCCCHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCEE LLIGVPGKSNAFEISRKLGLSDYVISRAKEYINTENIALEDVLQNVEKNRIKAVEDREEA EEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH ERLKEEIEKLKVEYDEKLEKLVSQRDKMIEKAKSEAFSIIRQAKEEVDIIIKELRSLEQE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RASKEKNRKIEELRKELTSSMGSLQPTVKSMIVPKVSNKEIKDLKPGEEVKVITLNQNGS HHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCC VVSVDKKRKEAVVQIGIMKMTLPFKSLQKTRKDVSTNVTKSTRNIIRSKSGSVKNEVDLR EEEECHHHHHHHHHHHHHHEECCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCC GLNLEEAIMEVEKYLDDAYVAGLESVTVIHGIGTGVLKAGLQDILRRNRHVKSQRGGQYG CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC EGGAGVTIVKLK CCCCCEEEEEEC >Mature Secondary Structure MNEKSLRVLEYNKIIDLLKKKASSSLGLKYIENLVPNTDFVEVKSMLEETSEAQSIIIKR CCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEC GSVGLEGIHDIEDKVKRAYIGASLDPGSLIMIADTLRVARRLRNSLSSSDEEDFNYPIIQ CCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHH SLSNSLYVYKDIEDQIYNAIISEVEISDNASSILRDIRRRIAQKNQSIRSKLNSIISSTT HCCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YQKYLQDAIISLRGDRFVVPVKSEYRSQVAGIVHDQSSSGATLFIEPMTIVEMNNELRQL HHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCHHHHHH KLGEQEEIERILSELSAMVGEVSEDLISNQEILGRLDFAFSKGKLSIQMRGIEPTLNEDK CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEECCCEEEEEEECCCCCCCCCC YLNIKNGRHPLLDKKKVVANTIYLGRDFHTLVITGPNTGGKTVTIKTVGLFALMTQSGLH EEEECCCCCCCCCCHHHHHHHEEECCCEEEEEEECCCCCCCEEEEEHHHHHHHHHHCCCC IPADYGSSMCVYDNVFADIGDEQSIEQSLSTFSSHMTNIVSILQNVTADSLVIFDELGAG CCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC TDPVEGAALAIAVLEDINSVGAKCIATTHYSELKNYALTKSGVENAAVEFDIETLSPTYK CCCCCHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCEE LLIGVPGKSNAFEISRKLGLSDYVISRAKEYINTENIALEDVLQNVEKNRIKAVEDREEA EEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH ERLKEEIEKLKVEYDEKLEKLVSQRDKMIEKAKSEAFSIIRQAKEEVDIIIKELRSLEQE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RASKEKNRKIEELRKELTSSMGSLQPTVKSMIVPKVSNKEIKDLKPGEEVKVITLNQNGS HHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCC VVSVDKKRKEAVVQIGIMKMTLPFKSLQKTRKDVSTNVTKSTRNIIRSKSGSVKNEVDLR EEEECHHHHHHHHHHHHHHEECCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCC GLNLEEAIMEVEKYLDDAYVAGLESVTVIHGIGTGVLKAGLQDILRRNRHVKSQRGGQYG CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC EGGAGVTIVKLK CCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA