| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is malL [H]
Identifier: 126698044
GI number: 126698044
Start: 556528
End: 558192
Strand: Direct
Name: malL [H]
Synonym: CD0468
Alternate gene names: 126698044
Gene position: 556528-558192 (Clockwise)
Preceding gene: 126698043
Following gene: 126698045
Centisome position: 12.97
GC content: 29.79
Gene sequence:
>1665_bases ATGGAAAAGAAATGGTGGCAAAAAGAAATCGTTTATCAAATTTATCCAAGAAGCTTTCAAGATAGTAATAATGATGGAAT TGGAGATTTACAGGGAATTATTTCTCGTTTAGATTATTTAAAAGATTTAGGTATTACATCATTGTGGTTATGTCCAATTT TTAAATCACCTATGGACGATAATGGGTATGATATTAGTGATTATTTGGATATTGCAAGTGAATTTGGAAGTATGGAAGAT TTAAAAGAGTTAATTAAAGAAAGTAAAGATAGAGGAATCAAAATTATATTAGATTTAGTTCTTAATCATACAAGTGATGA ACATCCTTGGTTTCAAGAAGCATTAAAAAATCCAGAAAGTCCTTATCATGATTATTATATTTTTAAAAAAGGAAACGATT TACCAAATAACTGGAGGTCTGTTTTTGGTGGAAGTGTTTGGGAAAAGGTAGAGAATAGAGACGAATATTATTTTCATTCT TTTGGTAAAAAACAACCTGACCTTAATTGGGAAAATCCAATATTAAGAAGTGAACTTTACCAAATGATTAATACCTGGTC TCAAATGGGAGTGGCAGGATTTAGAGTTGATGCTATTACATTTATCAAAAAGAATTTAAGTTTTCAAAGTTTAGAAAGTG ATGGTGTTGATGGTCTTGTTAAATGTACAAAAACAGTTAGAAATCAGCCTGGAATAGAAAAAATGCTTTATGAATTAAAA GAAAATACGTTTAAAAAATATGATTGTATGACTGTTGCTGAAGCAGCAGGTATTAGCTATGACCAACTAGGTGATTTTAT TGGAGAAGATGGTTTCTTTTCAATGGTCTTTGACTTTAAACATGCTGACTTAGATGTTGCTTCTGGTAGTGAGTGGTTTA AAAGAATTTCATGGACAATTCCAGATTTAAGAAAATGCATTTTAGATAGTCAAATGTATGTTCAGGAACATGGATGGGCA GCTAATTTTATTGAAAATCATGACCAACCAAGAGCTACAACAAAGTATCTTTTGCAATACGAAAGGAATGATGATGCAGT AAAAATGTTGGGAGCAATGTATTTCTTTTTAAGAGGAACCCCATTTATTTATCAGGGACAGGAATTAGGAATGACAAATT TTAAAAGAGATACCATAAATGATTTTAATGATTTATCTAGCATTGACCAATACTATCGTTCAATAGATGAAAGTTACTCA GAAGAAGAAGCGTTAGAATTTGTGAATTTAAGAAGCCGAGATAATGCAAGAACGCCATTTCCATGGGCAGATAAAGAAAA TGCAGGTTTTTCAGATACAACACCATGGTTAAAGGTTATTGAAAATTATAAAGATATTAATGCACAGAGTCAGATTAACA ATTCAGAGAGTATTTTAGAATTTTATAAAAAGATGATAAAGTTGAGACAAGATAGTGAGTATTCTGATTGTTTGATTTAT GGTTCAATAGAACCTATTGATATAGAAAGTGATGATATTATTGCGTATAGAAGGCAATTAGATTTGGTAGTTATTGATTG TTATTATAATTTTTCTGATAAACCTGTAGAAATAAGAGTAGAAGAAAAATATGATATTGTATTCCAAAATTTAGATGATA TAAATCTATTAAATAAAACAGTGCGTTTGAAACCATTTCATGCAGTATTATTGAAAGTGAGGTAG
Upstream 100 bases:
>100_bases CAACTTAAAGATATAGCGACATCTATATGTGAGGACATATTCGATAATGGAATTTATAAAGAATTAAAAAGAAGAAATAT CATATAAAAAGGAGTAATTT
Downstream 100 bases:
>100_bases AAAAATGAATAAATATAATAAAATAGCAAATGAGCTTATTAAAATTATTGGTGAAGATAATATTATTTCTATTACACATT GTGCCACAAGATTAAGAGTG
Product: oligo-1,6-glucosidase
Products: NA
Alternate protein names: Dextrin 6-alpha-D-glucanohydrolase; Oligosaccharide alpha-1,6-glucosidase; Sucrase-isomaltase; Isomaltase [H]
Number of amino acids: Translated: 554; Mature: 554
Protein sequence:
>554_residues MEKKWWQKEIVYQIYPRSFQDSNNDGIGDLQGIISRLDYLKDLGITSLWLCPIFKSPMDDNGYDISDYLDIASEFGSMED LKELIKESKDRGIKIILDLVLNHTSDEHPWFQEALKNPESPYHDYYIFKKGNDLPNNWRSVFGGSVWEKVENRDEYYFHS FGKKQPDLNWENPILRSELYQMINTWSQMGVAGFRVDAITFIKKNLSFQSLESDGVDGLVKCTKTVRNQPGIEKMLYELK ENTFKKYDCMTVAEAAGISYDQLGDFIGEDGFFSMVFDFKHADLDVASGSEWFKRISWTIPDLRKCILDSQMYVQEHGWA ANFIENHDQPRATTKYLLQYERNDDAVKMLGAMYFFLRGTPFIYQGQELGMTNFKRDTINDFNDLSSIDQYYRSIDESYS EEEALEFVNLRSRDNARTPFPWADKENAGFSDTTPWLKVIENYKDINAQSQINNSESILEFYKKMIKLRQDSEYSDCLIY GSIEPIDIESDDIIAYRRQLDLVVIDCYYNFSDKPVEIRVEEKYDIVFQNLDDINLLNKTVRLKPFHAVLLKVR
Sequences:
>Translated_554_residues MEKKWWQKEIVYQIYPRSFQDSNNDGIGDLQGIISRLDYLKDLGITSLWLCPIFKSPMDDNGYDISDYLDIASEFGSMED LKELIKESKDRGIKIILDLVLNHTSDEHPWFQEALKNPESPYHDYYIFKKGNDLPNNWRSVFGGSVWEKVENRDEYYFHS FGKKQPDLNWENPILRSELYQMINTWSQMGVAGFRVDAITFIKKNLSFQSLESDGVDGLVKCTKTVRNQPGIEKMLYELK ENTFKKYDCMTVAEAAGISYDQLGDFIGEDGFFSMVFDFKHADLDVASGSEWFKRISWTIPDLRKCILDSQMYVQEHGWA ANFIENHDQPRATTKYLLQYERNDDAVKMLGAMYFFLRGTPFIYQGQELGMTNFKRDTINDFNDLSSIDQYYRSIDESYS EEEALEFVNLRSRDNARTPFPWADKENAGFSDTTPWLKVIENYKDINAQSQINNSESILEFYKKMIKLRQDSEYSDCLIY GSIEPIDIESDDIIAYRRQLDLVVIDCYYNFSDKPVEIRVEEKYDIVFQNLDDINLLNKTVRLKPFHAVLLKVR >Mature_554_residues MEKKWWQKEIVYQIYPRSFQDSNNDGIGDLQGIISRLDYLKDLGITSLWLCPIFKSPMDDNGYDISDYLDIASEFGSMED LKELIKESKDRGIKIILDLVLNHTSDEHPWFQEALKNPESPYHDYYIFKKGNDLPNNWRSVFGGSVWEKVENRDEYYFHS FGKKQPDLNWENPILRSELYQMINTWSQMGVAGFRVDAITFIKKNLSFQSLESDGVDGLVKCTKTVRNQPGIEKMLYELK ENTFKKYDCMTVAEAAGISYDQLGDFIGEDGFFSMVFDFKHADLDVASGSEWFKRISWTIPDLRKCILDSQMYVQEHGWA ANFIENHDQPRATTKYLLQYERNDDAVKMLGAMYFFLRGTPFIYQGQELGMTNFKRDTINDFNDLSSIDQYYRSIDESYS EEEALEFVNLRSRDNARTPFPWADKENAGFSDTTPWLKVIENYKDINAQSQINNSESILEFYKKMIKLRQDSEYSDCLIY GSIEPIDIESDDIIAYRRQLDLVVIDCYYNFSDKPVEIRVEEKYDIVFQNLDDINLLNKTVRLKPFHAVLLKVR
Specific function: Unknown
COG id: COG0366
COG function: function code G; Glycosidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Homo sapiens, GI187423904, Length=498, Percent_Identity=30.3212851405622, Blast_Score=219, Evalue=8e-57, Organism=Homo sapiens, GI61744475, Length=109, Percent_Identity=38.5321100917431, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI61744477, Length=109, Percent_Identity=38.5321100917431, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI65506891, Length=109, Percent_Identity=38.5321100917431, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI61744483, Length=109, Percent_Identity=38.5321100917431, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI61744479, Length=109, Percent_Identity=38.5321100917431, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI61744481, Length=109, Percent_Identity=38.5321100917431, Blast_Score=72, Evalue=2e-12, Organism=Escherichia coli, GI1790687, Length=555, Percent_Identity=35.8558558558559, Blast_Score=375, Evalue=1e-105, Organism=Escherichia coli, GI1786604, Length=108, Percent_Identity=41.6666666666667, Blast_Score=89, Evalue=7e-19, Organism=Caenorhabditis elegans, GI32565753, Length=570, Percent_Identity=22.9824561403509, Blast_Score=124, Evalue=1e-28, Organism=Caenorhabditis elegans, GI25147709, Length=204, Percent_Identity=29.9019607843137, Blast_Score=90, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6322245, Length=580, Percent_Identity=35, Blast_Score=340, Evalue=4e-94, Organism=Saccharomyces cerevisiae, GI6319776, Length=586, Percent_Identity=34.3003412969283, Blast_Score=306, Evalue=7e-84, Organism=Saccharomyces cerevisiae, GI6321731, Length=586, Percent_Identity=34.1296928327645, Blast_Score=305, Evalue=1e-83, Organism=Saccharomyces cerevisiae, GI6321726, Length=580, Percent_Identity=31.8965517241379, Blast_Score=288, Evalue=2e-78, Organism=Saccharomyces cerevisiae, GI6324416, Length=584, Percent_Identity=32.7054794520548, Blast_Score=284, Evalue=2e-77, Organism=Saccharomyces cerevisiae, GI6322241, Length=584, Percent_Identity=32.7054794520548, Blast_Score=283, Evalue=3e-77, Organism=Saccharomyces cerevisiae, GI6322021, Length=584, Percent_Identity=32.7054794520548, Blast_Score=283, Evalue=3e-77, Organism=Drosophila melanogaster, GI24583745, Length=523, Percent_Identity=37.2848948374761, Blast_Score=283, Evalue=2e-76, Organism=Drosophila melanogaster, GI24583749, Length=552, Percent_Identity=34.4202898550725, Blast_Score=278, Evalue=9e-75, Organism=Drosophila melanogaster, GI24583747, Length=552, Percent_Identity=34.4202898550725, Blast_Score=278, Evalue=9e-75, Organism=Drosophila melanogaster, GI24586599, Length=542, Percent_Identity=33.5793357933579, Blast_Score=268, Evalue=1e-71, Organism=Drosophila melanogaster, GI45549022, Length=539, Percent_Identity=33.7662337662338, Blast_Score=256, Evalue=4e-68, Organism=Drosophila melanogaster, GI24586587, Length=502, Percent_Identity=32.6693227091633, Blast_Score=249, Evalue=4e-66, Organism=Drosophila melanogaster, GI24586589, Length=525, Percent_Identity=32.7619047619048, Blast_Score=240, Evalue=2e-63, Organism=Drosophila melanogaster, GI221330053, Length=205, Percent_Identity=52.1951219512195, Blast_Score=229, Evalue=4e-60, Organism=Drosophila melanogaster, GI24586597, Length=208, Percent_Identity=49.0384615384615, Blast_Score=218, Evalue=8e-57, Organism=Drosophila melanogaster, GI24586593, Length=206, Percent_Identity=50.9708737864078, Blast_Score=216, Evalue=3e-56, Organism=Drosophila melanogaster, GI24586591, Length=202, Percent_Identity=49.5049504950495, Blast_Score=212, Evalue=6e-55, Organism=Drosophila melanogaster, GI281360393, Length=152, Percent_Identity=44.7368421052632, Blast_Score=134, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR006589 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00128 Alpha-amylase [H]
EC number: =3.2.1.10 [H]
Molecular weight: Translated: 64958; Mature: 64958
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKKWWQKEIVYQIYPRSFQDSNNDGIGDLQGIISRLDYLKDLGITSLWLCPIFKSPMDD CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC NGYDISDYLDIASEFGSMEDLKELIKESKDRGIKIILDLVLNHTSDEHPWFQEALKNPES CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCC PYHDYYIFKKGNDLPNNWRSVFGGSVWEKVENRDEYYFHSFGKKQPDLNWENPILRSELY CCCCEEEEECCCCCCHHHHHHHCCHHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHHHHH QMINTWSQMGVAGFRVDAITFIKKNLSFQSLESDGVDGLVKCTKTVRNQPGIEKMLYELK HHHHHHHHHCCCCEEHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHH ENTFKKYDCMTVAEAAGISYDQLGDFIGEDGFFSMVFDFKHADLDVASGSEWFKRISWTI HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCC PDLRKCILDSQMYVQEHGWAANFIENHDQPRATTKYLLQYERNDDAVKMLGAMYFFLRGT HHHHHHHHCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC PFIYQGQELGMTNFKRDTINDFNDLSSIDQYYRSIDESYSEEEALEFVNLRSRDNARTPF CEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC PWADKENAGFSDTTPWLKVIENYKDINAQSQINNSESILEFYKKMIKLRQDSEYSDCLIY CCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEE GSIEPIDIESDDIIAYRRQLDLVVIDCYYNFSDKPVEIRVEEKYDIVFQNLDDINLLNKT CCCCCCCCCCCCHHHHHHHCCEEEEEEEECCCCCCEEEEECCCHHHHHHCCCHHHHHHHH VRLKPFHAVLLKVR HCCCHHHHEEEECC >Mature Secondary Structure MEKKWWQKEIVYQIYPRSFQDSNNDGIGDLQGIISRLDYLKDLGITSLWLCPIFKSPMDD CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC NGYDISDYLDIASEFGSMEDLKELIKESKDRGIKIILDLVLNHTSDEHPWFQEALKNPES CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCC PYHDYYIFKKGNDLPNNWRSVFGGSVWEKVENRDEYYFHSFGKKQPDLNWENPILRSELY CCCCEEEEECCCCCCHHHHHHHCCHHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHHHHH QMINTWSQMGVAGFRVDAITFIKKNLSFQSLESDGVDGLVKCTKTVRNQPGIEKMLYELK HHHHHHHHHCCCCEEHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHH ENTFKKYDCMTVAEAAGISYDQLGDFIGEDGFFSMVFDFKHADLDVASGSEWFKRISWTI HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCC PDLRKCILDSQMYVQEHGWAANFIENHDQPRATTKYLLQYERNDDAVKMLGAMYFFLRGT HHHHHHHHCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC PFIYQGQELGMTNFKRDTINDFNDLSSIDQYYRSIDESYSEEEALEFVNLRSRDNARTPF CEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC PWADKENAGFSDTTPWLKVIENYKDINAQSQINNSESILEFYKKMIKLRQDSEYSDCLIY CCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEE GSIEPIDIESDDIIAYRRQLDLVVIDCYYNFSDKPVEIRVEEKYDIVFQNLDDINLLNKT CCCCCCCCCCCCHHHHHHHCCEEEEEEEECCCCCCEEEEECCCHHHHHHCCCHHHHHHHH VRLKPFHAVLLKVR HCCCHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1761534 [H]