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The map label for this gene is agaC [H]

Identifier: 126697860

GI number: 126697860

Start: 348576

End: 349331

Strand: Direct

Name: agaC [H]

Synonym: CD0288

Alternate gene names: 126697860

Gene position: 348576-349331 (Clockwise)

Preceding gene: 126697859

Following gene: 126697861

Centisome position: 8.12

GC content: 33.33

Gene sequence:

>756_bases
ATGGAATCTGTTTTGATGTTGGCAATTGTAACAGGATTATGGTATTGGTTTGCAGCAGGTCTTGCAGGGTATACCCTTTT
CTCAACACTAAAGTCTCCTTTATTTATAGGTTTTAGCCTTGGATTACTTTGGGGTGATGTAACAACTGGTATGATTGTTG
GTGCAAGTATAGAAATGGTTTATCTAGGAATGGTCGCAGCAGGGGGAAATATTCCATCAGATAAATGTCTAGCTGCTCTT
ATTGCAATACCAGTAGCACTTCAAACTGGTGTTAATGCAGAAGTTGCAGTATCTATTGCGGTACCTTTAGGTGTTATAGG
AGTATTAGTTAATAACTTAAGAAGAACTGGTAATGCTGTATTGGTTCATAAGGCAGATAAGTATGCTGAAGAAGGTAATA
CAAAAGGAATCTGGAGATGTGCAACACTTTATTCTTTAATATTTGGGTTTGTTTTAAGGTTTCCAATAGTTTTTGTATGT
AACTTTTTTGGAGCAGATTTAGTTCAATCATTATTAGATGTTATACCACAATGGTTAATGAATGGATTAACAGTAATGGG
CGGTATATTACCTGCATTAGGTTTTGCAACAACAATATTTACTATAGGTAAAAATAAATTTTTACCAATGTTTATTATAG
GATTTTTTATGGTTCAATATTTTGAAATATCAATTACTGCAGCTGCAATATTTGGTGTTTGTATAGCTCTTTTAATTACC
TTTATGAAAGAAGACAAAAGGGTAGGTGAAGTATAA

Upstream 100 bases:

>100_bases
TTGAAATAGTCCTACAAGTTATACCAGAGGAATCATCTATGACATATGAAAATGCGTTAAAGAAATTTAAATAAAAAATA
TAAATTAGGAGGAATTATAA

Downstream 100 bases:

>100_bases
TGCAAGAAATAAAAAATAAAGAAGTTAAAAATGGACAAGGTCCAACTGAAGTTAATAAGACAAGAGTACTTACAAAGAAA
GATGTAACAAAAACATATCT

Product: PTS system transporter subunit IIC

Products: NA

Alternate protein names: EIIC-Aga; PTS system N-acetylgalactosamine-specific EIIC component 1 [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MESVLMLAIVTGLWYWFAAGLAGYTLFSTLKSPLFIGFSLGLLWGDVTTGMIVGASIEMVYLGMVAAGGNIPSDKCLAAL
IAIPVALQTGVNAEVAVSIAVPLGVIGVLVNNLRRTGNAVLVHKADKYAEEGNTKGIWRCATLYSLIFGFVLRFPIVFVC
NFFGADLVQSLLDVIPQWLMNGLTVMGGILPALGFATTIFTIGKNKFLPMFIIGFFMVQYFEISITAAAIFGVCIALLIT
FMKEDKRVGEV

Sequences:

>Translated_251_residues
MESVLMLAIVTGLWYWFAAGLAGYTLFSTLKSPLFIGFSLGLLWGDVTTGMIVGASIEMVYLGMVAAGGNIPSDKCLAAL
IAIPVALQTGVNAEVAVSIAVPLGVIGVLVNNLRRTGNAVLVHKADKYAEEGNTKGIWRCATLYSLIFGFVLRFPIVFVC
NFFGADLVQSLLDVIPQWLMNGLTVMGGILPALGFATTIFTIGKNKFLPMFIIGFFMVQYFEISITAAAIFGVCIALLIT
FMKEDKRVGEV
>Mature_251_residues
MESVLMLAIVTGLWYWFAAGLAGYTLFSTLKSPLFIGFSLGLLWGDVTTGMIVGASIEMVYLGMVAAGGNIPSDKCLAAL
IAIPVALQTGVNAEVAVSIAVPLGVIGVLVNNLRRTGNAVLVHKADKYAEEGNTKGIWRCATLYSLIFGFVLRFPIVFVC
NFFGADLVQSLLDVIPQWLMNGLTVMGGILPALGFATTIFTIGKNKFLPMFIIGFFMVQYFEISITAAAIFGVCIALLIT
FMKEDKRVGEV

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3715

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789528, Length=249, Percent_Identity=29.3172690763052, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788121, Length=219, Percent_Identity=27.3972602739726, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004700
- InterPro:   IPR018404 [H]

Pfam domain/function: PF03609 EII-Sor [H]

EC number: NA

Molecular weight: Translated: 26954; Mature: 26954

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS51106 PTS_EIIC_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESVLMLAIVTGLWYWFAAGLAGYTLFSTLKSPLFIGFSLGLLWGDVTTGMIVGASIEMV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
YLGMVAAGGNIPSDKCLAALIAIPVALQTGVNAEVAVSIAVPLGVIGVLVNNLRRTGNAV
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEE
LVHKADKYAEEGNTKGIWRCATLYSLIFGFVLRFPIVFVCNFFGADLVQSLLDVIPQWLM
EEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NGLTVMGGILPALGFATTIFTIGKNKFLPMFIIGFFMVQYFEISITAAAIFGVCIALLIT
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FMKEDKRVGEV
HHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 8932697 [H]