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The map label for this gene is lytT [H]

Identifier: 126697730

GI number: 126697730

Start: 211074

End: 211787

Strand: Direct

Name: lytT [H]

Synonym: CD0160

Alternate gene names: 126697730

Gene position: 211074-211787 (Clockwise)

Preceding gene: 126697729

Following gene: 126697731

Centisome position: 4.92

GC content: 21.29

Gene sequence:

>714_bases
ATGATTAATATTATTATTTGCGAAGGTAAAAAATCAGAGAGGGTAATTCTAAATGATTATATAAATACCTTTTTTTATAA
TTACAATTTTGAATACAATATCAAAGAGTTTGAAAATGGAGGCGATTTATTAAAAAAGTATCCTAATAATGTTGATATCA
TATTTATGGATATAGACTTAAATGATGAAAATGGATTTAATGTTTCAAAAGAAATCAAAAAATTTGATGAAAGTGTAAGA
ATTATATTTGTATCCTCATCAAATAAATACATAAAGAAAGGTTATGAGATAGGAGTTTATAGATATTTAGAGAAGCCCTT
AAAATACTCTCTATTTAAAGAAGCAATATCATCATATTTAAAAGAATGCTACAAAAATGAAGCTATTTTATCTATAAAAT
GTAAATGCAAGATATATTTCATAAAGGTAGATGATATTTTATATTTAGAAGTTTTAAAAAATGATTTAACTATACATACT
GAAAAAGGAATATATACTTTTAAGAGTAGTATGAAAGAAATAGAATCAAATCTAGAAGAACATAATTTTTTTAGATGTCA
TAAAAGCTACCTTATAAATTTAATGAAGGTAAATATGCTAGATATAGAAAATAATATTGTATTTATAAATCAAAATTCAA
TAATTGTAAGTCGTTATAAGATAAAATTATTGAGAGAAAAGTTAAATAGTTGTTTGGTAGATGTAATAATTTGA

Upstream 100 bases:

>100_bases
AAAAATTTTGTATTAAAAAATATCTTTAAATTTGAAATATAATAAATGTTAGATAGAATTTTATAAAATTTAAAATAAAA
AATTATATAAGGGGTGTAAT

Downstream 100 bases:

>100_bases
GGTAAATTTTTGCCTTTATATTCTATTCTAATAGAATATATCTATTGTAAAATATGAAAAAATTTATAATAAAAACTAAT
TATAGTTAAAAATATACCTT

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MINIIICEGKKSERVILNDYINTFFYNYNFEYNIKEFENGGDLLKKYPNNVDIIFMDIDLNDENGFNVSKEIKKFDESVR
IIFVSSSNKYIKKGYEIGVYRYLEKPLKYSLFKEAISSYLKECYKNEAILSIKCKCKIYFIKVDDILYLEVLKNDLTIHT
EKGIYTFKSSMKEIESNLEEHNFFRCHKSYLINLMKVNMLDIENNIVFINQNSIIVSRYKIKLLREKLNSCLVDVII

Sequences:

>Translated_237_residues
MINIIICEGKKSERVILNDYINTFFYNYNFEYNIKEFENGGDLLKKYPNNVDIIFMDIDLNDENGFNVSKEIKKFDESVR
IIFVSSSNKYIKKGYEIGVYRYLEKPLKYSLFKEAISSYLKECYKNEAILSIKCKCKIYFIKVDDILYLEVLKNDLTIHT
EKGIYTFKSSMKEIESNLEEHNFFRCHKSYLINLMKVNMLDIENNIVFINQNSIIVSRYKIKLLREKLNSCLVDVII
>Mature_237_residues
MINIIICEGKKSERVILNDYINTFFYNYNFEYNIKEFENGGDLLKKYPNNVDIIFMDIDLNDENGFNVSKEIKKFDESVR
IIFVSSSNKYIKKGYEIGVYRYLEKPLKYSLFKEAISSYLKECYKNEAILSIKCKCKIYFIKVDDILYLEVLKNDLTIHT
EKGIYTFKSSMKEIESNLEEHNFFRCHKSYLINLMKVNMLDIENNIVFINQNSIIVSRYKIKLLREKLNSCLVDVII

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=216, Percent_Identity=23.6111111111111, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28172; Mature: 28172

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINIIICEGKKSERVILNDYINTFFYNYNFEYNIKEFENGGDLLKKYPNNVDIIFMDIDL
CEEEEEECCCCCCEEEHHHHHHHEEEEEEEEEEHHCCCCCCHHHHHCCCCEEEEEEEEEE
NDENGFNVSKEIKKFDESVRIIFVSSSNKYIKKGYEIGVYRYLEKPLKYSLFKEAISSYL
CCCCCCCHHHHHHHCCCCEEEEEEECCCCHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHH
KECYKNEAILSIKCKCKIYFIKVDDILYLEVLKNDLTIHTEKGIYTFKSSMKEIESNLEE
HHHHCCCCEEEEEEEEEEEEEEECCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHH
HNFFRCHKSYLINLMKVNMLDIENNIVFINQNSIIVSRYKIKLLREKLNSCLVDVII
HHHHHHHHHHHHEEEEEEEEEECCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MINIIICEGKKSERVILNDYINTFFYNYNFEYNIKEFENGGDLLKKYPNNVDIIFMDIDL
CEEEEEECCCCCCEEEHHHHHHHEEEEEEEEEEHHCCCCCCHHHHHCCCCEEEEEEEEEE
NDENGFNVSKEIKKFDESVRIIFVSSSNKYIKKGYEIGVYRYLEKPLKYSLFKEAISSYL
CCCCCCCHHHHHHHCCCCEEEEEEECCCCHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHH
KECYKNEAILSIKCKCKIYFIKVDDILYLEVLKNDLTIHTEKGIYTFKSSMKEIESNLEE
HHHHCCCCEEEEEEEEEEEEEEECCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHH
HNFFRCHKSYLINLMKVNMLDIENNIVFINQNSIIVSRYKIKLLREKLNSCLVDVII
HHHHHHHHHHHHEEEEEEEEEECCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]