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The map label for this gene is rbsC [H]

Identifier: 126447860

GI number: 126447860

Start: 1726044

End: 1727096

Strand: Reverse

Name: rbsC [H]

Synonym: BMA10247_A1791

Alternate gene names: 126447860

Gene position: 1727096-1726044 (Counterclockwise)

Preceding gene: 126447826

Following gene: 126446504

Centisome position: 73.41

GC content: 69.71

Gene sequence:

>1053_bases
TTGCATCCATCGAAGGAGTCGACGCCCATGAAGTCTAGCCTGACGAGTCCCGCGCTGCCGCCGGGGCCGGCGCGCGTCGT
CGCGCGCAAGCCGTTCGAGATCGCGCGGCTGCGCGATCTCGCGTTGCTGCCCGCGCTCGTGCTGCTGATCGCGATCGGCG
CGTTCGTGAGCCCGAGCTTTCTGACGAAGGCGAACCTGATCAGCGTGCTCGGCGCGTCGGCCGCGCTCGCGCTCGTCGTG
CTCGCCGAATCGCTGATCGTGCTGACGGGCAAGTTCGATCTGTCGCTCGAATCGACGGTCGGCATCGCGCCCGCGATCGG
CGCGATGCTCGTGATGCCGGCATCGTCCGCCGGCTTCGGCTGGCAGTGGCCCGCCGCCGCGGGGCTGGCCGCGATCGTCG
CGATCGGCGCGCTGATCGGCTTCGTCAACGGTTTTCTCGTCGTGCGGATGCGGCTGAACGCGTTCATCGTCACGCTCGCG
ATGCTGATCGTGCTGCGTGGGATGCTCGTCGGCGCGACGAAGGGCGGCACGCTGTTCGACATGCCGCCGGCGTTCTTCGC
GCTCGCGACGACGGGCGTGTTCGGCCTGCCGCTGTCGGTATGGCTCGCGGCGGCCGTGTTCGGCTGGGCGGCGTTCATGC
TGCGCTATCACCGCCTCGGCCGCGCGCTGTATGCGATCGGCGGCAACGATCAGGCCGCGCGCGCGGCGGGGATTCGCGTC
GAACGGATCACGTGGGGCGTGTTCGTGCTCGGCAGCACGCTCGCGTCGATCGGCGGCCTCGTCGTCACGGGCTACGTCGG
CGCGATCAACGCGAATCAGGGCAACGGGATGATCTTCACGGTGTTCGCGGCCGCGGTGATCGGCGGCATCTCGCTCGACG
GCGGCAAGGGAACGATGCTCGGCGCGCTGACGGGCGTGCTGCTGCTCGGCGTCGTGCAGAACCTGCTCACGCTCGCGCAG
GTGCCGTCGTTCTGGATTCAGGCGATCTACGGCGTGATCATTCTCGGCGCGCTGATGGTCGCGCGCGTCGCGGGCGGCGA
GGGGCCGGCATGA

Upstream 100 bases:

>100_bases
GGCGAGCTCGACGATCTGCGCACCTGCGACCGCGTGCTCGTGATGTTCCGCGGGCGCATCGTCGCCGAATTTCAGGCCGG
CTGGCAGGACAACGAACTGA

Downstream 100 bases:

>100_bases
GCGCGCCCGCCATCGACGCGCGGCTGCTGCTGCTCTCGCCCGCCGACAATTGCCTGATCGCCGCGACGCGCCTGTGCGCG
GGGCAAGCAGTGACGATCGA

Product: carbohydrate ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MHPSKESTPMKSSLTSPALPPGPARVVARKPFEIARLRDLALLPALVLLIAIGAFVSPSFLTKANLISVLGASAALALVV
LAESLIVLTGKFDLSLESTVGIAPAIGAMLVMPASSAGFGWQWPAAAGLAAIVAIGALIGFVNGFLVVRMRLNAFIVTLA
MLIVLRGMLVGATKGGTLFDMPPAFFALATTGVFGLPLSVWLAAAVFGWAAFMLRYHRLGRALYAIGGNDQAARAAGIRV
ERITWGVFVLGSTLASIGGLVVTGYVGAINANQGNGMIFTVFAAAVIGGISLDGGKGTMLGALTGVLLLGVVQNLLTLAQ
VPSFWIQAIYGVIILGALMVARVAGGEGPA

Sequences:

>Translated_350_residues
MHPSKESTPMKSSLTSPALPPGPARVVARKPFEIARLRDLALLPALVLLIAIGAFVSPSFLTKANLISVLGASAALALVV
LAESLIVLTGKFDLSLESTVGIAPAIGAMLVMPASSAGFGWQWPAAAGLAAIVAIGALIGFVNGFLVVRMRLNAFIVTLA
MLIVLRGMLVGATKGGTLFDMPPAFFALATTGVFGLPLSVWLAAAVFGWAAFMLRYHRLGRALYAIGGNDQAARAAGIRV
ERITWGVFVLGSTLASIGGLVVTGYVGAINANQGNGMIFTVFAAAVIGGISLDGGKGTMLGALTGVLLLGVVQNLLTLAQ
VPSFWIQAIYGVIILGALMVARVAGGEGPA
>Mature_350_residues
MHPSKESTPMKSSLTSPALPPGPARVVARKPFEIARLRDLALLPALVLLIAIGAFVSPSFLTKANLISVLGASAALALVV
LAESLIVLTGKFDLSLESTVGIAPAIGAMLVMPASSAGFGWQWPAAAGLAAIVAIGALIGFVNGFLVVRMRLNAFIVTLA
MLIVLRGMLVGATKGGTLFDMPPAFFALATTGVFGLPLSVWLAAAVFGWAAFMLRYHRLGRALYAIGGNDQAARAAGIRV
ERITWGVFVLGSTLASIGGLVVTGYVGAINANQGNGMIFTVFAAAVIGGISLDGGKGTMLGALTGVLLLGVVQNLLTLAQ
VPSFWIQAIYGVIILGALMVARVAGGEGPA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=319, Percent_Identity=36.6771159874608, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI145693152, Length=322, Percent_Identity=32.6086956521739, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788896, Length=326, Percent_Identity=28.8343558282209, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1790524, Length=320, Percent_Identity=29.6875, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787793, Length=285, Percent_Identity=30.5263157894737, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1789992, Length=124, Percent_Identity=39.5161290322581, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082395, Length=306, Percent_Identity=28.1045751633987, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787794, Length=313, Percent_Identity=26.1980830670927, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788471, Length=260, Percent_Identity=28.4615384615385, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35760; Mature: 35760

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPSKESTPMKSSLTSPALPPGPARVVARKPFEIARLRDLALLPALVLLIAIGAFVSPSF
CCCCCCCCCCHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LTKANLISVLGASAALALVVLAESLIVLTGKFDLSLESTVGIAPAIGAMLVMPASSAGFG
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEHHHCCHHHHHHHHHEECCCCCCCC
WQWPAAAGLAAIVAIGALIGFVNGFLVVRMRLNAFIVTLAMLIVLRGMLVGATKGGTLFD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEC
MPPAFFALATTGVFGLPLSVWLAAAVFGWAAFMLRYHRLGRALYAIGGNDQAARAAGIRV
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHCCEE
ERITWGVFVLGSTLASIGGLVVTGYVGAINANQGNGMIFTVFAAAVIGGISLDGGKGTML
EHHHHHHHHHHHHHHHHCCEEEEHEEEEEECCCCCCEEHHHHHHHHHCCCEECCCCCHHH
GALTGVLLLGVVQNLLTLAQVPSFWIQAIYGVIILGALMVARVAGGEGPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MHPSKESTPMKSSLTSPALPPGPARVVARKPFEIARLRDLALLPALVLLIAIGAFVSPSF
CCCCCCCCCCHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LTKANLISVLGASAALALVVLAESLIVLTGKFDLSLESTVGIAPAIGAMLVMPASSAGFG
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEHHHCCHHHHHHHHHEECCCCCCCC
WQWPAAAGLAAIVAIGALIGFVNGFLVVRMRLNAFIVTLAMLIVLRGMLVGATKGGTLFD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEC
MPPAFFALATTGVFGLPLSVWLAAAVFGWAAFMLRYHRLGRALYAIGGNDQAARAAGIRV
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHCCEE
ERITWGVFVLGSTLASIGGLVVTGYVGAINANQGNGMIFTVFAAAVIGGISLDGGKGTML
EHHHHHHHHHHHHHHHHCCEEEEHEEEEEECCCCCCEEHHHHHHHHHCCCEECCCCCHHH
GALTGVLLLGVVQNLLTLAQVPSFWIQAIYGVIILGALMVARVAGGEGPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]