Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is yolJ [H]

Identifier: 126697811

GI number: 126697811

Start: 301908

End: 304049

Strand: Direct

Name: yolJ [H]

Synonym: CD0240

Alternate gene names: 126697811

Gene position: 301908-304049 (Clockwise)

Preceding gene: 126697810

Following gene: 126697812

Centisome position: 7.04

GC content: 23.44

Gene sequence:

>2142_bases
ATGTTACTTAGTATAGTTATGATGGTCAAAAACGAAGAAAATATACTTGAAAAAACTTTAAAATCGTTATCAGTATTGAG
AAATTCAATAGAGAGTGAACTTATAATAGTTGATACAGGTTCTACAGATAATACTATAAGAATAGCAAAACAATATACAG
AAAAGGTATATTTTCATAATTGGAATGATGATTTTTCTAGTATGAGAAATATATCTATATCCTACGCTAAGGGCGAATGG
TTACTTATATTAGATGCAGATGAAGTATTAATTGATTATTCAAATATTATAAAGTTTTTTGAAAGTGGTCTTAATAAAAA
ATTTAACTCTGCCTCAGTACGACTAAAAAATCTTTATTCATTTGATAAAAAATTATATGGATATTGTTCAGTGTTGAGAT
TTTTCAAAAACCTTGATTTTAAATACTGTGGGAAAGTTCATGAACAACCAATGTATAAAAATCCTATATTTAATAATATT
GCTGATTTTGAACATTATGGATATTTGTTTGAAGATGAAGAGATAAGAATAAATAAAGTAAAAAGAAATGAAAAACTGTT
ACTTGAGGAATTAAAAGAAGACGAGAAATCTCCATATACAAATTATCAAATAGGGAAAAATCTTATTATATTAGGAAAAT
ATCAAGAAGCTTTAGATTATCTAGAAAAGTCTTATAAATTATACTCAAAATTAGAAATAGTACCTGGATACTTGATAACA
AACCTTGCAAAAGTATATTTATACTTAGGAAAGGCTAAGAAGTGTGAAAAATTATGCTTAAAATATATTAATAAGGACAG
AAATAATATTGATATATATTATCATATTGCACAAGCACAAGTTGATTTAGGGAAGTATGAAAATAGTATAGATTCATATA
AAAGATATATTTATTTGCTAGATAATTATGAAATGAGTACGCAAGCAAATAGTTTGCTTTCAGATACTGATGCTGTAGGA
TTTAGAGATGAAGCTATAATTACATTGATAAAAATTTATTATAAGCTTGAGAAATATGATTTAGTAATTTCAGAGTATGA
TAATATTGAAGATGTGGAAAAAAAGAAAAATGTGTACTTTAGCTTATTTATGTCTTTATATAAATTAAATAGATTTGAAG
ACATAAAAAACTATTATAGAGAGATTCCAAATTCGAAGGTTGAGAGAGATAGTTTTTATAAAAGTATGGAAGACTTTATA
AATAATATAAAAGATGATGAGAAAGAGCTCATATATAAAAGCCTTTGTGATATTGAAGGTAATTATGGTCTTTTGAATAA
AATAAGAATAAACAAACATGTATCATTAGATACATGTAGAAAAATACTAAATGAAGAAAAAGACATAGTTTATGCAAGTG
TTATAAAAATAGCTTTTGAGGAAAAAGTTGACTTATTAGACATTTTTTACAATATGGAATATGTTTGGATAGAGAAATAC
TTAAGGTATATTTTAGCTTTAGAAAGAAGTTTTAATGTATCAATATATAAATATATAATTAGTTGTCCTAATACATCAGA
AATAGAAAAGATAAGAGTGTACAAAGTTATATCTAAAATTCTTTTAGAAAGTGTTAATTTAAGTGATAAAAAATACAAAG
AACTTTTTTATATTTATATAATGTACTCTTATAAATACATAAAATACATATATAGCAATTTGAGTGATTGTGAATTAATA
AAGTTTGTTTGTAATGACATAGATAAGTTCACTTTAGAATTTAAGCATGTACTTGATGGTAAAAGGAAGATAAATAATCC
TAATGAAAAATTAGAATATCTACATAATATGAGAATATTATTAAATGAATACCCTTTTTACAATAGAATAATAAAAATCT
TCATAAGTGAATTAGAAGAAAGTATAACAGAAAGTGAAGAATTTAAATTATTAAAAGATAACTTTATTATTCGTATAGAA
AATATGATTGAGAATGGAAAAATAAATGATGCAAAGTTATTGATTGAAGACTACTCAAAAACATTTGCAGATGATGTAAA
GATTTTAAATATAAAGGCAATTTTGTTTATGTGTGAAGATAAATTTGAAGAAGCTGATTTTGCATTAAAAAAGGCATTAT
CACTAGACTTAGAAAATGAGGATACTATATATAATATAGAGTACTTAGAAAATTTAAAATAA

Upstream 100 bases:

>100_bases
AGGATAGAATAAATTTAGTATATTGAATAAAAAAGAAAGGATAAGGCTTTGCTTTATTCTTTTCTTTTTTTAGAAATATA
GTTTTGAAAGGAAAATATAT

Downstream 100 bases:

>100_bases
ATTTAAAACTAGGTTATTTAGAAAATAATAATATCAATAACAGTTAATGAAAAATATAATAGAAGATTGAATATATACAT
ATAAAAATACTGATGTAAAA

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 713; Mature: 713

Protein sequence:

>713_residues
MLLSIVMMVKNEENILEKTLKSLSVLRNSIESELIIVDTGSTDNTIRIAKQYTEKVYFHNWNDDFSSMRNISISYAKGEW
LLILDADEVLIDYSNIIKFFESGLNKKFNSASVRLKNLYSFDKKLYGYCSVLRFFKNLDFKYCGKVHEQPMYKNPIFNNI
ADFEHYGYLFEDEEIRINKVKRNEKLLLEELKEDEKSPYTNYQIGKNLIILGKYQEALDYLEKSYKLYSKLEIVPGYLIT
NLAKVYLYLGKAKKCEKLCLKYINKDRNNIDIYYHIAQAQVDLGKYENSIDSYKRYIYLLDNYEMSTQANSLLSDTDAVG
FRDEAIITLIKIYYKLEKYDLVISEYDNIEDVEKKKNVYFSLFMSLYKLNRFEDIKNYYREIPNSKVERDSFYKSMEDFI
NNIKDDEKELIYKSLCDIEGNYGLLNKIRINKHVSLDTCRKILNEEKDIVYASVIKIAFEEKVDLLDIFYNMEYVWIEKY
LRYILALERSFNVSIYKYIISCPNTSEIEKIRVYKVISKILLESVNLSDKKYKELFYIYIMYSYKYIKYIYSNLSDCELI
KFVCNDIDKFTLEFKHVLDGKRKINNPNEKLEYLHNMRILLNEYPFYNRIIKIFISELEESITESEEFKLLKDNFIIRIE
NMIENGKINDAKLLIEDYSKTFADDVKILNIKAILFMCEDKFEEADFALKKALSLDLENEDTIYNIEYLENLK

Sequences:

>Translated_713_residues
MLLSIVMMVKNEENILEKTLKSLSVLRNSIESELIIVDTGSTDNTIRIAKQYTEKVYFHNWNDDFSSMRNISISYAKGEW
LLILDADEVLIDYSNIIKFFESGLNKKFNSASVRLKNLYSFDKKLYGYCSVLRFFKNLDFKYCGKVHEQPMYKNPIFNNI
ADFEHYGYLFEDEEIRINKVKRNEKLLLEELKEDEKSPYTNYQIGKNLIILGKYQEALDYLEKSYKLYSKLEIVPGYLIT
NLAKVYLYLGKAKKCEKLCLKYINKDRNNIDIYYHIAQAQVDLGKYENSIDSYKRYIYLLDNYEMSTQANSLLSDTDAVG
FRDEAIITLIKIYYKLEKYDLVISEYDNIEDVEKKKNVYFSLFMSLYKLNRFEDIKNYYREIPNSKVERDSFYKSMEDFI
NNIKDDEKELIYKSLCDIEGNYGLLNKIRINKHVSLDTCRKILNEEKDIVYASVIKIAFEEKVDLLDIFYNMEYVWIEKY
LRYILALERSFNVSIYKYIISCPNTSEIEKIRVYKVISKILLESVNLSDKKYKELFYIYIMYSYKYIKYIYSNLSDCELI
KFVCNDIDKFTLEFKHVLDGKRKINNPNEKLEYLHNMRILLNEYPFYNRIIKIFISELEESITESEEFKLLKDNFIIRIE
NMIENGKINDAKLLIEDYSKTFADDVKILNIKAILFMCEDKFEEADFALKKALSLDLENEDTIYNIEYLENLK
>Mature_713_residues
MLLSIVMMVKNEENILEKTLKSLSVLRNSIESELIIVDTGSTDNTIRIAKQYTEKVYFHNWNDDFSSMRNISISYAKGEW
LLILDADEVLIDYSNIIKFFESGLNKKFNSASVRLKNLYSFDKKLYGYCSVLRFFKNLDFKYCGKVHEQPMYKNPIFNNI
ADFEHYGYLFEDEEIRINKVKRNEKLLLEELKEDEKSPYTNYQIGKNLIILGKYQEALDYLEKSYKLYSKLEIVPGYLIT
NLAKVYLYLGKAKKCEKLCLKYINKDRNNIDIYYHIAQAQVDLGKYENSIDSYKRYIYLLDNYEMSTQANSLLSDTDAVG
FRDEAIITLIKIYYKLEKYDLVISEYDNIEDVEKKKNVYFSLFMSLYKLNRFEDIKNYYREIPNSKVERDSFYKSMEDFI
NNIKDDEKELIYKSLCDIEGNYGLLNKIRINKHVSLDTCRKILNEEKDIVYASVIKIAFEEKVDLLDIFYNMEYVWIEKY
LRYILALERSFNVSIYKYIISCPNTSEIEKIRVYKVISKILLESVNLSDKKYKELFYIYIMYSYKYIKYIYSNLSDCELI
KFVCNDIDKFTLEFKHVLDGKRKINNPNEKLEYLHNMRILLNEYPFYNRIIKIFISELEESITESEEFKLLKDNFIIRIE
NMIENGKINDAKLLIEDYSKTFADDVKILNIKAILFMCEDKFEEADFALKKALSLDLENEDTIYNIEYLENLK

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 85109; Mature: 85109

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS50293 TPR_REGION ; PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSIVMMVKNEENILEKTLKSLSVLRNSIESELIIVDTGSTDNTIRIAKQYTEKVYFHN
CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHEEEC
WNDDFSSMRNISISYAKGEWLLILDADEVLIDYSNIIKFFESGLNKKFNSASVRLKNLYS
CCCCHHHHHCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
FDKKLYGYCSVLRFFKNLDFKYCGKVHEQPMYKNPIFNNIADFEHYGYLFEDEEIRINKV
HHHHHHHHHHHHHHHHCCCHHHHCHHHCCCCCCCCCHHHHHHHHHCCCEEECCCEEEEHH
KRNEKLLLEELKEDEKSPYTNYQIGKNLIILGKYQEALDYLEKSYKLYSKLEIVPGYLIT
CCHHHHHHHHHHHHCCCCCCCEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHH
NLAKVYLYLGKAKKCEKLCLKYINKDRNNIDIYYHIAQAQVDLGKYENSIDSYKRYIYLL
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEE
DNYEMSTQANSLLSDTDAVGFRDEAIITLIKIYYKLEKYDLVISEYDNIEDVEKKKNVYF
ECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHH
SLFMSLYKLNRFEDIKNYYREIPNSKVERDSFYKSMEDFINNIKDDEKELIYKSLCDIEG
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
NYGLLNKIRINKHVSLDTCRKILNEEKDIVYASVIKIAFEEKVDLLDIFYNMEYVWIEKY
CCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
LRYILALERSFNVSIYKYIISCPNTSEIEKIRVYKVISKILLESVNLSDKKYKELFYIYI
HHHHHHHHCCCCCEEEEHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
MYSYKYIKYIYSNLSDCELIKFVCNDIDKFTLEFKHVLDGKRKINNPNEKLEYLHNMRIL
HHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHH
LNEYPFYNRIIKIFISELEESITESEEFKLLKDNFIIRIENMIENGKINDAKLLIEDYSK
HHCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCEEEEEEHHHCCCCCCHHHHHHHHHHH
TFADDVKILNIKAILFMCEDKFEEADFALKKALSLDLENEDTIYNIEYLENLK
HHHCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCC
>Mature Secondary Structure
MLLSIVMMVKNEENILEKTLKSLSVLRNSIESELIIVDTGSTDNTIRIAKQYTEKVYFHN
CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHEEEC
WNDDFSSMRNISISYAKGEWLLILDADEVLIDYSNIIKFFESGLNKKFNSASVRLKNLYS
CCCCHHHHHCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
FDKKLYGYCSVLRFFKNLDFKYCGKVHEQPMYKNPIFNNIADFEHYGYLFEDEEIRINKV
HHHHHHHHHHHHHHHHCCCHHHHCHHHCCCCCCCCCHHHHHHHHHCCCEEECCCEEEEHH
KRNEKLLLEELKEDEKSPYTNYQIGKNLIILGKYQEALDYLEKSYKLYSKLEIVPGYLIT
CCHHHHHHHHHHHHCCCCCCCEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHH
NLAKVYLYLGKAKKCEKLCLKYINKDRNNIDIYYHIAQAQVDLGKYENSIDSYKRYIYLL
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEE
DNYEMSTQANSLLSDTDAVGFRDEAIITLIKIYYKLEKYDLVISEYDNIEDVEKKKNVYF
ECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHH
SLFMSLYKLNRFEDIKNYYREIPNSKVERDSFYKSMEDFINNIKDDEKELIYKSLCDIEG
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
NYGLLNKIRINKHVSLDTCRKILNEEKDIVYASVIKIAFEEKVDLLDIFYNMEYVWIEKY
CCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
LRYILALERSFNVSIYKYIISCPNTSEIEKIRVYKVISKILLESVNLSDKKYKELFYIYI
HHHHHHHHCCCCCEEEEHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
MYSYKYIKYIYSNLSDCELIKFVCNDIDKFTLEFKHVLDGKRKINNPNEKLEYLHNMRIL
HHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHH
LNEYPFYNRIIKIFISELEESITESEEFKLLKDNFIIRIENMIENGKINDAKLLIEDYSK
HHCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCEEEEEEHHHCCCCCCHHHHHHHHHHH
TFADDVKILNIKAILFMCEDKFEEADFALKKALSLDLENEDTIYNIEYLENLK
HHHCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9579063 [H]