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The map label for this gene is tcdE

Identifier: 126698239

GI number: 126698239

Start: 794615

End: 795115

Strand: Direct

Name: tcdE

Synonym: CD0661

Alternate gene names: 126698239

Gene position: 794615-795115 (Clockwise)

Preceding gene: 126698238

Following gene: 126698240

Centisome position: 18.52

GC content: 24.55

Gene sequence:

>501_bases
ATGCACAGTAGTTCACCTTTTTATATTTCTAATGGTAACAAAATATTTTTTTATATAAACCTAGGAGGCGTTATGAATAT
GACAATATCTTTTTTATCAGAGCATATATTTATAAAGTTAGTAATTTTAACTATATCATTTGATACATTATTAGGATGTT
TAAGTGCAATAAAAAGTCGTAAATTTAATTCTAGTTTTGGAATAGATGGAGGAATCAGAAAAGTAGCAATGATAGCATGT
ATATTTTTTTTATCAGTAGTTGACATTCTTACAAAGTTTAACTTTTTATTTATGTTACCACAAGATTGTATCAATTTTTT
AAGACTAAAACATCTTGGAATATCTGAATTTTTCTCTATTTTATTTATTTTATATGAAAGTGTAAGTATATTAAAAAATA
TGTGCTTATGTGGATTACCAGTACCTAAGAGATTAAAGGAAAAAATAGCAATTTTACTAGATGCAATGACAGATGAAATG
AATGCTAAGGATGAAAAGTAA

Upstream 100 bases:

>100_bases
CCTCTTATACTTAAATATATAAAAATAAACAAAATGATACACTACATAAAGTGTTCTATCTAATATGAAGATTTACCAAT
AAAAAGGTGGACTATGATGA

Downstream 100 bases:

>100_bases
GTAATGGTAGATATAATAAAGATATTAACAAATAAAAAGTGTTATCCAAATAAGAATAGCTGAAAGTTATCATAATTCAT
GAAACTAATAATGAAAACGA

Product: cell wall hydrolase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLGCLSAIKSRKFNSSFGIDGGIRKVAMIAC
IFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSILFILYESVSILKNMCLCGLPVPKRLKEKIAILLDAMTDEM
NAKDEK

Sequences:

>Translated_166_residues
MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLGCLSAIKSRKFNSSFGIDGGIRKVAMIAC
IFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSILFILYESVSILKNMCLCGLPVPKRLKEKIAILLDAMTDEM
NAKDEK
>Mature_166_residues
MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLGCLSAIKSRKFNSSFGIDGGIRKVAMIAC
IFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSILFILYESVSILKNMCLCGLPVPKRLKEKIAILLDAMTDEM
NAKDEK

Specific function: May be involved in the regulation and/or secretion of toxins A and B

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UTXA_CLODI (P16153)

Other databases:

- EMBL:   X60984
- EMBL:   X60984
- EMBL:   M30308
- EMBL:   M30308
- EMBL:   X92982
- EMBL:   X51797
- PIR:   B37052
- InterPro:   IPR006480
- TIGRFAMs:   TIGR01593

Pfam domain/function: PF05105 Phage_holin_4

EC number: NA

Molecular weight: Translated: 18800; Mature: 18800

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLGCLSAIKSR
CCCCCCEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHCCHHHHHHH
LFILYESVSILKNMCLCGLPVPKRLKEKIAILLDAMTDEMNAKDEK
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLGCLSAIKSR
CCCCCCEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHCCHHHHHHH
LFILYESVSILKNMCLCGLPVPKRLKEKIAILLDAMTDEMNAKDEK
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1603068; 2105276; 2109310