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The map label for this gene is ygeV [H]

Identifier: 126697971

GI number: 126697971

Start: 474965

End: 476608

Strand: Direct

Name: ygeV [H]

Synonym: CD0402

Alternate gene names: 126697971

Gene position: 474965-476608 (Clockwise)

Preceding gene: 126697970

Following gene: 126697973

Centisome position: 11.07

GC content: 29.26

Gene sequence:

>1644_bases
GTGCGAATATTAATGGATAATAATTTAATAGGGCTTATAGAACATGTAGAAAATCCAGCCATTTTATGTAAAGAATCAGG
CGAAATAATATACTGTAATCATCTAATAGATAGTATTTTTAGTTTTCTAGATATAAAAAAGCCTAGAAATATAAATGAAT
TAGATTCAAATTTTGACAAAACAGAAATACTGACAGATAGTAAAAAGAAAATAGCTTTCAGAGAGTTAAGGATGACTGCA
CATATATACAATATGAAAGATAATAATAATGAAAATAATATAGTTTATTTATTTGAGAAGTCTCTAATATCTGATAAAGT
AATTGAAGATATAATAGAGCATATAGATGAAGTTGTTGTTGTGTTTAACAAAGATGGGGTAATTGAAAAGATGAACACTG
TCAGTGATGAGATATTACCTTTTAAAAGAACTGAGGTACTTGGTAGAAATATAACAGACCTTGTGAGACAAGGATTAGTT
GAAGAACCAATAATATTAAACATGCTTAAAGTGAAGAAAAAGATTTATAGAAATATCGTTTACCCAGATGGGAAGCTTAT
TGCATATACGGCAGTTCCAAGATGGGATTCTAAGGGAAAGCTTACAGGAGGAGTACTAACAGGGAGAGATATTTCAAGGG
TTATTAAGCTTGAATCTCAGATAAAATATAGTGATATATCAGAAGACACAGAGTATATAAGTCAAAGTAAGATTATGGAC
AATATAAAAAAAGTTGTTAAGAGAGCTGCAGCCTCAGATTCTTCTATATTTATAAATGGAGAATCAGGTGTGGGAAAAGA
AATAATAGCAAGAACAATATATAAGTATAGTTCAAGGAGAGACAAACCTTTTATAGCTATAAACTGTGGAGCTATACCAA
ATGAATTATTAGAGTCAGAGTTTTTTGGATATGAAGAAGGTTCTTTTACTGGAGCTAAGAAAAAAGGTAAAAAGGGACTT
TTTGAAGAGGCGAATGGTGGAACTATTTTCTTGGATGAGATAGGTGAGTTACCAATGCAGATGCAAAAAAAATTACTTAG
GGTTATACAAGAAAATACTATTACTAGAATAGGTGGTAGTAAGCCTATAAAAATAGATGTTAGATATATAAGTGCTACTA
ATATTTCTCATGAAGACCTTAGAAATAACCTTAAATTTAGACAAGATTTGTACTATAGATTAAGTGTTATTCCAGTAAAA
ATACCTCCTCTTAGAGAAAGAAAAGAGGATATAGTACCATTAGTAAATTATTTCTTAAAACTTTACAATGAAAAGTACAA
TAGAGAAGTAGAAGTTTCGCCTAAAGTTATTGAGTTATTAGAAGAATATTCTTGGCCAGGAAACATAAGAGAATTAAAAA
ACATCATTGAAAGATTTGTAGTATTATCAGCTAAAAATGTAATTGGAGAAGATGAATTTAACATGCTTATAAATTTAGAT
ATGATTGATAATGAAACAGATGATTTATCACCAATAGTGGTAAATGGAATTATGAATCTTAATGATGCATATAAAATAGT
GGACCAAATAATGATAAGTAAGGCTATAAATAAGTATGGTTCAATAACAAAGGCTGCTGAAGTTATAGGTATATATCCTT
CTACCATCCATAGAAAGATAAAGAGTGGACATATTCACGTTTAG

Upstream 100 bases:

>100_bases
AAAGACGAATATTATAAGGAGTTGATTATATGTGCTGATGGTATTTATTGTAAGCAAACAATAAATTTTGTATGTAGTTC
AATAAATTACTTAATGAAAG

Downstream 100 bases:

>100_bases
CTGTCAGTTTAAAAAGACAATATAATTAAAATATTATAAGATACATAATTTATACAACTTAAAAGAGATGGCTTAAAAAT
AAATTTAATTACTTTAAGTC

Product: sigma-54-dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MRILMDNNLIGLIEHVENPAILCKESGEIIYCNHLIDSIFSFLDIKKPRNINELDSNFDKTEILTDSKKKIAFRELRMTA
HIYNMKDNNNENNIVYLFEKSLISDKVIEDIIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLV
EEPIILNMLKVKKKIYRNIVYPDGKLIAYTAVPRWDSKGKLTGGVLTGRDISRVIKLESQIKYSDISEDTEYISQSKIMD
NIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEGSFTGAKKKGKKGL
FEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSVIPVK
IPPLRERKEDIVPLVNYFLKLYNEKYNREVEVSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVIGEDEFNMLINLD
MIDNETDDLSPIVVNGIMNLNDAYKIVDQIMISKAINKYGSITKAAEVIGIYPSTIHRKIKSGHIHV

Sequences:

>Translated_547_residues
MRILMDNNLIGLIEHVENPAILCKESGEIIYCNHLIDSIFSFLDIKKPRNINELDSNFDKTEILTDSKKKIAFRELRMTA
HIYNMKDNNNENNIVYLFEKSLISDKVIEDIIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLV
EEPIILNMLKVKKKIYRNIVYPDGKLIAYTAVPRWDSKGKLTGGVLTGRDISRVIKLESQIKYSDISEDTEYISQSKIMD
NIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEGSFTGAKKKGKKGL
FEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSVIPVK
IPPLRERKEDIVPLVNYFLKLYNEKYNREVEVSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVIGEDEFNMLINLD
MIDNETDDLSPIVVNGIMNLNDAYKIVDQIMISKAINKYGSITKAAEVIGIYPSTIHRKIKSGHIHV
>Mature_547_residues
MRILMDNNLIGLIEHVENPAILCKESGEIIYCNHLIDSIFSFLDIKKPRNINELDSNFDKTEILTDSKKKIAFRELRMTA
HIYNMKDNNNENNIVYLFEKSLISDKVIEDIIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLV
EEPIILNMLKVKKKIYRNIVYPDGKLIAYTAVPRWDSKGKLTGGVLTGRDISRVIKLESQIKYSDISEDTEYISQSKIMD
NIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEGSFTGAKKKGKKGL
FEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSVIPVK
IPPLRERKEDIVPLVNYFLKLYNEKYNREVEVSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVIGEDEFNMLINLD
MIDNETDDLSPIVVNGIMNLNDAYKIVDQIMISKAINKYGSITKAAEVIGIYPSTIHRKIKSGHIHV

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=364, Percent_Identity=42.032967032967, Blast_Score=286, Evalue=2e-78,
Organism=Escherichia coli, GI1788550, Length=342, Percent_Identity=40.3508771929825, Blast_Score=251, Evalue=9e-68,
Organism=Escherichia coli, GI87082117, Length=237, Percent_Identity=48.9451476793249, Blast_Score=246, Evalue=3e-66,
Organism=Escherichia coli, GI1786524, Length=333, Percent_Identity=38.1381381381381, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1790437, Length=313, Percent_Identity=39.9361022364217, Blast_Score=240, Evalue=2e-64,
Organism=Escherichia coli, GI1790299, Length=329, Percent_Identity=36.7781155015198, Blast_Score=230, Evalue=2e-61,
Organism=Escherichia coli, GI1788905, Length=258, Percent_Identity=45.7364341085271, Blast_Score=225, Evalue=6e-60,
Organism=Escherichia coli, GI1789087, Length=425, Percent_Identity=33.4117647058824, Blast_Score=219, Evalue=3e-58,
Organism=Escherichia coli, GI87082152, Length=246, Percent_Identity=43.0894308943089, Blast_Score=209, Evalue=4e-55,
Organism=Escherichia coli, GI87081872, Length=221, Percent_Identity=45.2488687782805, Blast_Score=194, Evalue=2e-50,
Organism=Escherichia coli, GI1787583, Length=343, Percent_Identity=31.7784256559767, Blast_Score=192, Evalue=5e-50,
Organism=Escherichia coli, GI87081858, Length=437, Percent_Identity=26.3157894736842, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI1789828, Length=248, Percent_Identity=32.6612903225806, Blast_Score=138, Evalue=9e-34,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 62603; Mature: 62603

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILMDNNLIGLIEHVENPAILCKESGEIIYCNHLIDSIFSFLDIKKPRNINELDSNFDK
CEEEECCCCHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHHHHHCCCCCCCCHHHCCCCH
TEILTDSKKKIAFRELRMTAHIYNMKDNNNENNIVYLFEKSLISDKVIEDIIEHIDEVVV
HHHCCCCHHHHHHHHHHHHHEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHEEE
VFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLVEEPIILNMLKVKKKIYRNIV
EECCCCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
YPDGKLIAYTAVPRWDSKGKLTGGVLTGRDISRVIKLESQIKYSDISEDTEYISQSKIMD
CCCCCEEEEEECCCCCCCCCCCCCEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
NIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESE
HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH
FFGYEEGSFTGAKKKGKKGLFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGS
HCCCCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCEEECCCC
KPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSVIPVKIPPLRERKEDIVPLVNYFLK
CCEEEEEEEEEECCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCHHHHHHHHHHHHHHHH
LYNEKYNREVEVSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVIGEDEFNMLINLD
HHHHHHCCEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
MIDNETDDLSPIVVNGIMNLNDAYKIVDQIMISKAINKYGSITKAAEVIGIYPSTIHRKI
EECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHH
KSGHIHV
HCCCCCC
>Mature Secondary Structure
MRILMDNNLIGLIEHVENPAILCKESGEIIYCNHLIDSIFSFLDIKKPRNINELDSNFDK
CEEEECCCCHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHHHHHCCCCCCCCHHHCCCCH
TEILTDSKKKIAFRELRMTAHIYNMKDNNNENNIVYLFEKSLISDKVIEDIIEHIDEVVV
HHHCCCCHHHHHHHHHHHHHEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHEEE
VFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLVEEPIILNMLKVKKKIYRNIV
EECCCCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
YPDGKLIAYTAVPRWDSKGKLTGGVLTGRDISRVIKLESQIKYSDISEDTEYISQSKIMD
CCCCCEEEEEECCCCCCCCCCCCCEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
NIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESE
HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH
FFGYEEGSFTGAKKKGKKGLFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGS
HCCCCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCEEECCCC
KPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSVIPVKIPPLRERKEDIVPLVNYFLK
CCEEEEEEEEEECCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCHHHHHHHHHHHHHHHH
LYNEKYNREVEVSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVIGEDEFNMLINLD
HHHHHHCCEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
MIDNETDDLSPIVVNGIMNLNDAYKIVDQIMISKAINKYGSITKAAEVIGIYPSTIHRKI
EECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHH
KSGHIHV
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]