| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698036
Identifier: 126698036
GI number: 126698036
Start: 547342
End: 550002
Strand: Direct
Name: 126698036
Synonym: CD0460
Alternate gene names: NA
Gene position: 547342-550002 (Clockwise)
Preceding gene: 126698035
Following gene: 126698040
Centisome position: 12.76
GC content: 30.67
Gene sequence:
>2661_bases ATGAATATTCTTCAAGAATACACCTTAGACTTTGTACGACGCAATAAACGTAGTAGTATAGCTATAATGTTAGCTATATT ACTTACTACAACCATGATGTCTTCTTTGTGTGGACTGTTGTATACCATGTGGACAGATTTTATAAAACTTTCAATTGAGA AAGAAGGTAACTGGCATGGTGAATTGTTTGACTATACTTATGGAAGTGACTTACCATTAATTGAAAATTTTTCTTCAGTT GATGATGTAATGGTAAAAGGACAATGGTATGTAGGCAAAATTAATGATGAGAAAAGAGATTATATAATTTATAGAAATGC TACATCAGAGTATTGGGATTCTATGCCAGAAAAGGATACTATAATAGAGGGTCGTCGACCAAATAATGCTAATGAAATTG CATTATCAAAACAATATTTTGAGAATAATCCAAGTGTAAAAATTGGTGATAAAATTACTCTCCCAATAGGAGATAGAATC CTAAATGGAAAGCCTCTTGAACCCATAGCCCCAAAATCGAAAGGGGAAAGTTTTAAAAAAATTTCAGAGGCTACATTGAC AATAGTAGGAAAGGTAGATGTTTCTACTTCATCAGTAATACCTGCATATACAGCTCTTGGATATCTTGATAAAACAAGTA TAAAACCTAATGATAGTATAACTGTGTACTTGCGATTTAAAAATATAAGAGACACGTATAAGGAACTTCCAAAACTTGCT AAATCATTGGGGTGGAAGACTAATGAATATGGAAAATACAATCTTAAATACAATAGTAATTATCTTTTAAAGATGTTAGT CTTTTCACCAGAACAGAAAGCATCTATGAGTAGTATATCAAAATTTTCAACTCCTATTATGTATCTTACAATAGCAATTT TTACAGTAGCCGTGTTTGTAATGGTGATTTACAACGCGTTTTCACTGTCTGCAAATGCTAGACTTACTCAGTTAGGGATA TTATCTAGTGTTGGTGCATCACCAAAACAAATTAAAAGGTCTGTAGTGTTTGAAGGCTTTTTACTGACAATTATACCATT ACCAATAGGTTTATTTTTAGGATGGTTATTGTGTAATAGGCTTATAGTTTATGTTAATTCAGTTAATTATCATACTGATG TTCCAGAAGTGGTATTTACTTATGGTATTCCTGCTTTTCTGCCAGCAGTTTTACTTACAATAGTAACAGTCTGGATTTCT GCACTTATACCAGCACGAAAAGTATCAAAGATATCTCCTATAGAAGCAATACGACAAGGAGATAGTGTTAAAATCAAAAA GTCGCATAAATATTCATTAGGAAAGATATTTGGAATAGAAGGAGAACTTGCATCAAACGCACTACGTGCTCGTAAAAAAT CTTATCGTACTGCAACAATATCTTTAACATTATCTTTTTTATTACTTACATGTTTTTTGCATATAATTGCAAATCAAGAA GGAGCAAAAGCTGTTTATGGAAGTGATAATTATAAGGACCAAAGAGATATAGCAGTTTATTTGGAAAATAGTGAACCTGT AGAGTCTGCTTTCATTGAAAAATTAGATAATACAGAAGGTGTAAAAAGTTCACTATATTATCAAAAAATGTCTGCTTCCA CTTGGCTGACTGAAAAAGATGCATCAAAAGAACTTGCGAAAAATGGAGGATTTAAAAGTATAGTTTCATCTAAAAAATAC TCTCCTATAGAACGTGATGGCAAGTTTCGTATAATTTCAAATATAATTGGGCTTGATGATAAGAGTTTTACAGAATATTG TAGGCAAATTTCTGTAGACCCAAAGTTATTTTATGATACAAAAAATCCAACCTCAATTGTATATAATAAGGAGGAAGATA TTAATCGTAGTACACGTAGAAATAAAGTATATATAGATTATTTAAATCTTTCAATAGGAGATAACATTAAATTAAATGAA AAAGTATATGACGAAGATAAAGGGGATTATACTTACAACATGAAAGTGGGAGCTATTACAAGCACACTTCCTAAAATAGT AGATACTAGTTCAAAATATACATTAATGCAAATAGTGCCAATGTCTATGGTGCAGGAAATATCTAAAAATTATGATGAAG TAAGTAGGTTACGTTCAAATAGGCTGATAGGAGTATTTAAAGTAAATAATCGTGAGGACATTCCTAGAGTAAGAGAAAAA TTAGAGTCCATTTATAATAAAGACTATGGTTCAGGAGATTATAGTATTGAGGATGTTTTAGAAAGTGAAAAACAAAAGGC TAGTGGAATAAAGACCATGAATTTAATAGTAGGCTTTATTACAGGTTTATTGGCTATGATTGGATTATCAAATGTACTTG CTACAGTGTCAGGAAATATTAGAAGTAGACGACAAGAGTTTGCTATGTTGCGTTCTGTTGGATTATCTCCAGAAGGCATA AAAAAGATGCTTATTTTGGAAGGTTTATTCTTAGGAATTACACCATTACTACTTAGTATTCCTGTGCAAATAGGAATAGT GTATGCTTTTCTACGTATAAATGAAATATATTTTATAGAGTATTTACCATTTGCACCTATATCTACAATAATAGGTTTTA CTATATTGATACTTTTTATTGTAATAGCATCATATATGACAGGATACAAGCAGTTGAAGAATGAAAATATAGTAGAATCT ATAAAAAATGAAACAATATAA
Upstream 100 bases:
>100_bases CAATACTTCTTATTACTCATGATGAGAAAATAGCACTAGAGGCAAATCGTATTGTAACTATGGAAGATGGAGTGATTGTC TCTGAAAAGGTGGTGAAGAA
Downstream 100 bases:
>100_bases ACAAAATCTATTTGAACTTATTTAAAGGTTTCGATTTAAGACTACTTACAAGTATAGGGATAGTTAAGTTGTTTGTTTAA TAAAACCTTAAATGTAAATA
Product: ABC transporter permease
Products: NA
Alternate protein names: ABC Transporter Permease; Permease; Efflux ABC Transporter Permease Protein; ABC Transporter Integral Membrane Protein; ABC Lipoprotein Transporter Permease Component; Abc Transporter Integral Membrane Subunit; ABC Transporter-Associated Permease; ATP Transporter Permease
Number of amino acids: Translated: 886; Mature: 886
Protein sequence:
>886_residues MNILQEYTLDFVRRNKRSSIAIMLAILLTTTMMSSLCGLLYTMWTDFIKLSIEKEGNWHGELFDYTYGSDLPLIENFSSV DDVMVKGQWYVGKINDEKRDYIIYRNATSEYWDSMPEKDTIIEGRRPNNANEIALSKQYFENNPSVKIGDKITLPIGDRI LNGKPLEPIAPKSKGESFKKISEATLTIVGKVDVSTSSVIPAYTALGYLDKTSIKPNDSITVYLRFKNIRDTYKELPKLA KSLGWKTNEYGKYNLKYNSNYLLKMLVFSPEQKASMSSISKFSTPIMYLTIAIFTVAVFVMVIYNAFSLSANARLTQLGI LSSVGASPKQIKRSVVFEGFLLTIIPLPIGLFLGWLLCNRLIVYVNSVNYHTDVPEVVFTYGIPAFLPAVLLTIVTVWIS ALIPARKVSKISPIEAIRQGDSVKIKKSHKYSLGKIFGIEGELASNALRARKKSYRTATISLTLSFLLLTCFLHIIANQE GAKAVYGSDNYKDQRDIAVYLENSEPVESAFIEKLDNTEGVKSSLYYQKMSASTWLTEKDASKELAKNGGFKSIVSSKKY SPIERDGKFRIISNIIGLDDKSFTEYCRQISVDPKLFYDTKNPTSIVYNKEEDINRSTRRNKVYIDYLNLSIGDNIKLNE KVYDEDKGDYTYNMKVGAITSTLPKIVDTSSKYTLMQIVPMSMVQEISKNYDEVSRLRSNRLIGVFKVNNREDIPRVREK LESIYNKDYGSGDYSIEDVLESEKQKASGIKTMNLIVGFITGLLAMIGLSNVLATVSGNIRSRRQEFAMLRSVGLSPEGI KKMLILEGLFLGITPLLLSIPVQIGIVYAFLRINEIYFIEYLPFAPISTIIGFTILILFIVIASYMTGYKQLKNENIVES IKNETI
Sequences:
>Translated_886_residues MNILQEYTLDFVRRNKRSSIAIMLAILLTTTMMSSLCGLLYTMWTDFIKLSIEKEGNWHGELFDYTYGSDLPLIENFSSV DDVMVKGQWYVGKINDEKRDYIIYRNATSEYWDSMPEKDTIIEGRRPNNANEIALSKQYFENNPSVKIGDKITLPIGDRI LNGKPLEPIAPKSKGESFKKISEATLTIVGKVDVSTSSVIPAYTALGYLDKTSIKPNDSITVYLRFKNIRDTYKELPKLA KSLGWKTNEYGKYNLKYNSNYLLKMLVFSPEQKASMSSISKFSTPIMYLTIAIFTVAVFVMVIYNAFSLSANARLTQLGI LSSVGASPKQIKRSVVFEGFLLTIIPLPIGLFLGWLLCNRLIVYVNSVNYHTDVPEVVFTYGIPAFLPAVLLTIVTVWIS ALIPARKVSKISPIEAIRQGDSVKIKKSHKYSLGKIFGIEGELASNALRARKKSYRTATISLTLSFLLLTCFLHIIANQE GAKAVYGSDNYKDQRDIAVYLENSEPVESAFIEKLDNTEGVKSSLYYQKMSASTWLTEKDASKELAKNGGFKSIVSSKKY SPIERDGKFRIISNIIGLDDKSFTEYCRQISVDPKLFYDTKNPTSIVYNKEEDINRSTRRNKVYIDYLNLSIGDNIKLNE KVYDEDKGDYTYNMKVGAITSTLPKIVDTSSKYTLMQIVPMSMVQEISKNYDEVSRLRSNRLIGVFKVNNREDIPRVREK LESIYNKDYGSGDYSIEDVLESEKQKASGIKTMNLIVGFITGLLAMIGLSNVLATVSGNIRSRRQEFAMLRSVGLSPEGI KKMLILEGLFLGITPLLLSIPVQIGIVYAFLRINEIYFIEYLPFAPISTIIGFTILILFIVIASYMTGYKQLKNENIVES IKNETI >Mature_886_residues MNILQEYTLDFVRRNKRSSIAIMLAILLTTTMMSSLCGLLYTMWTDFIKLSIEKEGNWHGELFDYTYGSDLPLIENFSSV DDVMVKGQWYVGKINDEKRDYIIYRNATSEYWDSMPEKDTIIEGRRPNNANEIALSKQYFENNPSVKIGDKITLPIGDRI LNGKPLEPIAPKSKGESFKKISEATLTIVGKVDVSTSSVIPAYTALGYLDKTSIKPNDSITVYLRFKNIRDTYKELPKLA KSLGWKTNEYGKYNLKYNSNYLLKMLVFSPEQKASMSSISKFSTPIMYLTIAIFTVAVFVMVIYNAFSLSANARLTQLGI LSSVGASPKQIKRSVVFEGFLLTIIPLPIGLFLGWLLCNRLIVYVNSVNYHTDVPEVVFTYGIPAFLPAVLLTIVTVWIS ALIPARKVSKISPIEAIRQGDSVKIKKSHKYSLGKIFGIEGELASNALRARKKSYRTATISLTLSFLLLTCFLHIIANQE GAKAVYGSDNYKDQRDIAVYLENSEPVESAFIEKLDNTEGVKSSLYYQKMSASTWLTEKDASKELAKNGGFKSIVSSKKY SPIERDGKFRIISNIIGLDDKSFTEYCRQISVDPKLFYDTKNPTSIVYNKEEDINRSTRRNKVYIDYLNLSIGDNIKLNE KVYDEDKGDYTYNMKVGAITSTLPKIVDTSSKYTLMQIVPMSMVQEISKNYDEVSRLRSNRLIGVFKVNNREDIPRVREK LESIYNKDYGSGDYSIEDVLESEKQKASGIKTMNLIVGFITGLLAMIGLSNVLATVSGNIRSRRQEFAMLRSVGLSPEGI KKMLILEGLFLGITPLLLSIPVQIGIVYAFLRINEIYFIEYLPFAPISTIIGFTILILFIVIASYMTGYKQLKNENIVES IKNETI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100030; Mature: 100030
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNILQEYTLDFVRRNKRSSIAIMLAILLTTTMMSSLCGLLYTMWTDFIKLSIEKEGNWHG CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCC ELFDYTYGSDLPLIENFSSVDDVMVKGQWYVGKINDEKRDYIIYRNATSEYWDSMPEKDT CEEEECCCCCCCHHHCCCCHHHHEEECCEEEEEECCCCCCEEEEECCCHHHHHCCCCCCC IIEGRRPNNANEIALSKQYFENNPSVKIGDKITLPIGDRILNGKPLEPIAPKSKGESFKK EECCCCCCCCCCEEEEHHHHCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH ISEATLTIVGKVDVSTSSVIPAYTALGYLDKTSIKPNDSITVYLRFKNIRDTYKELPKLA HHHCEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHH KSLGWKTNEYGKYNLKYNSNYLLKMLVFSPEQKASMSSISKFSTPIMYLTIAIFTVAVFV HHHCCCCCCCCEEEEEECCCEEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH MVIYNAFSLSANARLTQLGILSSVGASPKQIKRSVVFEGFLLTIIPLPIGLFLGWLLCNR HHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIVYVNSVNYHTDVPEVVFTYGIPAFLPAVLLTIVTVWISALIPARKVSKISPIEAIRQG HEEEEECCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHCC DSVKIKKSHKYSLGKIFGIEGELASNALRARKKSYRTATISLTLSFLLLTCFLHIIANQE CCEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHCCC GAKAVYGSDNYKDQRDIAVYLENSEPVESAFIEKLDNTEGVKSSLYYQKMSASTWLTEKD CCEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCH ASKELAKNGGFKSIVSSKKYSPIERDGKFRIISNIIGLDDKSFTEYCRQISVDPKLFYDT HHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEHHHHCCCCHHHHHHHHHCCCCCEEEEEC KNPTSIVYNKEEDINRSTRRNKVYIDYLNLSIGDNIKLNEKVYDEDKGDYTYNMKVGAIT CCCCEEEECCHHHCCHHHCCCEEEEEEEEEECCCCEEECCHHCCCCCCCEEEEEEECHHH STLPKIVDTSSKYTLMQIVPMSMVQEISKNYDEVSRLRSNRLIGVFKVNNREDIPRVREK HHHHHHHCCCCCEEHHHHHHHHHHHHHHHCHHHHHHHHCCCEEEEEEECCCCCCHHHHHH LESIYNKDYGSGDYSIEDVLESEKQKASGIKTMNLIVGFITGLLAMIGLSNVLATVSGNI HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH RSRRQEFAMLRSVGLSPEGIKKMLILEGLFLGITPLLLSIPVQIGIVYAFLRINEIYFIE HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE YLPFAPISTIIGFTILILFIVIASYMTGYKQLKNENIVESIKNETI ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC >Mature Secondary Structure MNILQEYTLDFVRRNKRSSIAIMLAILLTTTMMSSLCGLLYTMWTDFIKLSIEKEGNWHG CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCC ELFDYTYGSDLPLIENFSSVDDVMVKGQWYVGKINDEKRDYIIYRNATSEYWDSMPEKDT CEEEECCCCCCCHHHCCCCHHHHEEECCEEEEEECCCCCCEEEEECCCHHHHHCCCCCCC IIEGRRPNNANEIALSKQYFENNPSVKIGDKITLPIGDRILNGKPLEPIAPKSKGESFKK EECCCCCCCCCCEEEEHHHHCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH ISEATLTIVGKVDVSTSSVIPAYTALGYLDKTSIKPNDSITVYLRFKNIRDTYKELPKLA HHHCEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHH KSLGWKTNEYGKYNLKYNSNYLLKMLVFSPEQKASMSSISKFSTPIMYLTIAIFTVAVFV HHHCCCCCCCCEEEEEECCCEEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH MVIYNAFSLSANARLTQLGILSSVGASPKQIKRSVVFEGFLLTIIPLPIGLFLGWLLCNR HHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIVYVNSVNYHTDVPEVVFTYGIPAFLPAVLLTIVTVWISALIPARKVSKISPIEAIRQG HEEEEECCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHCC DSVKIKKSHKYSLGKIFGIEGELASNALRARKKSYRTATISLTLSFLLLTCFLHIIANQE CCEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHCCC GAKAVYGSDNYKDQRDIAVYLENSEPVESAFIEKLDNTEGVKSSLYYQKMSASTWLTEKD CCEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCH ASKELAKNGGFKSIVSSKKYSPIERDGKFRIISNIIGLDDKSFTEYCRQISVDPKLFYDT HHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEHHHHCCCCHHHHHHHHHCCCCCEEEEEC KNPTSIVYNKEEDINRSTRRNKVYIDYLNLSIGDNIKLNEKVYDEDKGDYTYNMKVGAIT CCCCEEEECCHHHCCHHHCCCEEEEEEEEEECCCCEEECCHHCCCCCCCEEEEEEECHHH STLPKIVDTSSKYTLMQIVPMSMVQEISKNYDEVSRLRSNRLIGVFKVNNREDIPRVREK HHHHHHHCCCCCEEHHHHHHHHHHHHHHHCHHHHHHHHCCCEEEEEEECCCCCCHHHHHH LESIYNKDYGSGDYSIEDVLESEKQKASGIKTMNLIVGFITGLLAMIGLSNVLATVSGNI HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH RSRRQEFAMLRSVGLSPEGIKKMLILEGLFLGITPLLLSIPVQIGIVYAFLRINEIYFIE HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE YLPFAPISTIIGFTILILFIVIASYMTGYKQLKNENIVESIKNETI ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA