| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is 126698104
Identifier: 126698104
GI number: 126698104
Start: 627357
End: 628643
Strand: Direct
Name: 126698104
Synonym: CD0523
Alternate gene names: NA
Gene position: 627357-628643 (Clockwise)
Preceding gene: 126698103
Following gene: 126698110
Centisome position: 14.62
GC content: 29.84
Gene sequence:
>1287_bases ATGATAGTGGGTATTATAGGTCCTTCAGACTCTGGGTTTAAGATAAAGGATGATTTAAAACAGATAGACAGTGATTTAAA GACTAAAATATATGTAAGAGAAAAAGTAGTAGATACAATAGAAGTTATTTCTAAATGTGAAGACGAATGTGATGCTATTA TATTTACAGGATGTGCAGTTTATGAATTTATAAAATCTAAGTATGAGATAAGTAAGCCACATTCATTTGTACCGAGAAGT GGGACGAGTATAATGAAGGCATTTTGGGCAATAAAAAGTGCAAATATAAAATTAGATAAATTCAGTATAGATGTAGTTGA TAGATATGTTGTGGAAGATGCACTTAAAGAATTTGATATTAAAGCAACGAGTGTATTTTGTAATCCATTTTCTTTGGAAG TAGGAGAGTCTGAACTTGTAGAATGGCATATAAAATTATTTGAAGAAAATAAGACGGATATAATGTTGACTGGTTTTGGT GCAGTATATAATGAATTAAAAGAAAGAGGCTATCCTGTATTTCGTTTACAAGCTACTATACAATTAATCAAAGAAAGTTA TGACAAGGTAAAGAGTGAATATGCTCTAAGTAAGGCAAGATTTTCCCAAATTGCTGTTGAAATATTGAGTTTAATAGATT ATAAAGAGAAGATAGATAACTATTATTCTGACATGATAAAAAAATCAGATATGGATAAGCTTGTAGTAAACTATGTAAGA AGCATTCAAGGTTCCTTATTTTTACTTGGAAGAAATGATTATGTTGTATTTGTTCATAAAGGGGTAGCTGATAATGAGTA TAATTATGATAAGCTATTCAATCTAAAGAGAGAGATAAAAGACATGGGCTTTTCTCTTAGTATAGGAATTGGTACTGGAG TAACTGCGTATCAGGCTGAAAATAATGCACATAAAGCATTAAGACACTCCATAGATTCAAAAGAAATTGGTATATATTTG GTAGATGAAGATGAAAACATAAGAGGACCTTTAGCTTCCGAAAATGAATTAAATTATTCTTTGATGCTATCTGATGAAAA GGTAATCGAAATATCTAAAAAGACTGGAATGAGTTGTGAGTCAGTTGCAAAAATTATTGCTATAAATGAGAATAGAAAAA GTAAGATTTATGATTCAAAAGAGTTAGCAGAGTATCTAAATGTAAGTGAAAGAAGTGCAAGACGTATATTAAATAAAATA GTAAATGCAGGTTTAGGTCGAATATGTGCAAAAGAGACTAGTATTGGTGGAGGAAGACCAAAAAATATTACTGAAATACT GTTTTAA
Upstream 100 bases:
>100_bases TAGGTAGGATGGAGTAGTTCAAAATAATTAAATAGAAGTAGAAAATAGTGAGGATATAATTTTTAAAAAGTATAATATTT ATGGATTAGGAGCGAAGTTT
Downstream 100 bases:
>100_bases GATATTTTATAAAACTGTATAAATCATTATATTGTATAAAATTCTACAACAAATTACTATATAAAGTATTAAAGCTTATT ATGAAAAAAATTAGAACAAA
Product: transcriptional regulator
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MIVGIIGPSDSGFKIKDDLKQIDSDLKTKIYVREKVVDTIEVISKCEDECDAIIFTGCAVYEFIKSKYEISKPHSFVPRS GTSIMKAFWAIKSANIKLDKFSIDVVDRYVVEDALKEFDIKATSVFCNPFSLEVGESELVEWHIKLFEENKTDIMLTGFG AVYNELKERGYPVFRLQATIQLIKESYDKVKSEYALSKARFSQIAVEILSLIDYKEKIDNYYSDMIKKSDMDKLVVNYVR SIQGSLFLLGRNDYVVFVHKGVADNEYNYDKLFNLKREIKDMGFSLSIGIGTGVTAYQAENNAHKALRHSIDSKEIGIYL VDEDENIRGPLASENELNYSLMLSDEKVIEISKKTGMSCESVAKIIAINENRKSKIYDSKELAEYLNVSERSARRILNKI VNAGLGRICAKETSIGGGRPKNITEILF
Sequences:
>Translated_428_residues MIVGIIGPSDSGFKIKDDLKQIDSDLKTKIYVREKVVDTIEVISKCEDECDAIIFTGCAVYEFIKSKYEISKPHSFVPRS GTSIMKAFWAIKSANIKLDKFSIDVVDRYVVEDALKEFDIKATSVFCNPFSLEVGESELVEWHIKLFEENKTDIMLTGFG AVYNELKERGYPVFRLQATIQLIKESYDKVKSEYALSKARFSQIAVEILSLIDYKEKIDNYYSDMIKKSDMDKLVVNYVR SIQGSLFLLGRNDYVVFVHKGVADNEYNYDKLFNLKREIKDMGFSLSIGIGTGVTAYQAENNAHKALRHSIDSKEIGIYL VDEDENIRGPLASENELNYSLMLSDEKVIEISKKTGMSCESVAKIIAINENRKSKIYDSKELAEYLNVSERSARRILNKI VNAGLGRICAKETSIGGGRPKNITEILF >Mature_428_residues MIVGIIGPSDSGFKIKDDLKQIDSDLKTKIYVREKVVDTIEVISKCEDECDAIIFTGCAVYEFIKSKYEISKPHSFVPRS GTSIMKAFWAIKSANIKLDKFSIDVVDRYVVEDALKEFDIKATSVFCNPFSLEVGESELVEWHIKLFEENKTDIMLTGFG AVYNELKERGYPVFRLQATIQLIKESYDKVKSEYALSKARFSQIAVEILSLIDYKEKIDNYYSDMIKKSDMDKLVVNYVR SIQGSLFLLGRNDYVVFVHKGVADNEYNYDKLFNLKREIKDMGFSLSIGIGTGVTAYQAENNAHKALRHSIDSKEIGIYL VDEDENIRGPLASENELNYSLMLSDEKVIEISKKTGMSCESVAKIIAINENRKSKIYDSKELAEYLNVSERSARRILNKI VNAGLGRICAKETSIGGGRPKNITEILF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48510; Mature: 48510
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVGIIGPSDSGFKIKDDLKQIDSDLKTKIYVREKVVDTIEVISKCEDECDAIIFTGCAV CEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHH YEFIKSKYEISKPHSFVPRSGTSIMKAFWAIKSANIKLDKFSIDVVDRYVVEDALKEFDI HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHCCC KATSVFCNPFSLEVGESELVEWHIKLFEENKTDIMLTGFGAVYNELKERGYPVFRLQATI EEEEEEECCCEECCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCEEEHHHHH QLIKESYDKVKSEYALSKARFSQIAVEILSLIDYKEKIDNYYSDMIKKSDMDKLVVNYVR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH SIQGSLFLLGRNDYVVFVHKGVADNEYNYDKLFNLKREIKDMGFSLSIGIGTGVTAYQAE HCCCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEECC NNAHKALRHSIDSKEIGIYLVDEDENIRGPLASENELNYSLMLSDEKVIEISKKTGMSCE CCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEHHHCCCCHH SVAKIIAINENRKSKIYDSKELAEYLNVSERSARRILNKIVNAGLGRICAKETSIGGGRP HHHEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCC KNITEILF CCHHHHCC >Mature Secondary Structure MIVGIIGPSDSGFKIKDDLKQIDSDLKTKIYVREKVVDTIEVISKCEDECDAIIFTGCAV CEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHH YEFIKSKYEISKPHSFVPRSGTSIMKAFWAIKSANIKLDKFSIDVVDRYVVEDALKEFDI HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHCCC KATSVFCNPFSLEVGESELVEWHIKLFEENKTDIMLTGFGAVYNELKERGYPVFRLQATI EEEEEEECCCEECCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCEEEHHHHH QLIKESYDKVKSEYALSKARFSQIAVEILSLIDYKEKIDNYYSDMIKKSDMDKLVVNYVR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH SIQGSLFLLGRNDYVVFVHKGVADNEYNYDKLFNLKREIKDMGFSLSIGIGTGVTAYQAE HCCCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEECC NNAHKALRHSIDSKEIGIYLVDEDENIRGPLASENELNYSLMLSDEKVIEISKKTGMSCE CCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEHHHCCCCHH SVAKIIAINENRKSKIYDSKELAEYLNVSERSARRILNKIVNAGLGRICAKETSIGGGRP HHHEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCC KNITEILF CCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA