Click here to switch to the map view.

The map label for this gene is hpaR [H]

Identifier: 126447192

GI number: 126447192

Start: 1467856

End: 1468293

Strand: Direct

Name: hpaR [H]

Synonym: BMA10247_A1514

Alternate gene names: 126447192

Gene position: 1467856-1468293 (Clockwise)

Preceding gene: 126445912

Following gene: 126447802

Centisome position: 62.39

GC content: 64.16

Gene sequence:

>438_bases
ATGAATCGTACGTTCGATCACCGCAATCTGGCCATGCTGTTGCTCGAGGCCCGCGAAACGTTGATGGGCCGGTTCCGGCC
GATCCTGAAGGAATTTGCGCTGACGGAGCAGCAATGGCGGATCATTCGCGTGCTGGACGGCGAACCGTCTCATGAGCTCG
AAGCCGGGCAGATCGCGAAGCGCTGCTGCATCCTGAGCCCGAGCCTCACGGGCGTACTGGAGAGAATGGAGCGCGACGGC
CTGATTCGCCGCACGCGCGCGCAGGAGGACCAGCGCAGGCTGATCGTCAGCTTGACGCCGCAAAGTCGTCAGCTCGTCAC
GCAGATCAGCCCGCGCATCGACGAGCAGTATCGGCTCATCGAGCAGCGCTTCGGCGCGGATGCGCTCGGCGAGGTGTACG
CGGCGCTCGACAAACTGATCGACGTCGGCGGCTCGTGA

Upstream 100 bases:

>100_bases
AAAAGAACAACCGCAATAACCCTGATAACCCTGATAAGGCGGTCACCGACGATTTTCGCCCTGCTAAGATTGATGGATCA
ACTGCTCTTCCAGGACCCTC

Downstream 100 bases:

>100_bases
CGCGCGGCGCCCGCCGCGCGCGCGCCGTCGGCGCGAACGGGCGCTAGCGGGCTGCCGTCCGCGGCATCTGCGCGAGCACG
TCGATGCCGCGCGACGTGCG

Product: homoprotocatechuate degradative operon repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MNRTFDHRNLAMLLLEARETLMGRFRPILKEFALTEQQWRIIRVLDGEPSHELEAGQIAKRCCILSPSLTGVLERMERDG
LIRRTRAQEDQRRLIVSLTPQSRQLVTQISPRIDEQYRLIEQRFGADALGEVYAALDKLIDVGGS

Sequences:

>Translated_145_residues
MNRTFDHRNLAMLLLEARETLMGRFRPILKEFALTEQQWRIIRVLDGEPSHELEAGQIAKRCCILSPSLTGVLERMERDG
LIRRTRAQEDQRRLIVSLTPQSRQLVTQISPRIDEQYRLIEQRFGADALGEVYAALDKLIDVGGS
>Mature_145_residues
MNRTFDHRNLAMLLLEARETLMGRFRPILKEFALTEQQWRIIRVLDGEPSHELEAGQIAKRCCILSPSLTGVLERMERDG
LIRRTRAQEDQRRLIVSLTPQSRQLVTQISPRIDEQYRLIEQRFGADALGEVYAALDKLIDVGGS

Specific function: Repressor for the homoprotocatechuate catabolic pathway hpc operon [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012712
- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16716; Mature: 16716

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRTFDHRNLAMLLLEARETLMGRFRPILKEFALTEQQWRIIRVLDGEPSHELEAGQIAK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEECCCCCCCCCHHHHHH
RCCILSPSLTGVLERMERDGLIRRTRAQEDQRRLIVSLTPQSRQLVTQISPRIDEQYRLI
HHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCHHHHHHHH
EQRFGADALGEVYAALDKLIDVGGS
HHHHCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNRTFDHRNLAMLLLEARETLMGRFRPILKEFALTEQQWRIIRVLDGEPSHELEAGQIAK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEECCCCCCCCCHHHHHH
RCCILSPSLTGVLERMERDGLIRRTRAQEDQRRLIVSLTPQSRQLVTQISPRIDEQYRLI
HHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCHHHHHHHH
EQRFGADALGEVYAALDKLIDVGGS
HHHHCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8384293; 8550403 [H]