| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is orf15 [H]
Identifier: 126698081
GI number: 126698081
Start: 593007
End: 595175
Strand: Direct
Name: orf15 [H]
Synonym: CD0503
Alternate gene names: 126698081
Gene position: 593007-595175 (Clockwise)
Preceding gene: 126698080
Following gene: 126698082
Centisome position: 13.82
GC content: 41.36
Gene sequence:
>2169_bases ATGATGGTACAGAAATTAAAATCAAACTGGACTCTGAAGCGTCTAAATAAAGTGGCAATGACAGTGGTTTTATCACTCGT GATTGCCATTTTTCTTTTAGCAATGTTGGGAACAGTGGTTCAAGCTGCGGGCTTGGTAGATGATACGGTCAATGTAGCAA ATGAATACAGCCGATACCCACTTGAAAACTATCAACTGGATTTTTATGTTGATAATAGCTGGGGCTGGCTACCGTGGAAC TGGTCGGACGGGATTGGAAAACAGGTCATGTATGGACTATATGCTATTACCAATTTTATTTGGACAATCAGTCTTTATGT TTCCAATGCGACTGGCTACTTAGTTCAAGAAGCCTATTCCCTCGACTTCATTTCTGCTACAGCAGATTCCATTGGCAAGA ATATGCAGACCCTTGCAGGAGTTACGCCTAGCGGACTATCAACAGAGGGATTCTATGTTGGATTCCTCTTACTCTTGATT TTGGTTCTTGGGGTTTATGTTGTCTATACAGGACTGATAAAAAGAGAAACTACAAAAGCGATTCATGCCATTGTGAACTT TGTCATGGTATTTATCCTATCAGCTTCCTTTATTGCCTATGCTCCCGACTACATTAAAAAAATCAATGATTTTTCATCAG ACATCAGTCAAGCCAGCTTATCATTAGGAACGAAAATCGTCATGCCCCATTCAGACAGTCAAGGAAATGACAGTGTGGAC TTGATACGTGACAGCCTATTTTCCATACAGGTTCAACAACCGTGGCTACTGCTTCAATACAACAGTTCAGACATTGAAAG TATTGGTGCTGACCGTGTGGAAAGTCTACTTTCAACCAGTCCAGACAGTAATAATGGAGAAGACAGAGAAAAAATTGTAG CAGAAGAAATCGAAGACAGAAACAATGTGAACATGACGATTACAAAAACTATTAACCGTTTGGGTACAGTCTTCTTTCTC TTTGTATTCAATATCGGGATTTCTATATTCGTATTCCTACTAACAGGAATCATGATTTTCTCGCAGGTACTTTTTATCAT CTATGCCATGTTTCTACCTGTTAGCTTTATTTTAAGCATGATTCCGTCCTTTGATGGTATGTCAAAACGAGCCATTATCA AACTCTTTAATACCATTTTGACACGAGCTGGAATCACGCTGATTATTACGACAGCCTTTAGTATTTCAACCATGCTCTAT ACCTTATCGGCTGGTTATCCGTTCTTTTTGATTGCCTTTTTACAGATTGTGACCTTTGCAGGAATCTACTTCAAACTGAG CGATTTAATGAGTATGTTTTCGCTTCAAAGCAACGATTCTCAAAGTGTGGGAAGTCGTGTGATGAGAAAACCTCGTATGC TTATGCACGCTCATATGCACCGCCTACAGCGTAAACTTGGACGCTCCATGACAGCTTTAGGTGCTGGCTCTGCCATTGCC AGTGCTACAGGAAAACAAGGACAGTCGGGTAGTTCTGGTAGGACACAAGCAGATCACACCCGTCCAGACGGACAGGAAAA ATCAACACTTGGAAAACGTATCGGACAAACAATCGGAGCAGTTGCTGATACCAAAGATAAAATCGTTGATTCTGCTGGTA ATCTCAAAGAACAGGTTAAGGATATTCCGACCAATGCAAGATATGCAGTGTATCAAGGAAAATCCAAAGCAAAAGAAAAT GTTCGTGACCTAACTTCCAGTATTTCTCAAACCAGAGCAGACAGAGCCAGCGGACGCAAGGAACAGCAGGAACAAAGACG CAAAACCATTGCAGAGCGTCGCTCTGAAATGGAACAGGTCAAACAGAAAAAACAGCCAGCTTCTTCCGTTCATGAAAGAC CAGCTACTAAGCAAGAACAATCTCATGATGGACAGACCGCAAAACAATCTTCTATTCAGACTTCACGCATGGAATCTCAA CAAGCCAAACAGGAGCGTCCAGCAGTTAAGTCCGATTCTTTAAGTTTAAAAGCGGAACGACAAAACCGTACTACACAAGA AAGAACAGTTCAAAAGCCAGCAACTTCAACTACACCAGCAGACAGAGCTTCACAACGTCCAGTCACAAAAGAGCGTCCGT CTACTGTTCAAAGAGTTCAAAGCCAAAACCTTAGAAATAGACCACCAATAAAATCCGCCACTATCAAGAAAGGCAGTAAG AAACCATGA
Upstream 100 bases:
>100_bases GTGATTTATATGGTCGTGTCGGTGTGATACAGTTCCACCCAGTCTTTGAAGAATTACTTCATGCTTTTGATACCAGACCG CCTGTGAGAAAAGAGGTGTA
Downstream 100 bases:
>100_bases AACTGAAAGCTTTAGTGATTGGTGGTTCTGGGCTATTCTTGATGGTCTTCTCACTACTTCTGTTTGTTGCCATTTTATTT TCAGATGAACAAGATGGCGG
Product: conjugative transposon membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 722; Mature: 722
Protein sequence:
>722_residues MMVQKLKSNWTLKRLNKVAMTVVLSLVIAIFLLAMLGTVVQAAGLVDDTVNVANEYSRYPLENYQLDFYVDNSWGWLPWN WSDGIGKQVMYGLYAITNFIWTISLYVSNATGYLVQEAYSLDFISATADSIGKNMQTLAGVTPSGLSTEGFYVGFLLLLI LVLGVYVVYTGLIKRETTKAIHAIVNFVMVFILSASFIAYAPDYIKKINDFSSDISQASLSLGTKIVMPHSDSQGNDSVD LIRDSLFSIQVQQPWLLLQYNSSDIESIGADRVESLLSTSPDSNNGEDREKIVAEEIEDRNNVNMTITKTINRLGTVFFL FVFNIGISIFVFLLTGIMIFSQVLFIIYAMFLPVSFILSMIPSFDGMSKRAIIKLFNTILTRAGITLIITTAFSISTMLY TLSAGYPFFLIAFLQIVTFAGIYFKLSDLMSMFSLQSNDSQSVGSRVMRKPRMLMHAHMHRLQRKLGRSMTALGAGSAIA SATGKQGQSGSSGRTQADHTRPDGQEKSTLGKRIGQTIGAVADTKDKIVDSAGNLKEQVKDIPTNARYAVYQGKSKAKEN VRDLTSSISQTRADRASGRKEQQEQRRKTIAERRSEMEQVKQKKQPASSVHERPATKQEQSHDGQTAKQSSIQTSRMESQ QAKQERPAVKSDSLSLKAERQNRTTQERTVQKPATSTTPADRASQRPVTKERPSTVQRVQSQNLRNRPPIKSATIKKGSK KP
Sequences:
>Translated_722_residues MMVQKLKSNWTLKRLNKVAMTVVLSLVIAIFLLAMLGTVVQAAGLVDDTVNVANEYSRYPLENYQLDFYVDNSWGWLPWN WSDGIGKQVMYGLYAITNFIWTISLYVSNATGYLVQEAYSLDFISATADSIGKNMQTLAGVTPSGLSTEGFYVGFLLLLI LVLGVYVVYTGLIKRETTKAIHAIVNFVMVFILSASFIAYAPDYIKKINDFSSDISQASLSLGTKIVMPHSDSQGNDSVD LIRDSLFSIQVQQPWLLLQYNSSDIESIGADRVESLLSTSPDSNNGEDREKIVAEEIEDRNNVNMTITKTINRLGTVFFL FVFNIGISIFVFLLTGIMIFSQVLFIIYAMFLPVSFILSMIPSFDGMSKRAIIKLFNTILTRAGITLIITTAFSISTMLY TLSAGYPFFLIAFLQIVTFAGIYFKLSDLMSMFSLQSNDSQSVGSRVMRKPRMLMHAHMHRLQRKLGRSMTALGAGSAIA SATGKQGQSGSSGRTQADHTRPDGQEKSTLGKRIGQTIGAVADTKDKIVDSAGNLKEQVKDIPTNARYAVYQGKSKAKEN VRDLTSSISQTRADRASGRKEQQEQRRKTIAERRSEMEQVKQKKQPASSVHERPATKQEQSHDGQTAKQSSIQTSRMESQ QAKQERPAVKSDSLSLKAERQNRTTQERTVQKPATSTTPADRASQRPVTKERPSTVQRVQSQNLRNRPPIKSATIKKGSK KP >Mature_722_residues MMVQKLKSNWTLKRLNKVAMTVVLSLVIAIFLLAMLGTVVQAAGLVDDTVNVANEYSRYPLENYQLDFYVDNSWGWLPWN WSDGIGKQVMYGLYAITNFIWTISLYVSNATGYLVQEAYSLDFISATADSIGKNMQTLAGVTPSGLSTEGFYVGFLLLLI LVLGVYVVYTGLIKRETTKAIHAIVNFVMVFILSASFIAYAPDYIKKINDFSSDISQASLSLGTKIVMPHSDSQGNDSVD LIRDSLFSIQVQQPWLLLQYNSSDIESIGADRVESLLSTSPDSNNGEDREKIVAEEIEDRNNVNMTITKTINRLGTVFFL FVFNIGISIFVFLLTGIMIFSQVLFIIYAMFLPVSFILSMIPSFDGMSKRAIIKLFNTILTRAGITLIITTAFSISTMLY TLSAGYPFFLIAFLQIVTFAGIYFKLSDLMSMFSLQSNDSQSVGSRVMRKPRMLMHAHMHRLQRKLGRSMTALGAGSAIA SATGKQGQSGSSGRTQADHTRPDGQEKSTLGKRIGQTIGAVADTKDKIVDSAGNLKEQVKDIPTNARYAVYQGKSKAKEN VRDLTSSISQTRADRASGRKEQQEQRRKTIAERRSEMEQVKQKKQPASSVHERPATKQEQSHDGQTAKQSSIQTSRMESQ QAKQERPAVKSDSLSLKAERQNRTTQERTVQKPATSTTPADRASQRPVTKERPSTVQRVQSQNLRNRPPIKSATIKKGSK KP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80238; Mature: 80238
Theoretical pI: Translated: 10.30; Mature: 10.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMVQKLKSNWTLKRLNKVAMTVVLSLVIAIFLLAMLGTVVQAAGLVDDTVNVANEYSRYP CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC LENYQLDFYVDNSWGWLPWNWSDGIGKQVMYGLYAITNFIWTISLYVSNATGYLVQEAYS CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LDFISATADSIGKNMQTLAGVTPSGLSTEGFYVGFLLLLILVLGVYVVYTGLIKRETTKA HHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IHAIVNFVMVFILSASFIAYAPDYIKKINDFSSDISQASLSLGTKIVMPHSDSQGNDSVD HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHH LIRDSLFSIQVQQPWLLLQYNSSDIESIGADRVESLLSTSPDSNNGEDREKIVAEEIEDR HHHHHHHHEEECCCEEEEEECCCCHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC NNVNMTITKTINRLGTVFFLFVFNIGISIFVFLLTGIMIFSQVLFIIYAMFLPVSFILSM CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IPSFDGMSKRAIIKLFNTILTRAGITLIITTAFSISTMLYTLSAGYPFFLIAFLQIVTFA HCCCCCCHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH GIYFKLSDLMSMFSLQSNDSQSVGSRVMRKPRMLMHAHMHRLQRKLGRSMTALGAGSAIA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHH SATGKQGQSGSSGRTQADHTRPDGQEKSTLGKRIGQTIGAVADTKDKIVDSAGNLKEQVK HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHH DIPTNARYAVYQGKSKAKENVRDLTSSISQTRADRASGRKEQQEQRRKTIAERRSEMEQV HCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH KQKKQPASSVHERPATKQEQSHDGQTAKQSSIQTSRMESQQAKQERPAVKSDSLSLKAER HHHCCCHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHH QNRTTQERTVQKPATSTTPADRASQRPVTKERPSTVQRVQSQNLRNRPPIKSATIKKGSK HCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHCCCCC KP CC >Mature Secondary Structure MMVQKLKSNWTLKRLNKVAMTVVLSLVIAIFLLAMLGTVVQAAGLVDDTVNVANEYSRYP CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC LENYQLDFYVDNSWGWLPWNWSDGIGKQVMYGLYAITNFIWTISLYVSNATGYLVQEAYS CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LDFISATADSIGKNMQTLAGVTPSGLSTEGFYVGFLLLLILVLGVYVVYTGLIKRETTKA HHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IHAIVNFVMVFILSASFIAYAPDYIKKINDFSSDISQASLSLGTKIVMPHSDSQGNDSVD HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHH LIRDSLFSIQVQQPWLLLQYNSSDIESIGADRVESLLSTSPDSNNGEDREKIVAEEIEDR HHHHHHHHEEECCCEEEEEECCCCHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC NNVNMTITKTINRLGTVFFLFVFNIGISIFVFLLTGIMIFSQVLFIIYAMFLPVSFILSM CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IPSFDGMSKRAIIKLFNTILTRAGITLIITTAFSISTMLYTLSAGYPFFLIAFLQIVTFA HCCCCCCHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH GIYFKLSDLMSMFSLQSNDSQSVGSRVMRKPRMLMHAHMHRLQRKLGRSMTALGAGSAIA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHH SATGKQGQSGSSGRTQADHTRPDGQEKSTLGKRIGQTIGAVADTKDKIVDSAGNLKEQVK HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHH DIPTNARYAVYQGKSKAKENVRDLTSSISQTRADRASGRKEQQEQRRKTIAERRSEMEQV HCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH KQKKQPASSVHERPATKQEQSHDGQTAKQSSIQTSRMESQQAKQERPAVKSDSLSLKAER HHHCCCHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHH QNRTTQERTVQKPATSTTPADRASQRPVTKERPSTVQRVQSQNLRNRPPIKSATIKKGSK HCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHCCCCC KP CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]