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The map label for this gene is ybfI [H]

Identifier: 126447882

GI number: 126447882

Start: 272391

End: 273245

Strand: Reverse

Name: ybfI [H]

Synonym: BMA10247_A0312

Alternate gene names: 126447882

Gene position: 273245-272391 (Counterclockwise)

Preceding gene: 126446257

Following gene: 126446227

Centisome position: 11.61

GC content: 64.8

Gene sequence:

>855_bases
TTGAACGATTGTGCACGCGACATCGCGCCCGACCGAGATCAAATTCGGATCGGATCCGGCGCCCCAGGCATCGAACGCGT
GGAGGCGCACTTCCTCGATCATGCGTTCACGCCGCATCGTCACGACACGTACGCGATCGGCATCACGCTCTCGGGCTTGC
AAACCTTCGGCTATCTCGGCGAAATCCACCACTGCCTGCCGGGACAGTGCCATATCCTGCACCCCGACGAGTTGCACGAC
GGCCGCGCGGGAACCGACGAAGGCTTCGGTTATCGAATCATCTACGTCGATCCCGCGCTCGTCCAGGAAGCGCTCGGCGG
CCGCATGCTGCCGTTCGTTCGCTCACCGATCTTCCAGGCACCCGCCGTTTCCGAGGCGCTCGCGGCCGGCATCTGGAACC
TGGACGAGGAAATCGACAACGTATCGCGCATCGACATCGCCGTCGCCGTCGCGAACCTGCTGACGGCCGCCGCCGCGAAG
GGCAGCGCGCCGAAAGCCGGCCCGCTCGCGATGGTCGAATTGACACGTATCCGCGATATCATCGCCTCCTGTCCGCACGA
GCCGATCTCGATGGACGCGCTCGAGCACGCATCGGGACTCGACCGCTGGACGATCGCCCGCCAGTTCCGACGGCTGTTCG
GCACGAGCCCGAGCCGCTTTCGCACGCAGCGACAGCTCAATCTCGTGCGTCGGCTATTGATGGAAGGCGAATCGCTGTCG
ACCGCCTCCACCGACGCGGGCTTTTCCGATCAGAGCCACATGTCGCGGCACTTCAAGAGTACTTACGGCATCACGCCGGG
TGCGTGGATTTCCGCCGTGCGCACCCGGCACGCGCAGCACCCGTCGGACCACTAA

Upstream 100 bases:

>100_bases
CGCAATGTCTCCGAAACAAGGTCGACTTGGTTTACCATCGAAGCTCCAGCGCGCCATCTTTTTTGAATGGGTAGCTTATG
GAAGCGTCAGGGAGGCTGTC

Downstream 100 bases:

>100_bases
ACACGTCCGACCGGACGGCGGCGAAACACCCTCGCGCCGCTTTCTTTCGATCGCCGTGCCCGCCCAACAGGCGGATATGG
CGTTCTGTCCCAGCGCTCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MNDCARDIAPDRDQIRIGSGAPGIERVEAHFLDHAFTPHRHDTYAIGITLSGLQTFGYLGEIHHCLPGQCHILHPDELHD
GRAGTDEGFGYRIIYVDPALVQEALGGRMLPFVRSPIFQAPAVSEALAAGIWNLDEEIDNVSRIDIAVAVANLLTAAAAK
GSAPKAGPLAMVELTRIRDIIASCPHEPISMDALEHASGLDRWTIARQFRRLFGTSPSRFRTQRQLNLVRRLLMEGESLS
TASTDAGFSDQSHMSRHFKSTYGITPGAWISAVRTRHAQHPSDH

Sequences:

>Translated_284_residues
MNDCARDIAPDRDQIRIGSGAPGIERVEAHFLDHAFTPHRHDTYAIGITLSGLQTFGYLGEIHHCLPGQCHILHPDELHD
GRAGTDEGFGYRIIYVDPALVQEALGGRMLPFVRSPIFQAPAVSEALAAGIWNLDEEIDNVSRIDIAVAVANLLTAAAAK
GSAPKAGPLAMVELTRIRDIIASCPHEPISMDALEHASGLDRWTIARQFRRLFGTSPSRFRTQRQLNLVRRLLMEGESLS
TASTDAGFSDQSHMSRHFKSTYGITPGAWISAVRTRHAQHPSDH
>Mature_284_residues
MNDCARDIAPDRDQIRIGSGAPGIERVEAHFLDHAFTPHRHDTYAIGITLSGLQTFGYLGEIHHCLPGQCHILHPDELHD
GRAGTDEGFGYRIIYVDPALVQEALGGRMLPFVRSPIFQAPAVSEALAAGIWNLDEEIDNVSRIDIAVAVANLLTAAAAK
GSAPKAGPLAMVELTRIRDIIASCPHEPISMDALEHASGLDRWTIARQFRRLFGTSPSRFRTQRQLNLVRRLLMEGESLS
TASTDAGFSDQSHMSRHFKSTYGITPGAWISAVRTRHAQHPSDH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31151; Mature: 31151

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDCARDIAPDRDQIRIGSGAPGIERVEAHFLDHAFTPHRHDTYAIGITLSGLQTFGYLG
CCCHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHH
EIHHCLPGQCHILHPDELHDGRAGTDEGFGYRIIYVDPALVQEALGGRMLPFVRSPIFQA
HHHHCCCCCEEEECCHHCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCHHHHCCCCCC
PAVSEALAAGIWNLDEEIDNVSRIDIAVAVANLLTAAAAKGSAPKAGPLAMVELTRIRDI
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
IASCPHEPISMDALEHASGLDRWTIARQFRRLFGTSPSRFRTQRQLNLVRRLLMEGESLS
HHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
TASTDAGFSDQSHMSRHFKSTYGITPGAWISAVRTRHAQHPSDH
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNDCARDIAPDRDQIRIGSGAPGIERVEAHFLDHAFTPHRHDTYAIGITLSGLQTFGYLG
CCCHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHH
EIHHCLPGQCHILHPDELHDGRAGTDEGFGYRIIYVDPALVQEALGGRMLPFVRSPIFQA
HHHHCCCCCEEEECCHHCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCHHHHCCCCCC
PAVSEALAAGIWNLDEEIDNVSRIDIAVAVANLLTAAAAKGSAPKAGPLAMVELTRIRDI
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
IASCPHEPISMDALEHASGLDRWTIARQFRRLFGTSPSRFRTQRQLNLVRRLLMEGESLS
HHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
TASTDAGFSDQSHMSRHFKSTYGITPGAWISAVRTRHAQHPSDH
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]