Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is 126697849

Identifier: 126697849

GI number: 126697849

Start: 339229

End: 339645

Strand: Direct

Name: 126697849

Synonym: CD0277

Alternate gene names: NA

Gene position: 339229-339645 (Clockwise)

Preceding gene: 126697848

Following gene: 126697851

Centisome position: 7.91

GC content: 25.9

Gene sequence:

>417_bases
ATGAATTGGCAAGATGCGTTTTTTCAAGATACTAAACCTACATTTGAGCAAATTAATGAATTTATTAATAATCCATTATG
GGACAAGTTAAATAAAACTTTGGTTTCTACTTATAATGTAGAACCTAAGCTTGAATACAGTAAATGTTCAATGCAAAGAG
GTTGGAATGTAAAATATAAAAAAAGAGGTAAATCACTATGTACTTTATATCCACAAGAAGGTTATTTTAAAGCTTTGGTT
ATTGTAAGTGAAAGCAATAGAGTAGAGGTTGATTTATTTATTAATACTTGTTGTGATTATATCAAAAAAATATATAATGA
GGTAAACTTTTTTAATGGAAGTAAATGGCTAATGATTCAAGTAGATAGTTTATTGGTATTAAACGATATGCTTGAACTAA
TTAAATTTAGAGCTTAA

Upstream 100 bases:

>100_bases
ATTTTGCAATTGAGATGTATTACCCCACTACACCTGAAGCAGCATATCTGGAACATTGGATTGTTCCGGTTCCTATTGAA
CAATAGAAAGGATGATGAAT

Downstream 100 bases:

>100_bases
CATATAGAACAGGATGAATATATAAGTCATCCTGTTTTTATATTCAATCAGATAAATTAATATATAGTCTATAATATGAA
TAATTTAGTAAATTTAAATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MNWQDAFFQDTKPTFEQINEFINNPLWDKLNKTLVSTYNVEPKLEYSKCSMQRGWNVKYKKRGKSLCTLYPQEGYFKALV
IVSESNRVEVDLFINTCCDYIKKIYNEVNFFNGSKWLMIQVDSLLVLNDMLELIKFRA

Sequences:

>Translated_138_residues
MNWQDAFFQDTKPTFEQINEFINNPLWDKLNKTLVSTYNVEPKLEYSKCSMQRGWNVKYKKRGKSLCTLYPQEGYFKALV
IVSESNRVEVDLFINTCCDYIKKIYNEVNFFNGSKWLMIQVDSLLVLNDMLELIKFRA
>Mature_138_residues
MNWQDAFFQDTKPTFEQINEFINNPLWDKLNKTLVSTYNVEPKLEYSKCSMQRGWNVKYKKRGKSLCTLYPQEGYFKALV
IVSESNRVEVDLFINTCCDYIKKIYNEVNFFNGSKWLMIQVDSLLVLNDMLELIKFRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16420; Mature: 16420

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWQDAFFQDTKPTFEQINEFINNPLWDKLNKTLVSTYNVEPKLEYSKCSMQRGWNVKYK
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHH
KRGKSLCTLYPQEGYFKALVIVSESNRVEVDLFINTCCDYIKKIYNEVNFFNGSKWLMIQ
CCCCEEEEECCCCCCEEEEEEEECCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCEEEEEE
VDSLLVLNDMLELIKFRA
ECHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNWQDAFFQDTKPTFEQINEFINNPLWDKLNKTLVSTYNVEPKLEYSKCSMQRGWNVKYK
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHH
KRGKSLCTLYPQEGYFKALVIVSESNRVEVDLFINTCCDYIKKIYNEVNFFNGSKWLMIQ
CCCCEEEEECCCCCCEEEEEEEECCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCEEEEEE
VDSLLVLNDMLELIKFRA
ECHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA