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The map label for this gene is xynB [H]

Identifier: 126697599

GI number: 126697599

Start: 53912

End: 55558

Strand: Direct

Name: xynB [H]

Synonym: CD0033

Alternate gene names: 126697599

Gene position: 53912-55558 (Clockwise)

Preceding gene: 126697598

Following gene: 126697600

Centisome position: 1.26

GC content: 31.75

Gene sequence:

>1647_bases
ATGATTAAAAACCCTATACTTCCAGGTTTTAATCCAGATCCTTGTATTTGTAGAAAGGGAGATGATTATTATCTTGTAGT
TTCATCTTTTGAATGGTTTCCAGGTATACCTGTTTATCACTCTAAAGACTTAAAAAATTGGGAGTTATATACTCATATTT
TGACAGATGAAACAAAAATAGATTTGAAGAAGCTTCCTTCATCTAAAGGAATTTGGGCACCTTGTTTGACTTATTGTGAA
GAAGAAGATTTATTTTACATAGTTTATGGAATTATGAACTCTATGAATGCAAGATATTTTGATGTTGATAATTATTTAAT
TACATCAAAAGATATAAAGGGAGAGTGGAGTGAACCAGTATATCTACACTCATCAGGTTTTGATGCGTCTATTTTTCATG
ATGATGATGGTAAAAAGTGGATTGCATCATTAGACTGGGAGACTAGAGAAGGATATGAAAAACCTGGTGTTATATGTTTA
GTGGAATACTGTACAAAAAAGAAAGAAATAGTAGGATATCCAAAGAGAATATGGTCAGGGGGAACTGATAGAGGTTGTAT
TGAAGCACCACATATAACAAAGCGTGGAGATTACTATTATATAATGTGTGCAGAAGGTGGAACTGGATATGGTCATAGTG
TAACTATGGGAAGGGCTAAAAATATATGGGGACCTTATGAAAAAGATTCAATGAATCCAATTGTAACTTCAATTCCAGGC
GATTTTTATGAAAGACATGACCCTGACCATCTAAAGCCTAAATATTATAACCCAGAATCAAAACTTCAAAAATCTGGTCA
TGGAAGCTATATAGAAACAACATCAGGTGAAGTATATTTAGTTCATCTAACATCTAGACCATTTGTACCAGAGTTAAGGT
GTACTTTAGGTAGAGAAACAGCTATTCAAAAAATGAAATGGACAAAGGATAATTGGCTTCGAATGGAAGATGAAAGTAAT
TTGGCAAAAGAATACGTATCAGAAAGTAAACTAGAAGAACATTTAGTTTCATCTATACCAAGTTTTGATGACTTTGATTC
AAATGAATTAGGTTTACAGTACTATGCTCCTAGGATTTCACCATTATCATTTGCAGATGTTAAGTCTAGACCAGGATATG
TAAGGATTAGAGGACAAGAATCAAGAACATCATTAAATAAAGTAAGCATATTGGCAAGAAAATTAACTTCAGTATATGCA
AGAATAACCACTAAGATGGAGTTTTACCCAGAGGTACATCAGCATAGTGCGGGTTTGATAATGTATTATGATAATATGAA
TTATATAAATTTAAGAAAGTATTATAGTGAAACATTGGGTCAAAGTGCACTATCAATAATACATCTTGAAAATGGAGAGA
AGACGGAATTTTTAAATACTAGGATACCAATAAAAGATATACCAATATATCTTCGTCTGTATATACAAGGTCGTAAGTCA
TATTTTGAATGGAGTTATGATGAAAAAAACTACCAAAGAATAGGAAAGGTATTTGATACAACTAAGTTTTCAGATGAGTA
CTGTAAATATGGAGAATTTACAGGTACGTTTATAGGATTAACTTGTGCAGATCGTGTAAAGCATAAACACTATGCTGATT
TTGATTTTTTTGAATATATAGTAGATGAATCAAAAGATGTCGATTAA

Upstream 100 bases:

>100_bases
TGAAGAAGGTTGGATAGGATGGGATAGTTGGGACCTAGGCAAATGTGTAGCTCAAGAATGGTATCCTATAGAATATTAAA
CTAAAATTGGAGGAAAAGAT

Downstream 100 bases:

>100_bases
TAAAATCATTACTAAAATTTTCAGAGCAAAGGTAAATCTTATGCTCTGAAATAAGAAACATTAGAAGGCAAATCTTACAA
AAAGGAGTATGGTATTATGA

Product: beta-xylosidase

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 548; Mature: 548

Protein sequence:

>548_residues
MIKNPILPGFNPDPCICRKGDDYYLVVSSFEWFPGIPVYHSKDLKNWELYTHILTDETKIDLKKLPSSKGIWAPCLTYCE
EEDLFYIVYGIMNSMNARYFDVDNYLITSKDIKGEWSEPVYLHSSGFDASIFHDDDGKKWIASLDWETREGYEKPGVICL
VEYCTKKKEIVGYPKRIWSGGTDRGCIEAPHITKRGDYYYIMCAEGGTGYGHSVTMGRAKNIWGPYEKDSMNPIVTSIPG
DFYERHDPDHLKPKYYNPESKLQKSGHGSYIETTSGEVYLVHLTSRPFVPELRCTLGRETAIQKMKWTKDNWLRMEDESN
LAKEYVSESKLEEHLVSSIPSFDDFDSNELGLQYYAPRISPLSFADVKSRPGYVRIRGQESRTSLNKVSILARKLTSVYA
RITTKMEFYPEVHQHSAGLIMYYDNMNYINLRKYYSETLGQSALSIIHLENGEKTEFLNTRIPIKDIPIYLRLYIQGRKS
YFEWSYDEKNYQRIGKVFDTTKFSDEYCKYGEFTGTFIGLTCADRVKHKHYADFDFFEYIVDESKDVD

Sequences:

>Translated_548_residues
MIKNPILPGFNPDPCICRKGDDYYLVVSSFEWFPGIPVYHSKDLKNWELYTHILTDETKIDLKKLPSSKGIWAPCLTYCE
EEDLFYIVYGIMNSMNARYFDVDNYLITSKDIKGEWSEPVYLHSSGFDASIFHDDDGKKWIASLDWETREGYEKPGVICL
VEYCTKKKEIVGYPKRIWSGGTDRGCIEAPHITKRGDYYYIMCAEGGTGYGHSVTMGRAKNIWGPYEKDSMNPIVTSIPG
DFYERHDPDHLKPKYYNPESKLQKSGHGSYIETTSGEVYLVHLTSRPFVPELRCTLGRETAIQKMKWTKDNWLRMEDESN
LAKEYVSESKLEEHLVSSIPSFDDFDSNELGLQYYAPRISPLSFADVKSRPGYVRIRGQESRTSLNKVSILARKLTSVYA
RITTKMEFYPEVHQHSAGLIMYYDNMNYINLRKYYSETLGQSALSIIHLENGEKTEFLNTRIPIKDIPIYLRLYIQGRKS
YFEWSYDEKNYQRIGKVFDTTKFSDEYCKYGEFTGTFIGLTCADRVKHKHYADFDFFEYIVDESKDVD
>Mature_548_residues
MIKNPILPGFNPDPCICRKGDDYYLVVSSFEWFPGIPVYHSKDLKNWELYTHILTDETKIDLKKLPSSKGIWAPCLTYCE
EEDLFYIVYGIMNSMNARYFDVDNYLITSKDIKGEWSEPVYLHSSGFDASIFHDDDGKKWIASLDWETREGYEKPGVICL
VEYCTKKKEIVGYPKRIWSGGTDRGCIEAPHITKRGDYYYIMCAEGGTGYGHSVTMGRAKNIWGPYEKDSMNPIVTSIPG
DFYERHDPDHLKPKYYNPESKLQKSGHGSYIETTSGEVYLVHLTSRPFVPELRCTLGRETAIQKMKWTKDNWLRMEDESN
LAKEYVSESKLEEHLVSSIPSFDDFDSNELGLQYYAPRISPLSFADVKSRPGYVRIRGQESRTSLNKVSILARKLTSVYA
RITTKMEFYPEVHQHSAGLIMYYDNMNYINLRKYYSETLGQSALSIIHLENGEKTEFLNTRIPIKDIPIYLRLYIQGRKS
YFEWSYDEKNYQRIGKVFDTTKFSDEYCKYGEFTGTFIGLTCADRVKHKHYADFDFFEYIVDESKDVD

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=556, Percent_Identity=35.9712230215827, Blast_Score=328, Evalue=5e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 63764; Mature: 63764

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKNPILPGFNPDPCICRKGDDYYLVVSSFEWFPGIPVYHSKDLKNWELYTHILTDETKI
CCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCEECCCCCCCEEEEEEECCCCEE
DLKKLPSSKGIWAPCLTYCEEEDLFYIVYGIMNSMNARYFDVDNYLITSKDIKGEWSEPV
HHHHCCCCCCCHHHHHHHCCCCCEEEEEEHHHHCCCCEEEECCCEEEECCCCCCCCCCCE
YLHSSGFDASIFHDDDGKKWIASLDWETREGYEKPGVICLVEYCTKKKEIVGYPKRIWSG
EEECCCCCEEEEECCCCCEEEEECCCHHHCCCCCCCEEEEEHHHCCCHHHCCCCHHHHCC
GTDRGCIEAPHITKRGDYYYIMCAEGGTGYGHSVTMGRAKNIWGPYEKDSMNPIVTSIPG
CCCCCCEECCCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCC
DFYERHDPDHLKPKYYNPESKLQKSGHGSYIETTSGEVYLVHLTSRPFVPELRCTLGRET
HHHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCHHHHHCCHHH
AIQKMKWTKDNWLRMEDESNLAKEYVSESKLEEHLVSSIPSFDDFDSNELGLQYYAPRIS
HHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCC
PLSFADVKSRPGYVRIRGQESRTSLNKVSILARKLTSVYARITTKMEFYPEVHQHSAGLI
CCEEHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEE
MYYDNMNYINLRKYYSETLGQSALSIIHLENGEKTEFLNTRIPIKDIPIYLRLYIQGRKS
EEECCCCEEEHHHHHHHHHCHHEEEEEEECCCCCEEEEECCCCHHHCCEEEEEEEECCCC
YFEWSYDEKNYQRIGKVFDTTKFSDEYCKYGEFTGTFIGLTCADRVKHKHYADFDFFEYI
EEECCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEEEEHHHHHHCCCCCHHHHHHH
VDESKDVD
HCCCCCCC
>Mature Secondary Structure
MIKNPILPGFNPDPCICRKGDDYYLVVSSFEWFPGIPVYHSKDLKNWELYTHILTDETKI
CCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCEECCCCCCCEEEEEEECCCCEE
DLKKLPSSKGIWAPCLTYCEEEDLFYIVYGIMNSMNARYFDVDNYLITSKDIKGEWSEPV
HHHHCCCCCCCHHHHHHHCCCCCEEEEEEHHHHCCCCEEEECCCEEEECCCCCCCCCCCE
YLHSSGFDASIFHDDDGKKWIASLDWETREGYEKPGVICLVEYCTKKKEIVGYPKRIWSG
EEECCCCCEEEEECCCCCEEEEECCCHHHCCCCCCCEEEEEHHHCCCHHHCCCCHHHHCC
GTDRGCIEAPHITKRGDYYYIMCAEGGTGYGHSVTMGRAKNIWGPYEKDSMNPIVTSIPG
CCCCCCEECCCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCC
DFYERHDPDHLKPKYYNPESKLQKSGHGSYIETTSGEVYLVHLTSRPFVPELRCTLGRET
HHHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCHHHHHCCHHH
AIQKMKWTKDNWLRMEDESNLAKEYVSESKLEEHLVSSIPSFDDFDSNELGLQYYAPRIS
HHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCC
PLSFADVKSRPGYVRIRGQESRTSLNKVSILARKLTSVYARITTKMEFYPEVHQHSAGLI
CCEEHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEE
MYYDNMNYINLRKYYSETLGQSALSIIHLENGEKTEFLNTRIPIKDIPIYLRLYIQGRKS
EEECCCCEEEHHHHHHHHHCHHEEEEEEECCCCCEEEEECCCCHHHCCEEEEEEEECCCC
YFEWSYDEKNYQRIGKVFDTTKFSDEYCKYGEFTGTFIGLTCADRVKHKHYADFDFFEYI
EEECCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEEEEHHHHHHCCCCCHHHHHHH
VDESKDVD
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]