| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698054
Identifier: 126698054
GI number: 126698054
Start: 566410
End: 566922
Strand: Direct
Name: 126698054
Synonym: CD0477
Alternate gene names: NA
Gene position: 566410-566922 (Clockwise)
Preceding gene: 126698050
Following gene: 126698055
Centisome position: 13.2
GC content: 24.37
Gene sequence:
>513_bases TTGAAAAAAATATCTCAAGAAAAAATAAGTACACATATCCAAGAAGTACCACAGGAAAAAATTGAACAGTGGAAATCTTT ATATGAAAAATATAAAAGTATTTTAAAAGTAAATTCTAAGTCTGTTTTAGAAATAATAGAGTTTTTAAAGCGAAAATATG TAATAGTAGAGGAAACTTCAGAGGAATTTAAACATGTAGTTATCAATAATATTAAGTTAAACAAGCCTTTTTCACAAAAG ATTTCCAGTGATAAAGAATTAAAACCTATTGTATTTACAATTCCAAATGAAGGAAATGCAAAAAAATTGTACGATACTCA AGAGGAAACTTATAGTGGCTGTAAGATTATTGTAGGTATGGAATTTGAAACAGGTTATGTTTTTGTAGAAGGTAGTGATG AGCTTAATGATGAAATAACTTCTTTTAAAGGATTAGATAAATATGATATAAATAATTATTATTTAGTAGCAAACTATATT AGATGTCTAAAGAAATATAAATTAATAGATTAG
Upstream 100 bases:
>100_bases AAGACATATTTAAGTATGCAAAATTCTATTAAGTAGGAACCTTGTAACTTTAGTCATGTGAGATTTATAAGGATATTTAA GTATTGAAAGGAGAGTTTAA
Downstream 100 bases:
>100_bases TGTTTGATTAATAAATTAGTGTTTGATTTAAGGATTATAGAGTAAATTTGAAGTTAGTGTGATAATGAAACTAAGCTTAA ATCTAATATAACTGTAAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 170; Mature: 170
Protein sequence:
>170_residues MKKISQEKISTHIQEVPQEKIEQWKSLYEKYKSILKVNSKSVLEIIEFLKRKYVIVEETSEEFKHVVINNIKLNKPFSQK ISSDKELKPIVFTIPNEGNAKKLYDTQEETYSGCKIIVGMEFETGYVFVEGSDELNDEITSFKGLDKYDINNYYLVANYI RCLKKYKLID
Sequences:
>Translated_170_residues MKKISQEKISTHIQEVPQEKIEQWKSLYEKYKSILKVNSKSVLEIIEFLKRKYVIVEETSEEFKHVVINNIKLNKPFSQK ISSDKELKPIVFTIPNEGNAKKLYDTQEETYSGCKIIVGMEFETGYVFVEGSDELNDEITSFKGLDKYDINNYYLVANYI RCLKKYKLID >Mature_170_residues MKKISQEKISTHIQEVPQEKIEQWKSLYEKYKSILKVNSKSVLEIIEFLKRKYVIVEETSEEFKHVVINNIKLNKPFSQK ISSDKELKPIVFTIPNEGNAKKLYDTQEETYSGCKIIVGMEFETGYVFVEGSDELNDEITSFKGLDKYDINNYYLVANYI RCLKKYKLID
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19997; Mature: 19997
Theoretical pI: Translated: 7.40; Mature: 7.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKISQEKISTHIQEVPQEKIEQWKSLYEKYKSILKVNSKSVLEIIEFLKRKYVIVEETS CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCEEEEECCH EEFKHVVINNIKLNKPFSQKISSDKELKPIVFTIPNEGNAKKLYDTQEETYSGCKIIVGM HHHHHHHHCCEECCCCHHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCEEEEEE EFETGYVFVEGSDELNDEITSFKGLDKYDINNYYLVANYIRCLKKYKLID EECCCEEEEECCCHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHCCCC >Mature Secondary Structure MKKISQEKISTHIQEVPQEKIEQWKSLYEKYKSILKVNSKSVLEIIEFLKRKYVIVEETS CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCEEEEECCH EEFKHVVINNIKLNKPFSQKISSDKELKPIVFTIPNEGNAKKLYDTQEETYSGCKIIVGM HHHHHHHHCCEECCCCHHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCEEEEEE EFETGYVFVEGSDELNDEITSFKGLDKYDINNYYLVANYIRCLKKYKLID EECCCEEEEECCCHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA