| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is spaE
Identifier: 126698056
GI number: 126698056
Start: 567878
End: 568648
Strand: Direct
Name: spaE
Synonym: CD0479
Alternate gene names: NA
Gene position: 567878-568648 (Clockwise)
Preceding gene: 126698055
Following gene: 126698057
Centisome position: 13.24
GC content: 36.45
Gene sequence:
>771_bases ATGAATGCTTTACAATCAGAACTTTTAAAGTATAAAAGAACATTTATGGGTAAACTTATTGTTTTTTTCCCAGTGTCTTT TGCAGCATATGCATTTATAATGCAATCAACACTCATGCAAAATCCATTATCTCAAACAACTTCTTGGGCGTGGCAAAGTC TTTTAGCATTAATTTTTAACTGGTGGTCATTTTTATTTCTGCCTATTGGATTTGCATTGTTTGCTACTTTGGTAGCTTTC CAGGAAAAAAAAGCTGGAAATTATCGTGCTTTACGTACACACAATGTGTCTCCTATGACACTTTGGATTAATAAAGTTAT AGCTATGGCAGTCTACAGTTTTATTTCAACGCTAGTTTTAATAGTCGTAACAATTATAACTGGTTTAATATTGAAAGCTG GTCCAGTTCCTTTTGGACAGATTATAGGGGCAAGTATTGTATGCTGGGTTGTTTCTCTTGCTATACTTCCACTTCAGCTA TGGCTAGCTACATGGAAAGGTATGTTCCTAAGTATGGGAGTTGGAGCTTTAGGTATGATATTTGGTGTCCTTGCTGCGAC AAAACCATTTTGGATTGCAGTACCTTGGAGTTGGGCAGTTAGAATGGTATGCCCAATCATCAACATACATCCTAACGGTA CTATATTAGAAGCTGGAGACCCACTTTTGAATACTTCAGTGATTCCTATTGGGATTGTTGTTTCTTTGGTTGTGTTTATA GTATTAACAGCACTTACTGCAGCTTGGTTCAATAGGAGGGATGACAAATGA
Upstream 100 bases:
>100_bases TTATAAATGGAGGACGACTATTATTTCAAGGAATGCCTGACCCTAATGAAAATCTAGAAGAATTTTTTACAGATGTTATT CTTAAAGGAGGACAAAACAG
Downstream 100 bases:
>100_bases TAAAGCTATTATCATCAGAATGGCTTCGAGCAAAGAGGACAGCTGTCCAGTGGCTTACTCTTTTTATGCCTATTATTTTT TCATTATGTGTGGTTTTTTA
Product: lantibiotic ABC transporter permease
Products: NA
Alternate protein names: Bacteriocin ABC Transporter Permease Protein Subunit; Lantibiotic Permease Protein SpaE/MutE; Permease; Lantibiotic ABC Transporter Permease Protein; Transporter Protein; Bacteriocin ABC Transporter Permease Subunit; Bacteriocin Abc Transporter Permease Subunit; Antibiotic ABC Transporter; Lantibiotic PermeaE/MutE; Mutacin ABC Transporter Protein MutE; LOW QUALITY PROTEIN Lantibiotic ABC Transporter; Subtilin ABC Transporter Permease; Antibiotic Permease Protein SpaE/MutE
Number of amino acids: Translated: 256; Mature: 256
Protein sequence:
>256_residues MNALQSELLKYKRTFMGKLIVFFPVSFAAYAFIMQSTLMQNPLSQTTSWAWQSLLALIFNWWSFLFLPIGFALFATLVAF QEKKAGNYRALRTHNVSPMTLWINKVIAMAVYSFISTLVLIVVTIITGLILKAGPVPFGQIIGASIVCWVVSLAILPLQL WLATWKGMFLSMGVGALGMIFGVLAATKPFWIAVPWSWAVRMVCPIINIHPNGTILEAGDPLLNTSVIPIGIVVSLVVFI VLTALTAAWFNRRDDK
Sequences:
>Translated_256_residues MNALQSELLKYKRTFMGKLIVFFPVSFAAYAFIMQSTLMQNPLSQTTSWAWQSLLALIFNWWSFLFLPIGFALFATLVAF QEKKAGNYRALRTHNVSPMTLWINKVIAMAVYSFISTLVLIVVTIITGLILKAGPVPFGQIIGASIVCWVVSLAILPLQL WLATWKGMFLSMGVGALGMIFGVLAATKPFWIAVPWSWAVRMVCPIINIHPNGTILEAGDPLLNTSVIPIGIVVSLVVFI VLTALTAAWFNRRDDK >Mature_256_residues MNALQSELLKYKRTFMGKLIVFFPVSFAAYAFIMQSTLMQNPLSQTTSWAWQSLLALIFNWWSFLFLPIGFALFATLVAF QEKKAGNYRALRTHNVSPMTLWINKVIAMAVYSFISTLVLIVVTIITGLILKAGPVPFGQIIGASIVCWVVSLAILPLQL WLATWKGMFLSMGVGALGMIFGVLAATKPFWIAVPWSWAVRMVCPIINIHPNGTILEAGDPLLNTSVIPIGIVVSLVVFI VLTALTAAWFNRRDDK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28385; Mature: 28385
Theoretical pI: Translated: 10.61; Mature: 10.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNALQSELLKYKRTFMGKLIVFFPVSFAAYAFIMQSTLMQNPLSQTTSWAWQSLLALIFN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH WWSFLFLPIGFALFATLVAFQEKKAGNYRALRTHNVSPMTLWINKVIAMAVYSFISTLVL HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH IVVTIITGLILKAGPVPFGQIIGASIVCWVVSLAILPLQLWLATWKGMFLSMGVGALGMI HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGVLAATKPFWIAVPWSWAVRMVCPIINIHPNGTILEAGDPLLNTSVIPIGIVVSLVVFI HHHHHCCCCEEEEECHHHHHHHHHHHHEECCCCCEEECCCCHHCCCHHHHHHHHHHHHHH VLTALTAAWFNRRDDK HHHHHHHHHHHCCCCC >Mature Secondary Structure MNALQSELLKYKRTFMGKLIVFFPVSFAAYAFIMQSTLMQNPLSQTTSWAWQSLLALIFN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH WWSFLFLPIGFALFATLVAFQEKKAGNYRALRTHNVSPMTLWINKVIAMAVYSFISTLVL HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH IVVTIITGLILKAGPVPFGQIIGASIVCWVVSLAILPLQLWLATWKGMFLSMGVGALGMI HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGVLAATKPFWIAVPWSWAVRMVCPIINIHPNGTILEAGDPLLNTSVIPIGIVVSLVVFI HHHHHCCCCEEEEECHHHHHHHHHHHHEECCCCCEEECCCCHHCCCHHHHHHHHHHHHHH VLTALTAAWFNRRDDK HHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA