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The map label for this gene is fadE25 [H]

Identifier: 126447339

GI number: 126447339

Start: 1271837

End: 1273630

Strand: Reverse

Name: fadE25 [H]

Synonym: BMA10247_A1300

Alternate gene names: 126447339

Gene position: 1273630-1271837 (Counterclockwise)

Preceding gene: 126446687

Following gene: 126446110

Centisome position: 54.13

GC content: 72.91

Gene sequence:

>1794_bases
ATGAGCGCCGATGCGATCTTGACCGGGCGCGAGCGCGCGCACCGCCGCGTCGACGCGGCCGGGCCGCATGCCGATCTCGA
GCAAGCGCTCGGCGATCCGTTCGATGCGGCCAACCCGCTCGGGTACGCGCGCATTCTCGATGCCGACGAACGCGAAGCGC
TGTCCCCCGACGCGGAGGCCGTGCTCGAACGGTGGGGCATGAATGCCGAATTCGTGCCGGCGCGCCTCGGCGGGCGCTGG
GATAGCGTGACGGAGATGGTCAGGCGGCTGCGCCCCGTGTTTCGGCGCGACGCGGCGCTCGGCATCGGCCACGGCGTGTC
GTCGCTCGTCGCGGCCGTCGGCGTGTGGGCGGCGGGCTCGCCCGCCCAGCAGCGCGAACTGAGCGAGCTGCTGCTGCGCG
GCGGGAAGGTGTCGGCCGCGTATCACGAGCTCGATCACGGCAACGACTTCCTGCGCAACGCATTCGAAGCGTATCCGGGC
GCGGACGGCGCGCTCGTGCTGAACGGCACGAAGGAAGTCATCAACAACGCCGATCGTGCGCACGCGTGGGTGGTGTTCGC
CCGCACCGACGCGCGGGCGGGCGGACGCAGCCATTCGGTGCTGTTGCTCGATCGGGCCGCGCTTCAGCCGGCGATCGACG
CCGGCGAGCTGGAGATACTGCGTCGCCATCGGACGGCGGGCGTGCGCGGATGCCGCCTCGCCGGCCTGCGGTTCTCGCGC
TGCCGGGTGCCGGCCGAGCGGCTCGTCGCCGCGCGCGGCGCGGGCGTCGAGATTTCGCTGCGCGCGTTCCAGATCACGCG
CATCGCGCTGCCGGGCATGGCGATCGGCATGCTGGACACGGCGTTGCGCACGGTCGTCGCATTCGCGCGGGAACGCACGC
TGTACGGCACGCGGGTGATCGAGATGCCGTACGTGCGCGCGCTGCTGAGCGACGCGATGGCGGATCTGCTTGCCGCCGAT
TGCCTCGTGCGGGCCGCCGCTCGCGGGCTGCATCTCGCGCCGGCGCACGCGTGCGTGCACGCGGCGGCCGTCAAGTACCT
GGTGCCCCAGTTGCTTCGCGACAGCATGAACGTGTTGTCGGTCGTGCTCGGCGCGCGCGCTTACCTGCGCGGCGGGCGCC
ACGCGATCTTCGGCAAGATGATGCGGGACATGCCGATCGTCGGCCTCGCCCATGCGGGCGGCACCGCGTGCCTGCTCACG
GTGCTCTCGCAACTGCCGGCGCTCGCGCGGCGCGCCGCGCATCGCGCGCGCGACGCCGGTGCGCCGTTCGACGAACGTGT
CGCGCTGCCGCCGCTCGATTTCGATGCGTTGACGATCGCCGCGCATGGCGAGGACTGGCTGCTCGACGCCTTGCCGAACG
CGCTGGACGCATTCGAGGCGGCCGGCGAGCGCGCGACACCGCTCGCCCGCGCGGTGCGTCACGCGACGGCGGCGCTCGAT
GCGCTGCGCGCGTCGGCGAAACGGCTGCCGCCGAGCGAGACCGGCCCGGCGGTCCATCCCGAGAGCTTCGAGCTCGCACG
GCGCTACGCGGTGCTGGCGGCCGCGGCGGCATGCGTGGGCGTGTGGCGGGCCGAGCGCGCGCGCGCCGGCGCGTCGTTCG
TCGGCGCGCCCGCCTGGCTCGAAGCGGCGCTGTCTCGCCTGAGCGAGCGGCTCGGCATGCCGAAGCAGCCGGCGCCGCCG
CACGTATGCGATGCGATCGTATCGGAGCTCGTCGCGCGGGCCGACGAGCACCGCTCGTTTTGCCTATATCACGCCCGGTT
AAACGGAGGTGCCGATGTCCCAGCCAGTGTCTGA

Upstream 100 bases:

>100_bases
CGGGCGACGCATTATGGCGCGCGCTGCTGCGTCAGCATCGCGACGGCCTGCTGTTTTCGCTGCTGCCGTGCGAGCTTGCC
GAGCATCGAGGGGAGGCCGC

Downstream 100 bases:

>100_bases
GCCCACCCGCGTGCTCGATCCCGCGAGTGCGCACAGCGCGTCGATCGAGCTTTGGTTGATCGAGCGTATCGCGTGCTATC
TGCAGCGCGCGCCGCACGAG

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 597; Mature: 596

Protein sequence:

>597_residues
MSADAILTGRERAHRRVDAAGPHADLEQALGDPFDAANPLGYARILDADEREALSPDAEAVLERWGMNAEFVPARLGGRW
DSVTEMVRRLRPVFRRDAALGIGHGVSSLVAAVGVWAAGSPAQQRELSELLLRGGKVSAAYHELDHGNDFLRNAFEAYPG
ADGALVLNGTKEVINNADRAHAWVVFARTDARAGGRSHSVLLLDRAALQPAIDAGELEILRRHRTAGVRGCRLAGLRFSR
CRVPAERLVAARGAGVEISLRAFQITRIALPGMAIGMLDTALRTVVAFARERTLYGTRVIEMPYVRALLSDAMADLLAAD
CLVRAAARGLHLAPAHACVHAAAVKYLVPQLLRDSMNVLSVVLGARAYLRGGRHAIFGKMMRDMPIVGLAHAGGTACLLT
VLSQLPALARRAAHRARDAGAPFDERVALPPLDFDALTIAAHGEDWLLDALPNALDAFEAAGERATPLARAVRHATAALD
ALRASAKRLPPSETGPAVHPESFELARRYAVLAAAAACVGVWRAERARAGASFVGAPAWLEAALSRLSERLGMPKQPAPP
HVCDAIVSELVARADEHRSFCLYHARLNGGADVPASV

Sequences:

>Translated_597_residues
MSADAILTGRERAHRRVDAAGPHADLEQALGDPFDAANPLGYARILDADEREALSPDAEAVLERWGMNAEFVPARLGGRW
DSVTEMVRRLRPVFRRDAALGIGHGVSSLVAAVGVWAAGSPAQQRELSELLLRGGKVSAAYHELDHGNDFLRNAFEAYPG
ADGALVLNGTKEVINNADRAHAWVVFARTDARAGGRSHSVLLLDRAALQPAIDAGELEILRRHRTAGVRGCRLAGLRFSR
CRVPAERLVAARGAGVEISLRAFQITRIALPGMAIGMLDTALRTVVAFARERTLYGTRVIEMPYVRALLSDAMADLLAAD
CLVRAAARGLHLAPAHACVHAAAVKYLVPQLLRDSMNVLSVVLGARAYLRGGRHAIFGKMMRDMPIVGLAHAGGTACLLT
VLSQLPALARRAAHRARDAGAPFDERVALPPLDFDALTIAAHGEDWLLDALPNALDAFEAAGERATPLARAVRHATAALD
ALRASAKRLPPSETGPAVHPESFELARRYAVLAAAAACVGVWRAERARAGASFVGAPAWLEAALSRLSERLGMPKQPAPP
HVCDAIVSELVARADEHRSFCLYHARLNGGADVPASV
>Mature_596_residues
SADAILTGRERAHRRVDAAGPHADLEQALGDPFDAANPLGYARILDADEREALSPDAEAVLERWGMNAEFVPARLGGRWD
SVTEMVRRLRPVFRRDAALGIGHGVSSLVAAVGVWAAGSPAQQRELSELLLRGGKVSAAYHELDHGNDFLRNAFEAYPGA
DGALVLNGTKEVINNADRAHAWVVFARTDARAGGRSHSVLLLDRAALQPAIDAGELEILRRHRTAGVRGCRLAGLRFSRC
RVPAERLVAARGAGVEISLRAFQITRIALPGMAIGMLDTALRTVVAFARERTLYGTRVIEMPYVRALLSDAMADLLAADC
LVRAAARGLHLAPAHACVHAAAVKYLVPQLLRDSMNVLSVVLGARAYLRGGRHAIFGKMMRDMPIVGLAHAGGTACLLTV
LSQLPALARRAAHRARDAGAPFDERVALPPLDFDALTIAAHGEDWLLDALPNALDAFEAAGERATPLARAVRHATAALDA
LRASAKRLPPSETGPAVHPESFELARRYAVLAAAAACVGVWRAERARAGASFVGAPAWLEAALSRLSERLGMPKQPAPPH
VCDAIVSELVARADEHRSFCLYHARLNGGADVPASV

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=264, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=2e-15,
Organism=Homo sapiens, GI226958412, Length=259, Percent_Identity=22.007722007722, Blast_Score=73, Evalue=9e-13,
Organism=Homo sapiens, GI226958414, Length=259, Percent_Identity=22.007722007722, Blast_Score=73, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI71985192, Length=322, Percent_Identity=23.9130434782609, Blast_Score=79, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17538396, Length=303, Percent_Identity=21.4521452145215, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71985184, Length=316, Percent_Identity=23.4177215189873, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17508101, Length=258, Percent_Identity=21.7054263565891, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17506239, Length=295, Percent_Identity=21.3559322033898, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21356377, Length=264, Percent_Identity=25, Blast_Score=78, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 63698; Mature: 63567

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSADAILTGRERAHRRVDAAGPHADLEQALGDPFDAANPLGYARILDADEREALSPDAEA
CCCCCEECCHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHCCCCHHH
VLERWGMNAEFVPARLGGRWDSVTEMVRRLRPVFRRDAALGIGHGVSSLVAAVGVWAAGS
HHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
PAQQRELSELLLRGGKVSAAYHELDHGNDFLRNAFEAYPGADGALVLNGTKEVINNADRA
CHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCC
HAWVVFARTDARAGGRSHSVLLLDRAALQPAIDAGELEILRRHRTAGVRGCRLAGLRFSR
EEEEEEEECCCCCCCCCCCEEEEEHHHHCCCCCCHHHHHHHHHHHCCCCCCEEECCCHHH
CRVPAERLVAARGAGVEISLRAFQITRIALPGMAIGMLDTALRTVVAFARERTLYGTRVI
HCCCHHHHHHHCCCCCEEEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEH
EMPYVRALLSDAMADLLAADCLVRAAARGLHLAPAHACVHAAAVKYLVPQLLRDSMNVLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVLGARAYLRGGRHAIFGKMMRDMPIVGLAHAGGTACLLTVLSQLPALARRAAHRARDAG
HHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
APFDERVALPPLDFDALTIAAHGEDWLLDALPNALDAFEAAGERATPLARAVRHATAALD
CCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ALRASAKRLPPSETGPAVHPESFELARRYAVLAAAAACVGVWRAERARAGASFVGAPAWL
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
EAALSRLSERLGMPKQPAPPHVCDAIVSELVARADEHRSFCLYHARLNGGADVPASV
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC
>Mature Secondary Structure 
SADAILTGRERAHRRVDAAGPHADLEQALGDPFDAANPLGYARILDADEREALSPDAEA
CCCCEECCHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHCCCCHHH
VLERWGMNAEFVPARLGGRWDSVTEMVRRLRPVFRRDAALGIGHGVSSLVAAVGVWAAGS
HHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
PAQQRELSELLLRGGKVSAAYHELDHGNDFLRNAFEAYPGADGALVLNGTKEVINNADRA
CHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCC
HAWVVFARTDARAGGRSHSVLLLDRAALQPAIDAGELEILRRHRTAGVRGCRLAGLRFSR
EEEEEEEECCCCCCCCCCCEEEEEHHHHCCCCCCHHHHHHHHHHHCCCCCCEEECCCHHH
CRVPAERLVAARGAGVEISLRAFQITRIALPGMAIGMLDTALRTVVAFARERTLYGTRVI
HCCCHHHHHHHCCCCCEEEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEH
EMPYVRALLSDAMADLLAADCLVRAAARGLHLAPAHACVHAAAVKYLVPQLLRDSMNVLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVLGARAYLRGGRHAIFGKMMRDMPIVGLAHAGGTACLLTVLSQLPALARRAAHRARDAG
HHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
APFDERVALPPLDFDALTIAAHGEDWLLDALPNALDAFEAAGERATPLARAVRHATAALD
CCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ALRASAKRLPPSETGPAVHPESFELARRYAVLAAAAACVGVWRAERARAGASFVGAPAWL
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
EAALSRLSERLGMPKQPAPPHVCDAIVSELVARADEHRSFCLYHARLNGGADVPASV
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]