| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698167
Identifier: 126698167
GI number: 126698167
Start: 705775
End: 708270
Strand: Direct
Name: 126698167
Synonym: CD0589
Alternate gene names: NA
Gene position: 705775-708270 (Clockwise)
Preceding gene: 126698166
Following gene: 126698168
Centisome position: 16.45
GC content: 30.37
Gene sequence:
>2496_bases ATGCCAGAAAATAACAATCAACTTTTAGAAGAAATAACACTCTTATTAAATGAAGGAAAAGTAGCAATAAATAAGGCTGA AAATCAAAATTTAATTCTAATTCTTGGTGGGACAGGATGTGGCAAAAGTACTGCAATTAACTATCTTGCAGGATGTGTAA TGATGGAAGTAGAAGATGAAGATACTGGTATATCATATATTGATTGCTTAGACCCTGTGGCAGAGATTGGTTCAGGAGCT GTTTCTCAAACTTTATACCCGAACATTGTAAATATGAGAAAACCAATAGAAGGAATGGATGCAAAATTATGTGATACTGC AGGTTTTAGCGACAATAGGGGAGTAGCCCATGATATTAGTGCAGCAGTTTCATTAGGTGAAGTATTTAAAAATTCTGCAT CTATATGTGCAGTAATTGTATTGATACCAGAAGCAGATATATTAGATTCTAGACTTACAAAAGTACTAGACCTGTTCCAA CAGTTAAATATGTGTCTTCATAAAGAAAATTTTAAGGGTAGTATAACTTTTTTCATTTCAAAAAGTTTCTTAGGAAGAAC AGAAAAACAAATATATAATGTTATAAAAAGAAAATATGAACAATTATGCGAAAATTTAGACAGTAATATAGAGGAAAAAG CTTGGTTATTTGAAGAATTGCTAAAAGATAATGGAAAAAATATTCATCTTTGTAAGCCACTTGCATCAGATGAGAGGGAA GGCTTATTAAAGCAAGTACTAGAATTAGATGAAGTTAAAGATAAGACATCAGCATTCCAATATCCAATTAGTGCAGATGC AAGATTAGTTTTAGATACGTTGATAAAAGAAATTCAAAACAATATCGTATCTAGCCTAGAAGATTATGTTAAGGCGTATA CAGAAGATTTTATCAATATTATTGGAAGTATAACAATGATTCAAGAAATAACAAAATATGATGAGGTTGTAAAAGTATTT AAAAACTGGTTGGAAAGTACAACAAGTCTTACTATAGAGAGATTTATCAACGTATTAGCCAAACAAAGTGGCTTATTCTT ACAAGATAGTTGCATGAAATTACAAAATAAGATAAAAGGAAACTTAGATATAATTGATGCTTTAAGTAAATATACAGAAC ATGGAACTGGGGAAATTTTATTACCTTCTGTACATATGGAATTTATTATAGAAAAGGCAAGTAAGAAGATAATGGAACAA AACTTCATTATAATAAGAAAGAATTTAGAAAAAGTTTTAGTTTCTTATGAAGTGCAAAAACAGGTATTTACATTACCAAA TAGAGAAAAATTAATGGAAGTTGCAAATAAAAAGGATTATGTATATAGTGTAAGTGATTTTAATTCAATTTTGACAAATG TTACAGTTACACAAAATGAAGAGTTAGAAGACAGTATAACAAGATTAAGTGCATATGGAGAAGAAGGTAATGAGATAATT AGAGAATTTATTGGTAAATACATTTTAAATCCATTTATAGTAAAAACAATTAATATTAATGATAAGAAAGGTATTGAAAT AAGAGCATTAATTCCAAACTTAGTAATTAGCAGTGTATTGGAATATTTCAAAAATAGAAAAGTAGATGACAATGTTTCTA CTTTTATGTTCTTTGCTAAAGATACTATTTATATGGATGATAACCTTGGAATGAACTTTGCATCAGAGAAAAATATTATT CTTGCTTCTAACAATCTTGATGTAGGTAGTAATGTAAAAATTAATGTAAGTGGAAAGAGCGGAGAACTTGTAGATAATTC TATGTATGGGAAAAATGGTGAAGATGGTAGAGATGCAGGTAATATTTACTTATATATTAAAGAAGAAATTAGAAATTATC GTCTAACACTGATTGCAAATGGAGGAAATGGTTCTAAAGGAATAGATGGAGAAAATGGTGAAACAGGAGCTTCTGGAAGT AATGGAGCTGATGCAGGATATACAAGTTATTTCCACGGACAGATGTTTAAAGGGTATTTTGAAAAAGGTACAAGTGGCAA AAAAGGTGAAAAAGGTGGAGCTGGTGGAAATGCTGGAAGAGGTGGAAATGCTGGTAAGAAAGGTAATATTTACTTCATTT CAGATTCAGAGGAACAAAAAAATAGAATAATTAATCATTGTGATATAACAGTGAAAGATGGAGAAGCAGGTCCAAATGGT AGACCAGGTTTAGGTGGATATGGAGGAAGTGGTGGCTATCACGGATATAATACACTTTCATTTTCTCCAAGTGGTATAGA TAAGACTGTATACTATACAGGATATTTTACAAGTTGGGATTATAAGTTAGATAGTATAATTAAATATCATATAGAATTTA GTGGTGGAAGCTGGAATGAAGGTAAAACAGGACCAGCAAGAGAATACGCTGAATATGGAGATAGAGGAGACAATGGAGGA TTTAATGCTCCAAATACTAAGTTATCAACAGCTGTTTCAAAGGTAGAAGAGAATCTTATTAAAGAAAAATATCAAGGCTA TTGTTCCGAAATATAG
Upstream 100 bases:
>100_bases AAAAATAAAAAATAAATTTAAATATAGTCTAAAAACTTTGTAATCTACTTAAGGGATTAAACTTTATTTAAATAAAATAT ATAACCAAGGGGGAAAATAA
Downstream 100 bases:
>100_bases AAAGGGATGGATGTATGGCAAATAAACTTTATAGTGAAATCGTAAACCTTTTGGAAGAAGGAAGAGACGAGCTTAGAAAA TATGACTTAAAAGAAAAGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 831; Mature: 830
Protein sequence:
>831_residues MPENNNQLLEEITLLLNEGKVAINKAENQNLILILGGTGCGKSTAINYLAGCVMMEVEDEDTGISYIDCLDPVAEIGSGA VSQTLYPNIVNMRKPIEGMDAKLCDTAGFSDNRGVAHDISAAVSLGEVFKNSASICAVIVLIPEADILDSRLTKVLDLFQ QLNMCLHKENFKGSITFFISKSFLGRTEKQIYNVIKRKYEQLCENLDSNIEEKAWLFEELLKDNGKNIHLCKPLASDERE GLLKQVLELDEVKDKTSAFQYPISADARLVLDTLIKEIQNNIVSSLEDYVKAYTEDFINIIGSITMIQEITKYDEVVKVF KNWLESTTSLTIERFINVLAKQSGLFLQDSCMKLQNKIKGNLDIIDALSKYTEHGTGEILLPSVHMEFIIEKASKKIMEQ NFIIIRKNLEKVLVSYEVQKQVFTLPNREKLMEVANKKDYVYSVSDFNSILTNVTVTQNEELEDSITRLSAYGEEGNEII REFIGKYILNPFIVKTININDKKGIEIRALIPNLVISSVLEYFKNRKVDDNVSTFMFFAKDTIYMDDNLGMNFASEKNII LASNNLDVGSNVKINVSGKSGELVDNSMYGKNGEDGRDAGNIYLYIKEEIRNYRLTLIANGGNGSKGIDGENGETGASGS NGADAGYTSYFHGQMFKGYFEKGTSGKKGEKGGAGGNAGRGGNAGKKGNIYFISDSEEQKNRIINHCDITVKDGEAGPNG RPGLGGYGGSGGYHGYNTLSFSPSGIDKTVYYTGYFTSWDYKLDSIIKYHIEFSGGSWNEGKTGPAREYAEYGDRGDNGG FNAPNTKLSTAVSKVEENLIKEKYQGYCSEI
Sequences:
>Translated_831_residues MPENNNQLLEEITLLLNEGKVAINKAENQNLILILGGTGCGKSTAINYLAGCVMMEVEDEDTGISYIDCLDPVAEIGSGA VSQTLYPNIVNMRKPIEGMDAKLCDTAGFSDNRGVAHDISAAVSLGEVFKNSASICAVIVLIPEADILDSRLTKVLDLFQ QLNMCLHKENFKGSITFFISKSFLGRTEKQIYNVIKRKYEQLCENLDSNIEEKAWLFEELLKDNGKNIHLCKPLASDERE GLLKQVLELDEVKDKTSAFQYPISADARLVLDTLIKEIQNNIVSSLEDYVKAYTEDFINIIGSITMIQEITKYDEVVKVF KNWLESTTSLTIERFINVLAKQSGLFLQDSCMKLQNKIKGNLDIIDALSKYTEHGTGEILLPSVHMEFIIEKASKKIMEQ NFIIIRKNLEKVLVSYEVQKQVFTLPNREKLMEVANKKDYVYSVSDFNSILTNVTVTQNEELEDSITRLSAYGEEGNEII REFIGKYILNPFIVKTININDKKGIEIRALIPNLVISSVLEYFKNRKVDDNVSTFMFFAKDTIYMDDNLGMNFASEKNII LASNNLDVGSNVKINVSGKSGELVDNSMYGKNGEDGRDAGNIYLYIKEEIRNYRLTLIANGGNGSKGIDGENGETGASGS NGADAGYTSYFHGQMFKGYFEKGTSGKKGEKGGAGGNAGRGGNAGKKGNIYFISDSEEQKNRIINHCDITVKDGEAGPNG RPGLGGYGGSGGYHGYNTLSFSPSGIDKTVYYTGYFTSWDYKLDSIIKYHIEFSGGSWNEGKTGPAREYAEYGDRGDNGG FNAPNTKLSTAVSKVEENLIKEKYQGYCSEI >Mature_830_residues PENNNQLLEEITLLLNEGKVAINKAENQNLILILGGTGCGKSTAINYLAGCVMMEVEDEDTGISYIDCLDPVAEIGSGAV SQTLYPNIVNMRKPIEGMDAKLCDTAGFSDNRGVAHDISAAVSLGEVFKNSASICAVIVLIPEADILDSRLTKVLDLFQQ LNMCLHKENFKGSITFFISKSFLGRTEKQIYNVIKRKYEQLCENLDSNIEEKAWLFEELLKDNGKNIHLCKPLASDEREG LLKQVLELDEVKDKTSAFQYPISADARLVLDTLIKEIQNNIVSSLEDYVKAYTEDFINIIGSITMIQEITKYDEVVKVFK NWLESTTSLTIERFINVLAKQSGLFLQDSCMKLQNKIKGNLDIIDALSKYTEHGTGEILLPSVHMEFIIEKASKKIMEQN FIIIRKNLEKVLVSYEVQKQVFTLPNREKLMEVANKKDYVYSVSDFNSILTNVTVTQNEELEDSITRLSAYGEEGNEIIR EFIGKYILNPFIVKTININDKKGIEIRALIPNLVISSVLEYFKNRKVDDNVSTFMFFAKDTIYMDDNLGMNFASEKNIIL ASNNLDVGSNVKINVSGKSGELVDNSMYGKNGEDGRDAGNIYLYIKEEIRNYRLTLIANGGNGSKGIDGENGETGASGSN GADAGYTSYFHGQMFKGYFEKGTSGKKGEKGGAGGNAGRGGNAGKKGNIYFISDSEEQKNRIINHCDITVKDGEAGPNGR PGLGGYGGSGGYHGYNTLSFSPSGIDKTVYYTGYFTSWDYKLDSIIKYHIEFSGGSWNEGKTGPAREYAEYGDRGDNGGF NAPNTKLSTAVSKVEENLIKEKYQGYCSEI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92053; Mature: 91922
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPENNNQLLEEITLLLNEGKVAINKAENQNLILILGGTGCGKSTAINYLAGCVMMEVEDE CCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHCEEEEEEECC DTGISYIDCLDPVAEIGSGAVSQTLYPNIVNMRKPIEGMDAKLCDTAGFSDNRGVAHDIS CCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCHHHHH AAVSLGEVFKNSASICAVIVLIPEADILDSRLTKVLDLFQQLNMCLHKENFKGSITFFIS HHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE KSFLGRTEKQIYNVIKRKYEQLCENLDSNIEEKAWLFEELLKDNGKNIHLCKPLASDERE HHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH GLLKQVLELDEVKDKTSAFQYPISADARLVLDTLIKEIQNNIVSSLEDYVKAYTEDFINI HHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGSITMIQEITKYDEVVKVFKNWLESTTSLTIERFINVLAKQSGLFLQDSCMKLQNKIKG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHCC NLDIIDALSKYTEHGTGEILLPSVHMEFIIEKASKKIMEQNFIIIRKNLEKVLVSYEVQK CHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHH QVFTLPNREKLMEVANKKDYVYSVSDFNSILTNVTVTQNEELEDSITRLSAYGEEGNEII HHHCCCCHHHHHHHHCCCCEEEEHHHHHHHHHCEEECCCCHHHHHHHHHHHCCCCHHHHH REFIGKYILNPFIVKTININDKKGIEIRALIPNLVISSVLEYFKNRKVDDNVSTFMFFAK HHHHHHHHCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHEEEEEEC DTIYMDDNLGMNFASEKNIILASNNLDVGSNVKINVSGKSGELVDNSMYGKNGEDGRDAG CEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC NIYLYIKEEIRNYRLTLIANGGNGSKGIDGENGETGASGSNGADAGYTSYFHGQMFKGYF CEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH EKGTSGKKGEKGGAGGNAGRGGNAGKKGNIYFISDSEEQKNRIINHCDITVKDGEAGPNG HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCHHHCEEEEECCCCCCCC RPGLGGYGGSGGYHGYNTLSFSPSGIDKTVYYTGYFTSWDYKLDSIIKYHIEFSGGSWNE CCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCC GKTGPAREYAEYGDRGDNGGFNAPNTKLSTAVSKVEENLIKEKYQGYCSEI CCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PENNNQLLEEITLLLNEGKVAINKAENQNLILILGGTGCGKSTAINYLAGCVMMEVEDE CCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHCEEEEEEECC DTGISYIDCLDPVAEIGSGAVSQTLYPNIVNMRKPIEGMDAKLCDTAGFSDNRGVAHDIS CCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCHHHHH AAVSLGEVFKNSASICAVIVLIPEADILDSRLTKVLDLFQQLNMCLHKENFKGSITFFIS HHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE KSFLGRTEKQIYNVIKRKYEQLCENLDSNIEEKAWLFEELLKDNGKNIHLCKPLASDERE HHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH GLLKQVLELDEVKDKTSAFQYPISADARLVLDTLIKEIQNNIVSSLEDYVKAYTEDFINI HHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGSITMIQEITKYDEVVKVFKNWLESTTSLTIERFINVLAKQSGLFLQDSCMKLQNKIKG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHCC NLDIIDALSKYTEHGTGEILLPSVHMEFIIEKASKKIMEQNFIIIRKNLEKVLVSYEVQK CHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHH QVFTLPNREKLMEVANKKDYVYSVSDFNSILTNVTVTQNEELEDSITRLSAYGEEGNEII HHHCCCCHHHHHHHHCCCCEEEEHHHHHHHHHCEEECCCCHHHHHHHHHHHCCCCHHHHH REFIGKYILNPFIVKTININDKKGIEIRALIPNLVISSVLEYFKNRKVDDNVSTFMFFAK HHHHHHHHCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHEEEEEEC DTIYMDDNLGMNFASEKNIILASNNLDVGSNVKINVSGKSGELVDNSMYGKNGEDGRDAG CEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC NIYLYIKEEIRNYRLTLIANGGNGSKGIDGENGETGASGSNGADAGYTSYFHGQMFKGYF CEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH EKGTSGKKGEKGGAGGNAGRGGNAGKKGNIYFISDSEEQKNRIINHCDITVKDGEAGPNG HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCHHHCEEEEECCCCCCCC RPGLGGYGGSGGYHGYNTLSFSPSGIDKTVYYTGYFTSWDYKLDSIIKYHIEFSGGSWNE CCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCC GKTGPAREYAEYGDRGDNGGFNAPNTKLSTAVSKVEENLIKEKYQGYCSEI CCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA