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The map label for this gene is yqhC [H]

Identifier: 126447032

GI number: 126447032

Start: 1478622

End: 1479599

Strand: Reverse

Name: yqhC [H]

Synonym: BMA10247_A1528

Alternate gene names: 126447032

Gene position: 1479599-1478622 (Counterclockwise)

Preceding gene: 126447773

Following gene: 126446118

Centisome position: 62.89

GC content: 70.04

Gene sequence:

>978_bases
ATGGATCAGCGCCACACCCGACTCGAATCCGCCGCGCACGCGCCGCCCCGGCCCGATGCGCAAACGCTTGCGCCGCGCGA
GGCCGCGCGCCGCGAGCTCGCCGCGCTGATCGAGCGCTTCGCGCCCGCCGACGGCGCGCACCCGAGCGCGATTCCCGCGC
TGTCGTTCTTTCGCTGCTCGTCGCCCGTCGATCTCGGCTGCAGCGTCACGCGCGCCGCGTTCGTGTTCGCCGCGCAGGGC
GCGAAGCGGGTAACGGTCGCGGGGCAGGCGTACGAATACGATCATCAGCAGTGCCTCGTCACGTCGGTCGATCTGCCGAT
GCTGTCGCAGGTCACGCGCGCGTCGGCCGGCGCGCCGTATCTGTGCGTGAAGGTCGCGCTCGACGTGCAGCGCATCGCCG
AGCTCTCGGCCGAGATGCGGATGCCGCCGCCGGAGGCGGTGCCCACGGGCGAGGGAATCGTCGTCGGCGCGCTGTCCGAG
CCGCTTTTCGACGCGGCGCTGCGGCTCGTGCGATTGCTCGATACTCCAGCCGACATCCCGATCCTCGCGCCGCTGATCGA
AAAGGAGCTGCTGTACCGGCTGCTGACGAGCGGGCTGGGCGCGCGGCTGCGGCACATCGCGGTCGCGGGCAGCCAGACGT
ACCGGATCGCGCGTGCGATCGAATGGCTTCGTCATCACTACACGGAGCCGCTCAGGGTCGAGACGCTCGCGCAGCAGGTC
AATATGAGCGTGTCGTCGCTGCATCATCACTTCAAGCACGTGACGACGCTCAGCCCGCTCCAGTATCAGAAGCAACTGCG
GCTGCACGAGGCGCGCCGGCTGCTGCTCGGCCAGCACGGCGACGTCGGTTCGGTCGCGCTCAGGGTCGGATACGACAGCC
CGTCGCAGTTCAGCCGCGAATACAGCCGGCTGTTCGGCGCGCCGCCGTTGCGCGACGTCGTGCAACGGCGGCGCAACGGG
ACGGGCGTTCAGGAGTGA

Upstream 100 bases:

>100_bases
ATCCTGCAAATCCCGGGGGGCGGGCAGCCGACCCGTCGCCTGTCGTATCGCCCGCGTCCGCGCCTGCTACGATCACGATT
CCGACGCCCGCTCATTGCCG

Downstream 100 bases:

>100_bases
CGTGCGCGCGCGCGGCGCGTTGTCGCTGGAGGGTGACGGCAGACGCCGGTCTCGGTCAGGCCCGCGCGGCGCGCGACGAG
GCACGCGCGTCTCATCCGCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MDQRHTRLESAAHAPPRPDAQTLAPREAARRELAALIERFAPADGAHPSAIPALSFFRCSSPVDLGCSVTRAAFVFAAQG
AKRVTVAGQAYEYDHQQCLVTSVDLPMLSQVTRASAGAPYLCVKVALDVQRIAELSAEMRMPPPEAVPTGEGIVVGALSE
PLFDAALRLVRLLDTPADIPILAPLIEKELLYRLLTSGLGARLRHIAVAGSQTYRIARAIEWLRHHYTEPLRVETLAQQV
NMSVSSLHHHFKHVTTLSPLQYQKQLRLHEARRLLLGQHGDVGSVALRVGYDSPSQFSREYSRLFGAPPLRDVVQRRRNG
TGVQE

Sequences:

>Translated_325_residues
MDQRHTRLESAAHAPPRPDAQTLAPREAARRELAALIERFAPADGAHPSAIPALSFFRCSSPVDLGCSVTRAAFVFAAQG
AKRVTVAGQAYEYDHQQCLVTSVDLPMLSQVTRASAGAPYLCVKVALDVQRIAELSAEMRMPPPEAVPTGEGIVVGALSE
PLFDAALRLVRLLDTPADIPILAPLIEKELLYRLLTSGLGARLRHIAVAGSQTYRIARAIEWLRHHYTEPLRVETLAQQV
NMSVSSLHHHFKHVTTLSPLQYQKQLRLHEARRLLLGQHGDVGSVALRVGYDSPSQFSREYSRLFGAPPLRDVVQRRRNG
TGVQE
>Mature_325_residues
MDQRHTRLESAAHAPPRPDAQTLAPREAARRELAALIERFAPADGAHPSAIPALSFFRCSSPVDLGCSVTRAAFVFAAQG
AKRVTVAGQAYEYDHQQCLVTSVDLPMLSQVTRASAGAPYLCVKVALDVQRIAELSAEMRMPPPEAVPTGEGIVVGALSE
PLFDAALRLVRLLDTPADIPILAPLIEKELLYRLLTSGLGARLRHIAVAGSQTYRIARAIEWLRHHYTEPLRVETLAQQV
NMSVSSLHHHFKHVTTLSPLQYQKQLRLHEARRLLLGQHGDVGSVALRVGYDSPSQFSREYSRLFGAPPLRDVVQRRRNG
TGVQE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=298, Percent_Identity=32.5503355704698, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1790339, Length=103, Percent_Identity=33.0097087378641, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35757; Mature: 35757

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQRHTRLESAAHAPPRPDAQTLAPREAARRELAALIERFAPADGAHPSAIPALSFFRCS
CCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
SPVDLGCSVTRAAFVFAAQGAKRVTVAGQAYEYDHQQCLVTSVDLPMLSQVTRASAGAPY
CCCCCCCHHHHHHHHHHHCCCCEEEECCCHHHCCCHHHHHEECCHHHHHHHHHHCCCCCE
LCVKVALDVQRIAELSAEMRMPPPEAVPTGEGIVVGALSEPLFDAALRLVRLLDTPADIP
EEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCH
ILAPLIEKELLYRLLTSGLGARLRHIAVAGSQTYRIARAIEWLRHHYTEPLRVETLAQQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
NMSVSSLHHHFKHVTTLSPLQYQKQLRLHEARRLLLGQHGDVGSVALRVGYDSPSQFSRE
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHH
YSRLFGAPPLRDVVQRRRNGTGVQE
HHHHHCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDQRHTRLESAAHAPPRPDAQTLAPREAARRELAALIERFAPADGAHPSAIPALSFFRCS
CCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
SPVDLGCSVTRAAFVFAAQGAKRVTVAGQAYEYDHQQCLVTSVDLPMLSQVTRASAGAPY
CCCCCCCHHHHHHHHHHHCCCCEEEECCCHHHCCCHHHHHEECCHHHHHHHHHHCCCCCE
LCVKVALDVQRIAELSAEMRMPPPEAVPTGEGIVVGALSEPLFDAALRLVRLLDTPADIP
EEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCH
ILAPLIEKELLYRLLTSGLGARLRHIAVAGSQTYRIARAIEWLRHHYTEPLRVETLAQQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
NMSVSSLHHHFKHVTTLSPLQYQKQLRLHEARRLLLGQHGDVGSVALRVGYDSPSQFSRE
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHH
YSRLFGAPPLRDVVQRRRNGTGVQE
HHHHHCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]