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The map label for this gene is spl [H]

Identifier: 126697847

GI number: 126697847

Start: 337099

End: 338121

Strand: Direct

Name: spl [H]

Synonym: CD0275

Alternate gene names: 126697847

Gene position: 337099-338121 (Clockwise)

Preceding gene: 126697846

Following gene: 126697848

Centisome position: 7.86

GC content: 29.13

Gene sequence:

>1023_bases
ATGTTTAATCCTAAAAGAATAATATTCGAAAAAGGAACTTTAGACACTGATGTGGGTAAAAAAATATACAATAAATTTAG
AGATAATAAAGATGTAGAGATAATTAATATATCATCAAATAGGATTAAAGAACATATTCCAGGTGAAAATCTATATGAAC
AATATAGAAGTGGGAAGCAGACTATGGTAGTTGGGATTAGAAAAAGTCTGAAGTTTCAAACATGTAAACCTTCTGCTAAT
TATCAACTACCACTTGTCAGTGGATGTATGGGAAGATGTGAGTATTGTTATTTGAACACACAATTAGGTGATAAACCATT
TATAAGGGTGTTTGTAAATGTAGATGAAATACTTGAACAGACAAAAAAATATATTGAAGATAGAAAGCCACAGGTAACCA
TATTTGAAGGGGCAGCTACATCAGACCCAGTTCCAGTAGAGCCATATACTAATTCTTTGAAGAAAACAATAGAGTTTTTT
GGAAGAGAGGAAAAAGGAAGATTTAGATTTGTTACTAAATACAGTGATGTGGATAGCTTATTGGATGCTGAACATAATAA
TCATACAGAAATACGATTTAGTATCAATACTCCTAGAATTATAAATGAACATGAGCATTATACAGCCTCTGCAAATAAAA
GAATAGAGTCAGCTGTAAAACTTGCTAGGGCTGGTTATCAGATTGGTTTCATAATAGCACCTGTGTTTTTATATGAAGGT
TGGAAAGAAGAGTATAAAAATCTGATTATAAGTATAAAAGAAGCTTTACCAAAGGATTTTGATAAAAAAATTATATTTGA
AGTTATATCTCATAGATATACAACTAAAGCAAAAAATAGAATACTAGAGATTTATCCAGATACACTATTGCCAATGGAAA
ATGAAGATAGAAAGTTTAAATACGGTCAATTTGGATATGGTAAGTACGTGTATGATAAAGAACAATTAGATGATATGAAA
GAGTTCTTTCTTAAGGAAATAAATGGAGTATTTAAAAATAGTTTAATAAAATATATAATATAG

Upstream 100 bases:

>100_bases
TTACTTTCTAATAAATAAAGGAGTTTAAAAAAGGGAAGATTAATTAAGTAATATTTTATAAAATTCTTCGATTTAAAAAC
TTTAAGTAGAGGTGAAATAA

Downstream 100 bases:

>100_bases
CAAATCTTACCTAAAGATTTGCTATATTTTATTTTTATATATTTTATGTTTATAATAAAGCAATGAGATTTAGCACTATC
ATATAAGAAAATTAAAAAGG

Product: spore photoproduct lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MFNPKRIIFEKGTLDTDVGKKIYNKFRDNKDVEIINISSNRIKEHIPGENLYEQYRSGKQTMVVGIRKSLKFQTCKPSAN
YQLPLVSGCMGRCEYCYLNTQLGDKPFIRVFVNVDEILEQTKKYIEDRKPQVTIFEGAATSDPVPVEPYTNSLKKTIEFF
GREEKGRFRFVTKYSDVDSLLDAEHNNHTEIRFSINTPRIINEHEHYTASANKRIESAVKLARAGYQIGFIIAPVFLYEG
WKEEYKNLIISIKEALPKDFDKKIIFEVISHRYTTKAKNRILEIYPDTLLPMENEDRKFKYGQFGYGKYVYDKEQLDDMK
EFFLKEINGVFKNSLIKYII

Sequences:

>Translated_340_residues
MFNPKRIIFEKGTLDTDVGKKIYNKFRDNKDVEIINISSNRIKEHIPGENLYEQYRSGKQTMVVGIRKSLKFQTCKPSAN
YQLPLVSGCMGRCEYCYLNTQLGDKPFIRVFVNVDEILEQTKKYIEDRKPQVTIFEGAATSDPVPVEPYTNSLKKTIEFF
GREEKGRFRFVTKYSDVDSLLDAEHNNHTEIRFSINTPRIINEHEHYTASANKRIESAVKLARAGYQIGFIIAPVFLYEG
WKEEYKNLIISIKEALPKDFDKKIIFEVISHRYTTKAKNRILEIYPDTLLPMENEDRKFKYGQFGYGKYVYDKEQLDDMK
EFFLKEINGVFKNSLIKYII
>Mature_340_residues
MFNPKRIIFEKGTLDTDVGKKIYNKFRDNKDVEIINISSNRIKEHIPGENLYEQYRSGKQTMVVGIRKSLKFQTCKPSAN
YQLPLVSGCMGRCEYCYLNTQLGDKPFIRVFVNVDEILEQTKKYIEDRKPQVTIFEGAATSDPVPVEPYTNSLKKTIEFF
GREEKGRFRFVTKYSDVDSLLDAEHNNHTEIRFSINTPRIINEHEHYTASANKRIESAVKLARAGYQIGFIIAPVFLYEG
WKEEYKNLIISIKEALPKDFDKKIIFEVISHRYTTKAKNRILEIYPDTLLPMENEDRKFKYGQFGYGKYVYDKEQLDDMK
EFFLKEINGVFKNSLIKYII

Specific function: Involved in repair of UV radiation-induced DNA damage during spore germination. Can repair thymine dimer 5-thyminyl-5,6- dihydrothymine (known as spore photoproduct (SP)) by in situ monomerization of SP to two thymines [H]

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. SPL family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: =4.1.99.14 [H]

Molecular weight: Translated: 39872; Mature: 39872

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNPKRIIFEKGTLDTDVGKKIYNKFRDNKDVEIINISSNRIKEHIPGENLYEQYRSGKQ
CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCHHHHHHHHCCCC
TMVVGIRKSLKFQTCKPSANYQLPLVSGCMGRCEYCYLNTQLGDKPFIRVFVNVDEILEQ
EEEEEEHHCCEEEECCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCEEEEEECHHHHHHH
TKKYIEDRKPQVTIFEGAATSDPVPVEPYTNSLKKTIEFFGREEKGRFRFVTKYSDVDSL
HHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHH
LDAEHNNHTEIRFSINTPRIINEHEHYTASANKRIESAVKLARAGYQIGFIIAPVFLYEG
HHCCCCCCEEEEEEECCCCEECCCCCEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
WKEEYKNLIISIKEALPKDFDKKIIFEVISHRYTTKAKNRILEIYPDTLLPMENEDRKFK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCEE
YGQFGYGKYVYDKEQLDDMKEFFLKEINGVFKNSLIKYII
CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFNPKRIIFEKGTLDTDVGKKIYNKFRDNKDVEIINISSNRIKEHIPGENLYEQYRSGKQ
CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCHHHHHHHHCCCC
TMVVGIRKSLKFQTCKPSANYQLPLVSGCMGRCEYCYLNTQLGDKPFIRVFVNVDEILEQ
EEEEEEHHCCEEEECCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCEEEEEECHHHHHHH
TKKYIEDRKPQVTIFEGAATSDPVPVEPYTNSLKKTIEFFGREEKGRFRFVTKYSDVDSL
HHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHH
LDAEHNNHTEIRFSINTPRIINEHEHYTASANKRIESAVKLARAGYQIGFIIAPVFLYEG
HHCCCCCCEEEEEEECCCCEECCCCCEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
WKEEYKNLIISIKEALPKDFDKKIIFEVISHRYTTKAKNRILEIYPDTLLPMENEDRKFK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCEE
YGQFGYGKYVYDKEQLDDMKEFFLKEINGVFKNSLIKYII
CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]