| Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
|---|---|
| Accession | NC_009079 |
| Length | 2,352,693 |
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The map label for this gene is 126447041
Identifier: 126447041
GI number: 126447041
Start: 615320
End: 617047
Strand: Direct
Name: 126447041
Synonym: BMA10247_A0665
Alternate gene names: NA
Gene position: 615320-617047 (Clockwise)
Preceding gene: 126446857
Following gene: 126446314
Centisome position: 26.15
GC content: 69.68
Gene sequence:
>1728_bases ATGCGTTTCGTGCTTTCGCGCCGCCGCGCGCGCGGCTTCGCGCTGATCGAGATGCTCGGCGCGCTCGCGATCGCCGCGCT GCTGCTTGCCGGCATCGCGGCGATGATGGACAGCTCGCTCGACGACGTGCGCGCGCAGCAGGCCGCGCAATACCAGGCGC AGGTGACGGCCGCGGCCACGCGTGCGCTCAAGCGTGACTACGACGCATGGCTGCAGCGCGCGAACGCGCAGACGCCCGTC GTGATGACGCTTGCCGATTTGCAGGCGACGAACGATCTGCCCGCCGCGCTACAGACACGCAACGCGTACGGCCAGCACAC GTGCGTGCTCGTCAAGCGCACCGCGAACGGCGTCGGACTCGACGCGCTCGTCGTGACGACGGGCGGCGAGGCGATCGGCG ACAAGGAGCTCGGGCTCGTCGCCGCGAGCGCGGGGCCGGGCGGCGGCTCGATCGCCACGAGCGCGCCCGCGCTCGCGCGC GGCGCGTTCGACGCGTGGCGCATGCCGCTCGGCGCCTACCTCGGCGGCAGCTCGCCGACGTGCGATCCGGCCGACGCCGC GCCGCCGAACGCCGGCCATCTCGCCAACGAGATCTTCTTCAACGGGCCGAGCCAGCAGATCAACAGCGATTACCTGTACC GCGTCGGCGTCGGCGGCCATCCGGAGGCGAACGCGATGCAGGTGCCGATCTGGCTCACGCACACGTTCGTCGAAGGCGCC GCCGACGCGGCGAACTGCGGCGCGGCCGGCAGCTATGCGAACGGCAAGCTCGGCGCGGACGCGGCCGGACAGTTGCTGAG CTGCAGGAACGGCGTGTGGCGCGGCGCCGGCGGTCACTGGAAGGACCCGGTCAGGACGGCCGACGATCTGCCCACCGACG CATCGAACGAAACCGGCGACGTGCGCCTCACGCTCGACACGTTCCGCGCGTTCGCGTGGACGGGCAACGCGTGGCAGGCG CTCGCCGTGGACCAGAACGGCAACATGATCGTGCCGGGCGTCGTCTCCGCGAACCAGTACGAGATCACCGGGCGCGTCGT CGTCAACACGCCGTGCGCGCCGGAGCCGAGCCGGCCGAACGCGGGGCTCGTGTCGATGGGCCAGGACGGGCAGGTGCTGT CCTGCCAGGGCGGCAAGTGGCTGCCGCAATCGGGGATCAAGATCGGCGGCACCGAAACGGCGTGCGAGATCCTGATGGAG ACGCCCGGCGCGACGGATTTCTCGTGCGGGTACACCTACCGCGGCCCCTATCCGAATCCGCCGCTCATCACCTACGAGCC CGACGGCACGTACACGTACACGATCAACCGGCCGGTGAAGCTCGACAACAACGGGCTCATCGCGGTGAGCGCGTACATGC ACATGAGCTACGCGACGTGCGCGCTGAAAGGGCGGGAAGGACAGATGCGTCTCGTCGTCGACGTGATCGACGTTCAGAGC AACCAGGTGATCGCGCACAGCGAGGCGCAGTCGACGAAGCTGATCGAGGACGCCGCGACGATCAACGTCACGCTGAATCA GGCCGCCGAGCCGCGCAGCGGCTACACGGTCAGGCTGTCGAGCAAGTGGGCGACGTACGACAGCTATGCGGGCACGCCGT GGACGTCGAGCTATTGCAGCGGCGGCAAGACGTTTCTCCAGACGCCGCTCGTGACCGGCTGGACGATCTTCGTTCTATTG AACGGCGCTTCGCCGCGCGTGGCCGCCGCCGCGCGGCGCTGCGGTTAA
Upstream 100 bases:
>100_bases CCGGTCGGGCGGATCCGAACGCGCCCGCGAGCGGCGTGCCGCTGCCCGCGGGGCTCGCGATCGCCGACGGCCTGCCGGTC TGGATGGGGCAGGCGTACTG
Downstream 100 bases:
>100_bases CTGCAGGGGTCTCCCATTCGCGGCGCGCGCCCGTCCGAGCGACGGCGCGCGCCCCCACCGGACGGACCCATGAAGGCCAA GATTCCCGTTTTGCTGTCCC
Product: type IV prepilin
Products: NA
Alternate protein names: Type IV Prepilin PilV Protein; Type IV B Pilus Protein; Type IV Pilus Biogenesis Protein PilV; Type IV Pilus Protein PilV
Number of amino acids: Translated: 575; Mature: 575
Protein sequence:
>575_residues MRFVLSRRRARGFALIEMLGALAIAALLLAGIAAMMDSSLDDVRAQQAAQYQAQVTAAATRALKRDYDAWLQRANAQTPV VMTLADLQATNDLPAALQTRNAYGQHTCVLVKRTANGVGLDALVVTTGGEAIGDKELGLVAASAGPGGGSIATSAPALAR GAFDAWRMPLGAYLGGSSPTCDPADAAPPNAGHLANEIFFNGPSQQINSDYLYRVGVGGHPEANAMQVPIWLTHTFVEGA ADAANCGAAGSYANGKLGADAAGQLLSCRNGVWRGAGGHWKDPVRTADDLPTDASNETGDVRLTLDTFRAFAWTGNAWQA LAVDQNGNMIVPGVVSANQYEITGRVVVNTPCAPEPSRPNAGLVSMGQDGQVLSCQGGKWLPQSGIKIGGTETACEILME TPGATDFSCGYTYRGPYPNPPLITYEPDGTYTYTINRPVKLDNNGLIAVSAYMHMSYATCALKGREGQMRLVVDVIDVQS NQVIAHSEAQSTKLIEDAATINVTLNQAAEPRSGYTVRLSSKWATYDSYAGTPWTSSYCSGGKTFLQTPLVTGWTIFVLL NGASPRVAAAARRCG
Sequences:
>Translated_575_residues MRFVLSRRRARGFALIEMLGALAIAALLLAGIAAMMDSSLDDVRAQQAAQYQAQVTAAATRALKRDYDAWLQRANAQTPV VMTLADLQATNDLPAALQTRNAYGQHTCVLVKRTANGVGLDALVVTTGGEAIGDKELGLVAASAGPGGGSIATSAPALAR GAFDAWRMPLGAYLGGSSPTCDPADAAPPNAGHLANEIFFNGPSQQINSDYLYRVGVGGHPEANAMQVPIWLTHTFVEGA ADAANCGAAGSYANGKLGADAAGQLLSCRNGVWRGAGGHWKDPVRTADDLPTDASNETGDVRLTLDTFRAFAWTGNAWQA LAVDQNGNMIVPGVVSANQYEITGRVVVNTPCAPEPSRPNAGLVSMGQDGQVLSCQGGKWLPQSGIKIGGTETACEILME TPGATDFSCGYTYRGPYPNPPLITYEPDGTYTYTINRPVKLDNNGLIAVSAYMHMSYATCALKGREGQMRLVVDVIDVQS NQVIAHSEAQSTKLIEDAATINVTLNQAAEPRSGYTVRLSSKWATYDSYAGTPWTSSYCSGGKTFLQTPLVTGWTIFVLL NGASPRVAAAARRCG >Mature_575_residues MRFVLSRRRARGFALIEMLGALAIAALLLAGIAAMMDSSLDDVRAQQAAQYQAQVTAAATRALKRDYDAWLQRANAQTPV VMTLADLQATNDLPAALQTRNAYGQHTCVLVKRTANGVGLDALVVTTGGEAIGDKELGLVAASAGPGGGSIATSAPALAR GAFDAWRMPLGAYLGGSSPTCDPADAAPPNAGHLANEIFFNGPSQQINSDYLYRVGVGGHPEANAMQVPIWLTHTFVEGA ADAANCGAAGSYANGKLGADAAGQLLSCRNGVWRGAGGHWKDPVRTADDLPTDASNETGDVRLTLDTFRAFAWTGNAWQA LAVDQNGNMIVPGVVSANQYEITGRVVVNTPCAPEPSRPNAGLVSMGQDGQVLSCQGGKWLPQSGIKIGGTETACEILME TPGATDFSCGYTYRGPYPNPPLITYEPDGTYTYTINRPVKLDNNGLIAVSAYMHMSYATCALKGREGQMRLVVDVIDVQS NQVIAHSEAQSTKLIEDAATINVTLNQAAEPRSGYTVRLSSKWATYDSYAGTPWTSSYCSGGKTFLQTPLVTGWTIFVLL NGASPRVAAAARRCG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60445; Mature: 60445
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFVLSRRRARGFALIEMLGALAIAALLLAGIAAMMDSSLDDVRAQQAAQYQAQVTAAAT CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH RALKRDYDAWLQRANAQTPVVMTLADLQATNDLPAALQTRNAYGQHTCVLVKRTANGVGL HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHCCCCCCEEEEEEEECCCCCCE DALVVTTGGEAIGDKELGLVAASAGPGGGSIATSAPALARGAFDAWRMPLGAYLGGSSPT EEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCHHHHHCCHHHEECCCCCC CDPADAAPPNAGHLANEIFFNGPSQQINSDYLYRVGVGGHPEANAMQVPIWLTHTFVEGA CCCCCCCCCCCCHHHHHEEECCCCHHCCCCEEEEECCCCCCCCCCEEEEEEEEEHHHHCC ADAANCGAAGSYANGKLGADAAGQLLSCRNGVWRGAGGHWKDPVRTADDLPTDASNETGD CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VRLTLDTFRAFAWTGNAWQALAVDQNGNMIVPGVVSANQYEITGRVVVNTPCAPEPSRPN EEEEHHHCEEEEEECCCEEEEEEECCCCEEECCEECCCEEEEEEEEEEECCCCCCCCCCC AGLVSMGQDGQVLSCQGGKWLPQSGIKIGGTETACEILMETPGATDFSCGYTYRGPYPNP CCEEEECCCCCEEEECCCCCCCCCCCEECCCHHHHHHHCCCCCCCCCCCCCEECCCCCCC PLITYEPDGTYTYTINRPVKLDNNGLIAVSAYMHMSYATCALKGREGQMRLVVDVIDVQS CEEEECCCCCEEEEECCCEEECCCCEEEEEEEHHHEEEEEEEECCCCCEEEEEEEEECCC NQVIAHSEAQSTKLIEDAATINVTLNQAAEPRSGYTVRLSSKWATYDSYAGTPWTSSYCS CEEEEECCCCHHHHEECCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHC GGKTFLQTPLVTGWTIFVLLNGASPRVAAAARRCG CCCHHHHCCCCCCEEEEEEEECCCCHHHHHHHHCC >Mature Secondary Structure MRFVLSRRRARGFALIEMLGALAIAALLLAGIAAMMDSSLDDVRAQQAAQYQAQVTAAAT CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH RALKRDYDAWLQRANAQTPVVMTLADLQATNDLPAALQTRNAYGQHTCVLVKRTANGVGL HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHCCCCCCEEEEEEEECCCCCCE DALVVTTGGEAIGDKELGLVAASAGPGGGSIATSAPALARGAFDAWRMPLGAYLGGSSPT EEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCHHHHHCCHHHEECCCCCC CDPADAAPPNAGHLANEIFFNGPSQQINSDYLYRVGVGGHPEANAMQVPIWLTHTFVEGA CCCCCCCCCCCCHHHHHEEECCCCHHCCCCEEEEECCCCCCCCCCEEEEEEEEEHHHHCC ADAANCGAAGSYANGKLGADAAGQLLSCRNGVWRGAGGHWKDPVRTADDLPTDASNETGD CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VRLTLDTFRAFAWTGNAWQALAVDQNGNMIVPGVVSANQYEITGRVVVNTPCAPEPSRPN EEEEHHHCEEEEEECCCEEEEEEECCCCEEECCEECCCEEEEEEEEEEECCCCCCCCCCC AGLVSMGQDGQVLSCQGGKWLPQSGIKIGGTETACEILMETPGATDFSCGYTYRGPYPNP CCEEEECCCCCEEEECCCCCCCCCCCEECCCHHHHHHHCCCCCCCCCCCCCEECCCCCCC PLITYEPDGTYTYTINRPVKLDNNGLIAVSAYMHMSYATCALKGREGQMRLVVDVIDVQS CEEEECCCCCEEEEECCCEEECCCCEEEEEEEHHHEEEEEEEECCCCCEEEEEEEEECCC NQVIAHSEAQSTKLIEDAATINVTLNQAAEPRSGYTVRLSSKWATYDSYAGTPWTSSYCS CEEEEECCCCHHHHEECCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHC GGKTFLQTPLVTGWTIFVLLNGASPRVAAAARRCG CCCHHHHCCCCCCEEEEEEEECCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA