| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is vorB [H]
Identifier: 126697688
GI number: 126697688
Start: 159211
End: 160290
Strand: Direct
Name: vorB [H]
Synonym: CD0116
Alternate gene names: 126697688
Gene position: 159211-160290 (Clockwise)
Preceding gene: 126697687
Following gene: 126697689
Centisome position: 3.71
GC content: 37.87
Gene sequence:
>1080_bases ATGGCTAAGATACTTATGAAAGGTAACGAAGCATTTGGAAAAGCAGCTATAGAAGCTGGTTGCAAATATTTCTTCGGTTA CCCAATAACTCCACAAAGTGAATTACCAGAATATTTATCAAGAGAGTTACCTAAAATAGGTGGAGCGTTCGTTCAAGCTG AATCAGAAGTTTCTGCGATAAACATGGTTTATGGTGGAGCAGGTGCAGGAGCAAGAGTTATGACTTCTTCATCTTCACCA GGAGTTGCTTTAAAGCAAGAAGGTATAACATATGCAGTAGGAGCAGAAGTTCCTTGTGTTGTACTTAATGTAATGAGAGG TGGTCCAGGACTTGGAAGTATACAACCTTCACAAGCTGACTACTTTATGTCTACAAGAGGTGGAGGAAATGGAGACTACA GAACTCCAGTATTCGCACCAGCTACAGTTCAAGAAGCTGTTGATATGATAATGGAAGCTTTTGACGTTGCAGATTATTAC AGATCACCAGTTATGGTAGTTGCAGATGGTATGATAGGTCAAATGATGGAGCCAGTTGAATTTAGAGCTCCTGAGAAGAA AAGAGAATTGCCTCCTAAAGATTGGGCAACTGTTGGAACTAAAGGAAAAAGAAAACCTAATGTAATAAACTCTCTATACT TAGAGCCAGAAGTACTAGAAGACCATTGTTGGCATTTACAAGAAAAATTTGATGCAATGGAAAAGAATGAAGTACAATAC GAAATGTACAAAACAGAAGATGCTGAATTTGTATTTGCAGCTTATGGAACTACTTCAAGAGTAGTAAAAAGCGCAATTGA TATATTAAGAGAAGAAGGAATAAAAGCAGGTCTTATAAGACCTAAAGTATTATGGCCATTCCCATTCGAAGCATTCAACC AAATTCCTAATGCTAGAAACATATTGACTGTTGAAATGAGTATGGGACAAATGGTGGAAGATGTTAAAATGGCAGTAGAA GGTAAATTACCAGTTTACTTCCATGGAAGACCAGGAGGAATGACTCCAACACCAGCAGAAATAGTTGAAAAAGCTAAAAA AATTATTGCCGGAGAATTGGTTGCAGGAGGTGCTAGATAA
Upstream 100 bases:
>100_bases GAAAAATGCATAGGATGTGCAAGTTGTGCAACTATGTGTCCAGATGTAGTTATAACAGTAGAAAGAGATTAATTTAATTA ATATTTAAGGGGGAATTTTA
Downstream 100 bases:
>100_bases TGGCTGTTGTATTTAAGAAAACTGAAGGATTACAAGATACTCAAACTCACTACTGTCCAGGATGTACACATGGTATAATC CATAGATTAGTTGGTGAAGT
Product: 2-ketoisovalerate ferredoxin reductase
Products: NA
Alternate protein names: VOR; 2-oxoisovalerate ferredoxin reductase subunit beta; 2-oxoisovalerate oxidoreductase beta chain [H]
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MAKILMKGNEAFGKAAIEAGCKYFFGYPITPQSELPEYLSRELPKIGGAFVQAESEVSAINMVYGGAGAGARVMTSSSSP GVALKQEGITYAVGAEVPCVVLNVMRGGPGLGSIQPSQADYFMSTRGGGNGDYRTPVFAPATVQEAVDMIMEAFDVADYY RSPVMVVADGMIGQMMEPVEFRAPEKKRELPPKDWATVGTKGKRKPNVINSLYLEPEVLEDHCWHLQEKFDAMEKNEVQY EMYKTEDAEFVFAAYGTTSRVVKSAIDILREEGIKAGLIRPKVLWPFPFEAFNQIPNARNILTVEMSMGQMVEDVKMAVE GKLPVYFHGRPGGMTPTPAEIVEKAKKIIAGELVAGGAR
Sequences:
>Translated_359_residues MAKILMKGNEAFGKAAIEAGCKYFFGYPITPQSELPEYLSRELPKIGGAFVQAESEVSAINMVYGGAGAGARVMTSSSSP GVALKQEGITYAVGAEVPCVVLNVMRGGPGLGSIQPSQADYFMSTRGGGNGDYRTPVFAPATVQEAVDMIMEAFDVADYY RSPVMVVADGMIGQMMEPVEFRAPEKKRELPPKDWATVGTKGKRKPNVINSLYLEPEVLEDHCWHLQEKFDAMEKNEVQY EMYKTEDAEFVFAAYGTTSRVVKSAIDILREEGIKAGLIRPKVLWPFPFEAFNQIPNARNILTVEMSMGQMVEDVKMAVE GKLPVYFHGRPGGMTPTPAEIVEKAKKIIAGELVAGGAR >Mature_358_residues AKILMKGNEAFGKAAIEAGCKYFFGYPITPQSELPEYLSRELPKIGGAFVQAESEVSAINMVYGGAGAGARVMTSSSSPG VALKQEGITYAVGAEVPCVVLNVMRGGPGLGSIQPSQADYFMSTRGGGNGDYRTPVFAPATVQEAVDMIMEAFDVADYYR SPVMVVADGMIGQMMEPVEFRAPEKKRELPPKDWATVGTKGKRKPNVINSLYLEPEVLEDHCWHLQEKFDAMEKNEVQYE MYKTEDAEFVFAAYGTTSRVVKSAIDILREEGIKAGLIRPKVLWPFPFEAFNQIPNARNILTVEMSMGQMVEDVKMAVEG KLPVYFHGRPGGMTPTPAEIVEKAKKIIAGELVAGGAR
Specific function: Unknown
COG id: COG0674
COG function: function code C; Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002880 - InterPro: IPR009014 - InterPro: IPR015941 [H]
Pfam domain/function: PF01855 POR_N [H]
EC number: =1.2.7.7 [H]
Molecular weight: Translated: 39145; Mature: 39013
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKILMKGNEAFGKAAIEAGCKYFFGYPITPQSELPEYLSRELPKIGGAFVQAESEVSAI CCEEEECCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCHHEEE NMVYGGAGAGARVMTSSSSPGVALKQEGITYAVGAEVPCVVLNVMRGGPGLGSIQPSQAD EEEECCCCCCCEEEECCCCCCEEEECCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCC YFMSTRGGGNGDYRTPVFAPATVQEAVDMIMEAFDVADYYRSPVMVVADGMIGQMMEPVE EEEECCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCHH FRAPEKKRELPPKDWATVGTKGKRKPNVINSLYLEPEVLEDHCWHLQEKFDAMEKNEVQY HCCCHHHCCCCCCHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEE EMYKTEDAEFVFAAYGTTSRVVKSAIDILREEGIKAGLIRPKVLWPFPFEAFNQIPNARN EEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHCCCCCC ILTVEMSMGQMVEDVKMAVEGKLPVYFHGRPGGMTPTPAEIVEKAKKIIAGELVAGGAR EEEEEECHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AKILMKGNEAFGKAAIEAGCKYFFGYPITPQSELPEYLSRELPKIGGAFVQAESEVSAI CEEEECCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCHHEEE NMVYGGAGAGARVMTSSSSPGVALKQEGITYAVGAEVPCVVLNVMRGGPGLGSIQPSQAD EEEECCCCCCCEEEECCCCCCEEEECCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCC YFMSTRGGGNGDYRTPVFAPATVQEAVDMIMEAFDVADYYRSPVMVVADGMIGQMMEPVE EEEECCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCHH FRAPEKKRELPPKDWATVGTKGKRKPNVINSLYLEPEVLEDHCWHLQEKFDAMEKNEVQY HCCCHHHCCCCCCHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEE EMYKTEDAEFVFAAYGTTSRVVKSAIDILREEGIKAGLIRPKVLWPFPFEAFNQIPNARN EEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHCCCCCC ILTVEMSMGQMVEDVKMAVEGKLPVYFHGRPGGMTPTPAEIVEKAKKIIAGELVAGGAR EEEEEECHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]