| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698233
Identifier: 126698233
GI number: 126698233
Start: 780838
End: 781572
Strand: Direct
Name: 126698233
Synonym: CD0655
Alternate gene names: NA
Gene position: 780838-781572 (Clockwise)
Preceding gene: 126698232
Following gene: 126698234
Centisome position: 18.2
GC content: 28.98
Gene sequence:
>735_bases ATGAATTTAGCAAAGGGATTAGATGTTTTAAAAATTTCATCAAATGTATTAGGTGAAGATAAAGTTATGTATATTCCTGC AATCTACACAGAAGATGATGCAACACTTATTGACACAGGTCTTCCGGGTCAAGGTGATTTAATAATTGATGCTCTTAATA AAAGTAACACGAGCTTTGATAGGTTAAAAAATATAATAATTACTCATCATGATATAGACCATATAGGAAACATAAATTAT CTAAGAGAAAAATCTAAGAATAATATCAAAGTATATGCATACAAAAGTGAAGTCAGCTATATAACAGGAGAAGAAACTCC TTTTAAACTTTATATGTTGGAACAAATGGTAGATAAAATTGATGATAAGATGCTTAGTATGCTAAATGTTATGGGACTTG GATTTAAATCATCATATACTAAAGTAGATGTGTCATTAGATAACCATGAAAAATTGAATCTAGGTGAGGAAATAGAAGTT ATACATACAGGAGGTCACACTAGAGGTCACATATGTCTTTATTTAAAAGAGTCTAAAGTACTTATTGCTGGAGATTTGTT ACAGGTAGAAAATGGAGAACTTAAGCCTGTTGATGTAATGCACAGCAACAAACAAGAGTTAAAAGATGCTATTAAAAATA TAAGTAATTATGATATAGAAACGATAGTTTTTAGTCATGGTGGATTATATCAAAGAAACATAATTGAAACATTGAAAAAC CTAATTATTGAGTAG
Upstream 100 bases:
>100_bases TAATTTTTAATTAATAAAATATAACTAGAGGAAAATCTACATTTTCTCAATTTCTTTAATTAAATTGACCTCTAATTAAG TAATTATAAGGAGAAAAATT
Downstream 100 bases:
>100_bases TACTATATGATTTACAATAATTTCTTAAATTACTTAAAATTATATCTAAAGATGTAGAATCAAAATTAAATATAAGTAAT AAGAATTTTGCTTTAAAATT
Product: metallo-beta-lactamase superfamily protein
Products: NA
Alternate protein names: Beta-Lactamase Domain-Containing Protein; Hydrolase; Metallo-Beta-Lactamase Superfamily Protein; Metal-Dependent Hydrolase; Zn-Dependent Hydrolase; Metallo-Beta-Lactamase Family Protein; Hydroxyacylglutathione Hydrolase Glyoxalase II; Zinc-Dependent Hydrolase; Metal Dependent Hydrolase
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MNLAKGLDVLKISSNVLGEDKVMYIPAIYTEDDATLIDTGLPGQGDLIIDALNKSNTSFDRLKNIIITHHDIDHIGNINY LREKSKNNIKVYAYKSEVSYITGEETPFKLYMLEQMVDKIDDKMLSMLNVMGLGFKSSYTKVDVSLDNHEKLNLGEEIEV IHTGGHTRGHICLYLKESKVLIAGDLLQVENGELKPVDVMHSNKQELKDAIKNISNYDIETIVFSHGGLYQRNIIETLKN LIIE
Sequences:
>Translated_244_residues MNLAKGLDVLKISSNVLGEDKVMYIPAIYTEDDATLIDTGLPGQGDLIIDALNKSNTSFDRLKNIIITHHDIDHIGNINY LREKSKNNIKVYAYKSEVSYITGEETPFKLYMLEQMVDKIDDKMLSMLNVMGLGFKSSYTKVDVSLDNHEKLNLGEEIEV IHTGGHTRGHICLYLKESKVLIAGDLLQVENGELKPVDVMHSNKQELKDAIKNISNYDIETIVFSHGGLYQRNIIETLKN LIIE >Mature_244_residues MNLAKGLDVLKISSNVLGEDKVMYIPAIYTEDDATLIDTGLPGQGDLIIDALNKSNTSFDRLKNIIITHHDIDHIGNINY LREKSKNNIKVYAYKSEVSYITGEETPFKLYMLEQMVDKIDDKMLSMLNVMGLGFKSSYTKVDVSLDNHEKLNLGEEIEV IHTGGHTRGHICLYLKESKVLIAGDLLQVENGELKPVDVMHSNKQELKDAIKNISNYDIETIVFSHGGLYQRNIIETLKN LIIE
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27525; Mature: 27525
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: PS00126 PDEASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLAKGLDVLKISSNVLGEDKVMYIPAIYTEDDATLIDTGLPGQGDLIIDALNKSNTSFD CCCHHCCEEEEECCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCEEEEECCCCCCCHH RLKNIIITHHDIDHIGNINYLREKSKNNIKVYAYKSEVSYITGEETPFKLYMLEQMVDKI HHHHEEEEECCHHHCCCCHHHHHCCCCCEEEEEEECCEEEECCCCCCEEHHHHHHHHHHH DDKMLSMLNVMGLGFKSSYTKVDVSLDNHEKLNLGEEIEVIHTGGHTRGHICLYLKESKV HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCE LIAGDLLQVENGELKPVDVMHSNKQELKDAIKNISNYDIETIVFSHGGLYQRNIIETLKN EEEECEEEECCCCCCEEHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH LIIE HHCC >Mature Secondary Structure MNLAKGLDVLKISSNVLGEDKVMYIPAIYTEDDATLIDTGLPGQGDLIIDALNKSNTSFD CCCHHCCEEEEECCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCEEEEECCCCCCCHH RLKNIIITHHDIDHIGNINYLREKSKNNIKVYAYKSEVSYITGEETPFKLYMLEQMVDKI HHHHEEEEECCHHHCCCCHHHHHCCCCCEEEEEEECCEEEECCCCCCEEHHHHHHHHHHH DDKMLSMLNVMGLGFKSSYTKVDVSLDNHEKLNLGEEIEVIHTGGHTRGHICLYLKESKV HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCE LIAGDLLQVENGELKPVDVMHSNKQELKDAIKNISNYDIETIVFSHGGLYQRNIIETLKN EEEECEEEECCCCCCEEHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH LIIE HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA