| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is yqkA [H]
Identifier: 126698187
GI number: 126698187
Start: 731290
End: 731859
Strand: Direct
Name: yqkA [H]
Synonym: CD0609
Alternate gene names: 126698187
Gene position: 731290-731859 (Clockwise)
Preceding gene: 126698185
Following gene: 126698200
Centisome position: 17.05
GC content: 31.58
Gene sequence:
>570_bases ATGAAAAAGAAGTTGGAAGATATGACTTTAGAGGAGTTATGGAACTTGTTTCCTATATTTTTGACTACTCACAAAGAATG TTGGAAAAATTGGTTTAAAGAAGAACAATATAGACTAACTGGAATATTGCCAATGCAAAAAATTGTTAGAATAAGTCATA TTGGAAGTACTTCTGTGAGTACGATTTATGCCAAGCCCATTGTTGACATACTGATTGAGATAATTCCTGATTATAATATG AAAGATATTAAAGATTTGATTGAGTCGAATGGATATATTTGTATGTCTGAGAGCAGTAGTAGGCTTTCACTTAATAAAGG GTATACAGTAGATGGGTTTGAAGAACGAGTTTTTCATTTGCATATAAGGTATGTAGGTGATAATGATGAGTTGTTTTTTA GAGATTACTTAATTGACCACTCAGATGTTGCAAAGGAGTATGAAAAACTTAAGTTGGACCTTTGGAAGAAGTATGAGCAT AATCGTGATGCTTATACAGATAGTAAACTAGATTTTGTTAGGGAGTTTACTGAAAAGGCAAAGGTGTTGTATTCTAATAG ATATAATTAG
Upstream 100 bases:
>100_bases ATAATTAGAAAAATGATTTGATAAAAAATAAAGTTAAATATTAACTAAGTAAATTTGAAAAAGAAAAAATATAAAGTACA AATTTAAAGGGAGGTAACTA
Downstream 100 bases:
>100_bases AAATAGGTACAATTAGATATTTATCTTATATATCGTATTATATTTTTTAAGAAAGTAATTAATAGAAAAAGGGGTTGTTT CAAAATGGAGAGATAAATCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MKKKLEDMTLEELWNLFPIFLTTHKECWKNWFKEEQYRLTGILPMQKIVRISHIGSTSVSTIYAKPIVDILIEIIPDYNM KDIKDLIESNGYICMSESSSRLSLNKGYTVDGFEERVFHLHIRYVGDNDELFFRDYLIDHSDVAKEYEKLKLDLWKKYEH NRDAYTDSKLDFVREFTEKAKVLYSNRYN
Sequences:
>Translated_189_residues MKKKLEDMTLEELWNLFPIFLTTHKECWKNWFKEEQYRLTGILPMQKIVRISHIGSTSVSTIYAKPIVDILIEIIPDYNM KDIKDLIESNGYICMSESSSRLSLNKGYTVDGFEERVFHLHIRYVGDNDELFFRDYLIDHSDVAKEYEKLKLDLWKKYEH NRDAYTDSKLDFVREFTEKAKVLYSNRYN >Mature_189_residues MKKKLEDMTLEELWNLFPIFLTTHKECWKNWFKEEQYRLTGILPMQKIVRISHIGSTSVSTIYAKPIVDILIEIIPDYNM KDIKDLIESNGYICMSESSSRLSLNKGYTVDGFEERVFHLHIRYVGDNDELFFRDYLIDHSDVAKEYEKLKLDLWKKYEH NRDAYTDSKLDFVREFTEKAKVLYSNRYN
Specific function: Unknown
COG id: COG2320
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 N-acetyltransferase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000182 - InterPro: IPR016181 - InterPro: IPR007344 [H]
Pfam domain/function: PF00583 Acetyltransf_1; PF04229 UPF0157 [H]
EC number: NA
Molecular weight: Translated: 22686; Mature: 22686
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKLEDMTLEELWNLFPIFLTTHKECWKNWFKEEQYRLTGILPMQKIVRISHIGSTSVS CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHH TIYAKPIVDILIEIIPDYNMKDIKDLIESNGYICMSESSSRLSLNKGYTVDGFEERVFHL HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCCCCCCCHHHEEEEE HIRYVGDNDELFFRDYLIDHSDVAKEYEKLKLDLWKKYEHNRDAYTDSKLDFVREFTEKA EEEEECCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH KVLYSNRYN HHHHCCCCC >Mature Secondary Structure MKKKLEDMTLEELWNLFPIFLTTHKECWKNWFKEEQYRLTGILPMQKIVRISHIGSTSVS CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHH TIYAKPIVDILIEIIPDYNMKDIKDLIESNGYICMSESSSRLSLNKGYTVDGFEERVFHL HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCCCCCCCHHHEEEEE HIRYVGDNDELFFRDYLIDHSDVAKEYEKLKLDLWKKYEHNRDAYTDSKLDFVREFTEKA EEEEECCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH KVLYSNRYN HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]