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The map label for this gene is algU [H]

Identifier: 126447920

GI number: 126447920

Start: 58084

End: 58791

Strand: Direct

Name: algU [H]

Synonym: BMA10247_A0073

Alternate gene names: 126447920

Gene position: 58084-58791 (Clockwise)

Preceding gene: 126446036

Following gene: 126447204

Centisome position: 2.47

GC content: 66.67

Gene sequence:

>708_bases
ATGACCCGAACGATGACGACCGAGCCGCGATCGGGCGACATGCAGCCTTCGCGCGTGGACGACCGCGCGCTGGCCGCGCG
GGTTGCCGGCGGCGATCATGCGGCATTCGAGCAATTGATGCGCCGCTACAACCGGCGCCTCTACCGGCTTGCGCGCGCGA
CGTTGCGCGACGACGCGCAAGCCGAAGACGTGCTTCAGGAGGCCTATCTGGCCGCATTTCGCACCATCGGGCGCTTTCGC
GGCGACGCATTGCTGTCCACCTGGCTGTCGCGCCTCGTGCTCAACGCTTGCTTTACGCGCCAGCGCCGGGGCGCCCGGCG
CGACAACATCGCCCCGATGGTGAATACATCGTCCATCGCCGGCTTCGAGCGCACTACCATGGATGCGGACCTAACCTCCT
CGCCCGATCATGCACTCATGCGCACGGAGCTGCGTGCATTGCTCGAGCGCAAGCTCGATGCGTTGCCCGAGGCTTTTCGC
CTCGTGTTCGTCCTGCGTTGCGTGGAGGAGTTGAGCGTCGAGGAGACCGCGCAGTGTCTCGGCATACCGGAGGCCACCGT
GCGATCGCGCCATTTTCGGGCGAAGCGCTTACTGCGCGAATCGCTCGCGCGGGAAATCGATTCGGCCGGGCGCGACGTGT
TCTCGTTCGCCGGCGAGCGCTGCGACCGCATCGTCCGCGGCGTACTGGCGAGGCTGATTTCGCCCTGA

Upstream 100 bases:

>100_bases
ACGCTTCATGGGCGTATGTCGCGCGCAGCCCCGGGCGCTTTGCGTACGTCTGCGCGCTTCACCCCACCATGAAGGCGAAT
CTGATCGTCAAGAGCAAGCG

Downstream 100 bases:

>100_bases
TTTCGGGCACGCGGGCGGCGCTTGCCGCGTGCCGCCGCGCCGCCGGCACCGCACGGCAAGCGTCGGCAGGCGCCTGGATC
GACTGGCGGCCCGACGTACC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MTRTMTTEPRSGDMQPSRVDDRALAARVAGGDHAAFEQLMRRYNRRLYRLARATLRDDAQAEDVLQEAYLAAFRTIGRFR
GDALLSTWLSRLVLNACFTRQRRGARRDNIAPMVNTSSIAGFERTTMDADLTSSPDHALMRTELRALLERKLDALPEAFR
LVFVLRCVEELSVEETAQCLGIPEATVRSRHFRAKRLLRESLAREIDSAGRDVFSFAGERCDRIVRGVLARLISP

Sequences:

>Translated_235_residues
MTRTMTTEPRSGDMQPSRVDDRALAARVAGGDHAAFEQLMRRYNRRLYRLARATLRDDAQAEDVLQEAYLAAFRTIGRFR
GDALLSTWLSRLVLNACFTRQRRGARRDNIAPMVNTSSIAGFERTTMDADLTSSPDHALMRTELRALLERKLDALPEAFR
LVFVLRCVEELSVEETAQCLGIPEATVRSRHFRAKRLLRESLAREIDSAGRDVFSFAGERCDRIVRGVLARLISP
>Mature_234_residues
TRTMTTEPRSGDMQPSRVDDRALAARVAGGDHAAFEQLMRRYNRRLYRLARATLRDDAQAEDVLQEAYLAAFRTIGRFRG
DALLSTWLSRLVLNACFTRQRRGARRDNIAPMVNTSSIAGFERTTMDADLTSSPDHALMRTELRALLERKLDALPEAFRL
VFVLRCVEELSVEETAQCLGIPEATVRSRHFRAKRLLRESLAREIDSAGRDVFSFAGERCDRIVRGVLARLISP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=177, Percent_Identity=33.8983050847458, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 26657; Mature: 26526

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTMTTEPRSGDMQPSRVDDRALAARVAGGDHAAFEQLMRRYNRRLYRLARATLRDDAQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
AEDVLQEAYLAAFRTIGRFRGDALLSTWLSRLVLNACFTRQRRGARRDNIAPMVNTSSIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHC
GFERTTMDADLTSSPDHALMRTELRALLERKLDALPEAFRLVFVLRCVEELSVEETAQCL
CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIPEATVRSRHFRAKRLLRESLAREIDSAGRDVFSFAGERCDRIVRGVLARLISP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRTMTTEPRSGDMQPSRVDDRALAARVAGGDHAAFEQLMRRYNRRLYRLARATLRDDAQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
AEDVLQEAYLAAFRTIGRFRGDALLSTWLSRLVLNACFTRQRRGARRDNIAPMVNTSSIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHC
GFERTTMDADLTSSPDHALMRTELRALLERKLDALPEAFRLVFVLRCVEELSVEETAQCL
CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIPEATVRSRHFRAKRLLRESLAREIDSAGRDVFSFAGERCDRIVRGVLARLISP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]