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The map label for this gene is csrA

Identifier: 126697805

GI number: 126697805

Start: 297973

End: 298185

Strand: Direct

Name: csrA

Synonym: CD0234

Alternate gene names: 126697805

Gene position: 297973-298185 (Clockwise)

Preceding gene: 126697804

Following gene: 126697806

Centisome position: 6.95

GC content: 22.54

Gene sequence:

>213_bases
ATGCTAGTAATTTCGAGAAAAAAAGATGAAGCAGTACTTATAGGAGATAACATAGAAGTAAAAGTTGTAGGAGTGGATGG
AAATAACATAAAATTAGCTATATCTGCTCCTAATAATATAAGTATCTTAAGAAAAGAAATATATGAAAAAGTAAAAAATG
AAAATATAAAAGCCACAAATAAAAATATAAAAATCTTAAAATCATTAAAATAA

Upstream 100 bases:

>100_bases
CTCCTATAGTAATAAATGTAAGAAATAATTGCGGAATGCAAATAATTTTACAGGATGAGGAATATTCAATATGGCATCCA
TTATTGAGAGGTGATGGTGG

Downstream 100 bases:

>100_bases
AACACTTGGAGGAAGTAATATATGTACGGAGAAAATCCTTATAATTCTTATAAGCAAAATGCTATTTTTATGGCGTCAAA
AGAACAATTATTGCTTATGC

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 70

Protein sequence:

>70_residues
MLVISRKKDEAVLIGDNIEVKVVGVDGNNIKLAISAPNNISILRKEIYEKVKNENIKATNKNIKILKSLK

Sequences:

>Translated_70_residues
MLVISRKKDEAVLIGDNIEVKVVGVDGNNIKLAISAPNNISILRKEIYEKVKNENIKATNKNIKILKSLK
>Mature_70_residues
MLVISRKKDEAVLIGDNIEVKVVGVDGNNIKLAISAPNNISILRKEIYEKVKNENIKATNKNIKILKSLK

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_CLOD6 (Q18CX3)

Other databases:

- EMBL:   AM180355
- RefSeq:   YP_001086702.1
- ProteinModelPortal:   Q18CX3
- SMR:   Q18CX3
- STRING:   Q18CX3
- GeneID:   4916752
- GenomeReviews:   AM180355_GR
- KEGG:   cdf:CD0234
- NMPDR:   fig|1496.1.peg.1429
- eggNOG:   COG1551
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- ProtClustDB:   CLSK2534430
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 7800; Mature: 7800

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVISRKKDEAVLIGDNIEVKVVGVDGNNIKLAISAPNNISILRKEIYEKVKNENIKATN
CEEEECCCCCEEEECCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEECC
KNIKILKSLK
CCEEEEEECC
>Mature Secondary Structure
MLVISRKKDEAVLIGDNIEVKVVGVDGNNIKLAISAPNNISILRKEIYEKVKNENIKATN
CEEEECCCCCEEEECCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEECC
KNIKILKSLK
CCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA