| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is pheT [H]
Identifier: 126698279
GI number: 126698279
Start: 850747
End: 853140
Strand: Direct
Name: pheT [H]
Synonym: CD0700
Alternate gene names: 126698279
Gene position: 850747-853140 (Clockwise)
Preceding gene: 126698278
Following gene: 126698280
Centisome position: 19.83
GC content: 30.95
Gene sequence:
>2394_bases ATGTTAGTATCTTTAAAATGGCTTAGAGACTATGTTGATATAGACATAGATGTAAAAGAGTTCGCTGATAAAATGACAAT GACAGGAACTAAAGTTGAAACAATAGATTATTATGGTGAAGAAATAGAAAATATATTGGTTGGAAAGATTTTAGAAATAA AACAACATCCAAATGCTGATAAGTTGGTTGTAACCAAAGTAGATATTGGAGATAAAGTTGTTCAAATAGTTACAGGAGCT ACAAATATATCAGAAGGAGATTATATTCCAGTAGCTGTAAATGGTTCTAAGTTACCTGGAGGAGTTGAAATCAAACAGAC TGATTTCAGAGGTGAATTATCAGATGGTATGATGTGTTCAGCAGCTGAACTAGGTATAGATGAACATTACATTGAGGAGT ATAAAAGAGGTGGTATATATATTTTAGACCACGAAGATTCTTATGAATTAGGAAAAGATATAAAAGATGTTTTAGGATTA AAAGATGCTTTAATAGATTTTGAATTAACTTCAAACAGACCTGATTGTAAATGCATGATGGGTATAGCTAGAGAAGCAGC TGCAACTATAGGAACAAAAGTAAAATATCCTGAAATCGAAGTAAAAGAAAGTGATGAAGAGATAGATTTCAAAGTTGAGA TAGATAATCCAGATTTATGTAGAAGATATGTTGCTAGAATGGTTACAGATGTAAAAATAGAACCTTCTCCATATTGGATG CAAAGAAGACTTACAGAAGCAGGAGTAAGACCTATAAGTAACATAGTCGATATAACAAACTTCGTAATGTTAGAGCTTGG TCAACCACTTCATGCTTTTGATATAAATCAAGTAGAGACTGGAAGAATAGTAGTAAGAAATGCTAAAGATGGAGAGAAAC TTGTAACATTAGATGATGTTGAGAGAACATTAGACAAAGATATGCTAGTTATAACAAATGGAGAAAAATCACTTGGTTTA GCTGGTGTAATGGGTGGTGCTAACTCAGAAATAACTTCTAATACGAAGACTGTACTTTTTGAAAGTGCCAATTTCAAACC AGAAAACATAAGAATGACAGCTAAAAAAGTTGGTATTAGGTCAGAAGCATCTTCAAGAAATGAAAAAGACTTAGACCCTA ATCTTGCAGAGATAGCAGCAAATAGAGCTGCACAACTTGTTGAAATGTTAGGAGCAGGAAAAGTTTTAAAAGGTGTTGTA GATGTATATCCAAATAAACCAGAACCTAAAAAATTGGTAGTAAATCCTCAAAGAATTAACCACCTATTAGGTGTAGATGT ACCAATGGAGCAGTTTGTAGGAATTTTAGAATCATTAGAGTTTAAATGTAATTTGGTAGCTAATGATAAATTAGAAATAG ATGTACCAAGCTTTAGAACAGATATGGAACAAGAAGCTGATGTATGGGAAGAAATAGCTAGAATTTATGGATTTGAGAAT ATACCTTCTGTACAATTAGAAGGAAATACGACAGCAGGAATTAAAACTTCAAAACAAAAATTCATGGATGCTTTAAAAGA TAATTCAACTGCTGTAGGATTAAATGAAATATTAACATATTCATTTGTAAGCCCTAAGGGAGTAGATAAGATAAGAGTAC CAGAAGGTAATGCAAAGAGAAATTTTGTTAAATTACTTAACCCATTAGGAGAAGAAACTTCTGTAATGAGAACTACTTTA ATACCAAATATGTTAGATGTTTTATCAACTAATGTATCTCATAAAATAGAAGAAGTATCTGCATTTGAGTGTGGACATAT ATTCATCCCACAAGATTCAGAATTACCTAAGGAAGAAAATAGAATGTGTGTAGGTATGTATGGTAAAGATGTTGACTTCT TTACACTAAAAGGAACTATAGAAACTATACTTGTAAATGTCGGATTTAAATGTTATGAAATTGAACCTCAAGATAATAAT ACTACCTTCCACCCTGGTAGATGTGCTAAAATAGTGTATAATAATAAATATGTAGGTACATTAGGTGAATTGCATCCAGA TGTTATAGAAAACTACAATCTAGGTCAAAGAGTTTATGTCGCTGAAATAGATATTGACTTTGTATTTGATAATTCTGATA GAACAAAGAATTATGTTCCATTACCAAAATATCCATCTACATCAAGAGATATAGCTCTTATTGTTAAAGATGATGTATTT GTAAAACAAATAGAAGATATAATAAAGGAAAATGGTCAAGGATTAGTAGAAAGCTACAAGTTATTTGATGTTTACAAAGG TTCTCAAATAGAAGCTGGATACAAGTCAATTGCATATTCAATAACTTATAGAAGTAAAGATAAAACTCTAACAGATGAAG ATGTAGCTAAGGTGCATGATAAGATATTAAGTGAATTAAGCGAAAAATTAAATGCTAACTTAAGATCAAATTAA
Upstream 100 bases:
>100_bases GAAAGACTTGCAATGCTTAAATACGAAATAGATGATATTAGATTATTATTCGAAAATGATATGAGATTCTTAAATCAATT TTAATTAGGAGGGTATGTAG
Downstream 100 bases:
>100_bases CAACTAATGTCGGGGGAGGTTAGGATGAACAAAGTAATGGTTAAAATCCATGGCGCTGAATATCCAATGGTTGGAGACAA ATCAGAGAAGTTTATGATTA
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 797; Mature: 797
Protein sequence:
>797_residues MLVSLKWLRDYVDIDIDVKEFADKMTMTGTKVETIDYYGEEIENILVGKILEIKQHPNADKLVVTKVDIGDKVVQIVTGA TNISEGDYIPVAVNGSKLPGGVEIKQTDFRGELSDGMMCSAAELGIDEHYIEEYKRGGIYILDHEDSYELGKDIKDVLGL KDALIDFELTSNRPDCKCMMGIAREAAATIGTKVKYPEIEVKESDEEIDFKVEIDNPDLCRRYVARMVTDVKIEPSPYWM QRRLTEAGVRPISNIVDITNFVMLELGQPLHAFDINQVETGRIVVRNAKDGEKLVTLDDVERTLDKDMLVITNGEKSLGL AGVMGGANSEITSNTKTVLFESANFKPENIRMTAKKVGIRSEASSRNEKDLDPNLAEIAANRAAQLVEMLGAGKVLKGVV DVYPNKPEPKKLVVNPQRINHLLGVDVPMEQFVGILESLEFKCNLVANDKLEIDVPSFRTDMEQEADVWEEIARIYGFEN IPSVQLEGNTTAGIKTSKQKFMDALKDNSTAVGLNEILTYSFVSPKGVDKIRVPEGNAKRNFVKLLNPLGEETSVMRTTL IPNMLDVLSTNVSHKIEEVSAFECGHIFIPQDSELPKEENRMCVGMYGKDVDFFTLKGTIETILVNVGFKCYEIEPQDNN TTFHPGRCAKIVYNNKYVGTLGELHPDVIENYNLGQRVYVAEIDIDFVFDNSDRTKNYVPLPKYPSTSRDIALIVKDDVF VKQIEDIIKENGQGLVESYKLFDVYKGSQIEAGYKSIAYSITYRSKDKTLTDEDVAKVHDKILSELSEKLNANLRSN
Sequences:
>Translated_797_residues MLVSLKWLRDYVDIDIDVKEFADKMTMTGTKVETIDYYGEEIENILVGKILEIKQHPNADKLVVTKVDIGDKVVQIVTGA TNISEGDYIPVAVNGSKLPGGVEIKQTDFRGELSDGMMCSAAELGIDEHYIEEYKRGGIYILDHEDSYELGKDIKDVLGL KDALIDFELTSNRPDCKCMMGIAREAAATIGTKVKYPEIEVKESDEEIDFKVEIDNPDLCRRYVARMVTDVKIEPSPYWM QRRLTEAGVRPISNIVDITNFVMLELGQPLHAFDINQVETGRIVVRNAKDGEKLVTLDDVERTLDKDMLVITNGEKSLGL AGVMGGANSEITSNTKTVLFESANFKPENIRMTAKKVGIRSEASSRNEKDLDPNLAEIAANRAAQLVEMLGAGKVLKGVV DVYPNKPEPKKLVVNPQRINHLLGVDVPMEQFVGILESLEFKCNLVANDKLEIDVPSFRTDMEQEADVWEEIARIYGFEN IPSVQLEGNTTAGIKTSKQKFMDALKDNSTAVGLNEILTYSFVSPKGVDKIRVPEGNAKRNFVKLLNPLGEETSVMRTTL IPNMLDVLSTNVSHKIEEVSAFECGHIFIPQDSELPKEENRMCVGMYGKDVDFFTLKGTIETILVNVGFKCYEIEPQDNN TTFHPGRCAKIVYNNKYVGTLGELHPDVIENYNLGQRVYVAEIDIDFVFDNSDRTKNYVPLPKYPSTSRDIALIVKDDVF VKQIEDIIKENGQGLVESYKLFDVYKGSQIEAGYKSIAYSITYRSKDKTLTDEDVAKVHDKILSELSEKLNANLRSN >Mature_797_residues MLVSLKWLRDYVDIDIDVKEFADKMTMTGTKVETIDYYGEEIENILVGKILEIKQHPNADKLVVTKVDIGDKVVQIVTGA TNISEGDYIPVAVNGSKLPGGVEIKQTDFRGELSDGMMCSAAELGIDEHYIEEYKRGGIYILDHEDSYELGKDIKDVLGL KDALIDFELTSNRPDCKCMMGIAREAAATIGTKVKYPEIEVKESDEEIDFKVEIDNPDLCRRYVARMVTDVKIEPSPYWM QRRLTEAGVRPISNIVDITNFVMLELGQPLHAFDINQVETGRIVVRNAKDGEKLVTLDDVERTLDKDMLVITNGEKSLGL AGVMGGANSEITSNTKTVLFESANFKPENIRMTAKKVGIRSEASSRNEKDLDPNLAEIAANRAAQLVEMLGAGKVLKGVV DVYPNKPEPKKLVVNPQRINHLLGVDVPMEQFVGILESLEFKCNLVANDKLEIDVPSFRTDMEQEADVWEEIARIYGFEN IPSVQLEGNTTAGIKTSKQKFMDALKDNSTAVGLNEILTYSFVSPKGVDKIRVPEGNAKRNFVKLLNPLGEETSVMRTTL IPNMLDVLSTNVSHKIEEVSAFECGHIFIPQDSELPKEENRMCVGMYGKDVDFFTLKGTIETILVNVGFKCYEIEPQDNN TTFHPGRCAKIVYNNKYVGTLGELHPDVIENYNLGQRVYVAEIDIDFVFDNSDRTKNYVPLPKYPSTSRDIALIVKDDVF VKQIEDIIKENGQGLVESYKLFDVYKGSQIEAGYKSIAYSITYRSKDKTLTDEDVAKVHDKILSELSEKLNANLRSN
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI124028525, Length=291, Percent_Identity=27.4914089347079, Blast_Score=99, Evalue=2e-20, Organism=Escherichia coli, GI1788006, Length=816, Percent_Identity=34.1911764705882, Blast_Score=427, Evalue=1e-121, Organism=Caenorhabditis elegans, GI17533403, Length=300, Percent_Identity=29.3333333333333, Blast_Score=108, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6323089, Length=294, Percent_Identity=27.2108843537415, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI21355211, Length=303, Percent_Identity=25.7425742574257, Blast_Score=97, Evalue=5e-20,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 89235; Mature: 89235
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVSLKWLRDYVDIDIDVKEFADKMTMTGTKVETIDYYGEEIENILVGKILEIKQHPNAD CEEEHHHHHHHHCCCEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCC KLVVTKVDIGDKVVQIVTGATNISEGDYIPVAVNGSKLPGGVEIKQTDFRGELSDGMMCS EEEEEEECCCCCEEHEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEE AAELGIDEHYIEEYKRGGIYILDHEDSYELGKDIKDVLGLKDALIDFELTSNRPDCKCMM HHHCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCHHHHEEEEECCCCCCHHHHH GIAREAAATIGTKVKYPEIEVKESDEEIDFKVEIDNPDLCRRYVARMVTDVKIEPSPYWM HHHHHHHHHHCCEEECCEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHCCEECCCHHHH QRRLTEAGVRPISNIVDITNFVMLELGQPLHAFDINQVETGRIVVRNAKDGEKLVTLDDV HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEECCEECCCEEEEEECCCCCEEEEHHHH ERTLDKDMLVITNGEKSLGLAGVMGGANSEITSNTKTVLFESANFKPENIRMTAKKVGIR HHHHCCCEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCEEEEHHHCCCC SEASSRNEKDLDPNLAEIAANRAAQLVEMLGAGKVLKGVVDVYPNKPEPKKLVVNPQRIN CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEECHHHHH HLLGVDVPMEQFVGILESLEFKCNLVANDKLEIDVPSFRTDMEQEADVWEEIARIYGFEN HHHCCCCCHHHHHHHHHCCCEEEEEEECCEEEEECCHHHCCCHHHHHHHHHHHHHHCCCC IPSVQLEGNTTAGIKTSKQKFMDALKDNSTAVGLNEILTYSFVSPKGVDKIRVPEGNAKR CCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHEEEECCCCCCCEEECCCCCCHH NFVKLLNPLGEETSVMRTTLIPNMLDVLSTNVSHKIEEVSAFECGHIFIPQDSELPKEEN HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEECCCCCCCCHHHC RMCVGMYGKDVDFFTLKGTIETILVNVGFKCYEIEPQDNNTTFHPGRCAKIVYNNKYVGT CEEEEEECCCCEEEEECCHHEEHHEECCEEEEEECCCCCCCEECCCCEEEEEECCCEEEC LGELHPDVIENYNLGQRVYVAEIDIDFVFDNSDRTKNYVPLPKYPSTSRDIALIVKDDVF HHHCCHHHHCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCHH VKQIEDIIKENGQGLVESYKLFDVYKGSQIEAGYKSIAYSITYRSKDKTLTDEDVAKVHD HHHHHHHHHCCCCCHHHHHHEEEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH KILSELSEKLNANLRSN HHHHHHHHHHCCCCCCC >Mature Secondary Structure MLVSLKWLRDYVDIDIDVKEFADKMTMTGTKVETIDYYGEEIENILVGKILEIKQHPNAD CEEEHHHHHHHHCCCEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCC KLVVTKVDIGDKVVQIVTGATNISEGDYIPVAVNGSKLPGGVEIKQTDFRGELSDGMMCS EEEEEEECCCCCEEHEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEE AAELGIDEHYIEEYKRGGIYILDHEDSYELGKDIKDVLGLKDALIDFELTSNRPDCKCMM HHHCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCHHHHEEEEECCCCCCHHHHH GIAREAAATIGTKVKYPEIEVKESDEEIDFKVEIDNPDLCRRYVARMVTDVKIEPSPYWM HHHHHHHHHHCCEEECCEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHCCEECCCHHHH QRRLTEAGVRPISNIVDITNFVMLELGQPLHAFDINQVETGRIVVRNAKDGEKLVTLDDV HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEECCEECCCEEEEEECCCCCEEEEHHHH ERTLDKDMLVITNGEKSLGLAGVMGGANSEITSNTKTVLFESANFKPENIRMTAKKVGIR HHHHCCCEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCEEEEHHHCCCC SEASSRNEKDLDPNLAEIAANRAAQLVEMLGAGKVLKGVVDVYPNKPEPKKLVVNPQRIN CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEECHHHHH HLLGVDVPMEQFVGILESLEFKCNLVANDKLEIDVPSFRTDMEQEADVWEEIARIYGFEN HHHCCCCCHHHHHHHHHCCCEEEEEEECCEEEEECCHHHCCCHHHHHHHHHHHHHHCCCC IPSVQLEGNTTAGIKTSKQKFMDALKDNSTAVGLNEILTYSFVSPKGVDKIRVPEGNAKR CCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHEEEECCCCCCCEEECCCCCCHH NFVKLLNPLGEETSVMRTTLIPNMLDVLSTNVSHKIEEVSAFECGHIFIPQDSELPKEEN HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEECCCCCCCCHHHC RMCVGMYGKDVDFFTLKGTIETILVNVGFKCYEIEPQDNNTTFHPGRCAKIVYNNKYVGT CEEEEEECCCCEEEEECCHHEEHHEECCEEEEEECCCCCCCEECCCCEEEEEECCCEEEC LGELHPDVIENYNLGQRVYVAEIDIDFVFDNSDRTKNYVPLPKYPSTSRDIALIVKDDVF HHHCCHHHHCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCHH VKQIEDIIKENGQGLVESYKLFDVYKGSQIEAGYKSIAYSITYRSKDKTLTDEDVAKVHD HHHHHHHHHCCCCCHHHHHHEEEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH KILSELSEKLNANLRSN HHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]