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The map label for this gene is tctD [H]

Identifier: 126446503

GI number: 126446503

Start: 1453232

End: 1453990

Strand: Reverse

Name: tctD [H]

Synonym: BMA10247_A1501

Alternate gene names: 126446503

Gene position: 1453990-1453232 (Counterclockwise)

Preceding gene: 126447904

Following gene: 126447126

Centisome position: 61.8

GC content: 67.19

Gene sequence:

>759_bases
ATGGTAAGCGGTGCGCACTTTCAGCGTGCTTTCATTTTTCGTCACGATCGCTTTCTTTTGATTATGGATTTCCCGAGGTT
TCGTTCAATGCGCGTGCTGCTCGTCGAAGACAACCCGATCCTCGCGCAGTCGCTCGCCGACGCGCTTTCGTCCGCGCGTT
TCGCGGTCGACCACATGGCGGACGGCGAGGCCGCCGATCACGTGCTGCACACGCAGGACTACGCGCTCGTGATTCTCGAC
CTCGGGCTGCCGAAGCTCGACGGCCTCGACGTGCTGCGGCGGCTGCGCGCGCGGCGCAACCCGGTGCCGGTGCTGATCCT
CACCGCGCACGGCTCGGTCGAGGACCGCGTGCGCGGGCTCGATCTCGGCGCGGACGACTACCTCGCGAAGCCGTTCGAGC
TGACCGAGCTCGAGGCGCGCGCTCGCGCGCTGATCCGGCGCAGCCTCGGGCACGAGCACGGGCGCGTCGAGTGCGGGCCG
CTCGCGTTCGACAGCGTCGACCGGAGTTTTCGTCTGAACAATGACGCGCTCGCGCTGACGCCGCGCGAGCGCTCGGTGCT
CGAGGTGCTGATCCTGCGCAACGGCCGCGCGATCAACAAGGAGACGCTGTCGGAGAAGATCTTCGGGCTCGACGAATCGG
TGAACGCGGACGCGATCGAGATCTACGTGCACCGGCTGCGCAAGAAGCTCGAGGGCAGCGGCGTCGCGATCGTCACGCTG
CGCGGGCTCGGCTACCTGCTCGAGGCGCAGCCGTCGTGA

Upstream 100 bases:

>100_bases
CAGACAGTGCTTGCGGCGACGAAAAGAACGGCGGCGATGCCGGCCGGTGCGTGATGCATGTCTTCCTCCAGTTGCGTCTT
GTTCGGTTCGAGTGACGCGG

Downstream 100 bases:

>100_bases
CGCGGCTCAATCTGCGCGCGCAGGTCGCGTTATGGTTGCTGCTGCCGTTCCTCGGGCTGCTCGCGCTCGATTCGTGGCTC
ACGTACCAGCGCGCGATGAA

Product: DNA-binding response regulator TctD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MVSGAHFQRAFIFRHDRFLLIMDFPRFRSMRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILD
LGLPKLDGLDVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSLGHEHGRVECGP
LAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFGLDESVNADAIEIYVHRLRKKLEGSGVAIVTL
RGLGYLLEAQPS

Sequences:

>Translated_252_residues
MVSGAHFQRAFIFRHDRFLLIMDFPRFRSMRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILD
LGLPKLDGLDVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSLGHEHGRVECGP
LAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFGLDESVNADAIEIYVHRLRKKLEGSGVAIVTL
RGLGYLLEAQPS
>Mature_252_residues
MVSGAHFQRAFIFRHDRFLLIMDFPRFRSMRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILD
LGLPKLDGLDVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSLGHEHGRVECGP
LAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFGLDESVNADAIEIYVHRLRKKLEGSGVAIVTL
RGLGYLLEAQPS

Specific function: Transcriptional activator of the tctI tricarboxylate transport system operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=41.743119266055, Blast_Score=164, Evalue=4e-42,
Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=39.3665158371041, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=37.5565610859729, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI87082012, Length=220, Percent_Identity=37.7272727272727, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1786784, Length=223, Percent_Identity=36.322869955157, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=32.5991189427313, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=31.8181818181818, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=35.0877192982456, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788394, Length=224, Percent_Identity=31.6964285714286, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=32.1266968325792, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=33.4821428571429, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787229, Length=227, Percent_Identity=29.0748898678414, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=28.1385281385281, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788550, Length=123, Percent_Identity=32.520325203252, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788713, Length=115, Percent_Identity=31.304347826087, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI145693140, Length=232, Percent_Identity=25, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1790299, Length=120, Percent_Identity=30.8333333333333, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1790437, Length=122, Percent_Identity=31.9672131147541, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI145693157, Length=105, Percent_Identity=34.2857142857143, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI48994928, Length=116, Percent_Identity=36.2068965517241, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 28202; Mature: 28202

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSGAHFQRAFIFRHDRFLLIMDFPRFRSMRVLLVEDNPILAQSLADALSSARFAVDHMA
CCCCHHHHEEEEEECCCEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC
DGEAADHVLHTQDYALVILDLGLPKLDGLDVLRRLRARRNPVPVLILTAHGSVEDRVRGL
CCCHHHHEEECCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHCC
DLGADDYLAKPFELTELEARARALIRRSLGHEHGRVECGPLAFDSVDRSFRLNNDALALT
CCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCEECCCCCCCEEECCCEEEEC
PRERSVLEVLILRNGRAINKETLSEKIFGLDESVNADAIEIYVHRLRKKLEGSGVAIVTL
CCHHHHHEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
RGLGYLLEAQPS
CCCCEEEECCCC
>Mature Secondary Structure
MVSGAHFQRAFIFRHDRFLLIMDFPRFRSMRVLLVEDNPILAQSLADALSSARFAVDHMA
CCCCHHHHEEEEEECCCEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC
DGEAADHVLHTQDYALVILDLGLPKLDGLDVLRRLRARRNPVPVLILTAHGSVEDRVRGL
CCCHHHHEEECCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHCC
DLGADDYLAKPFELTELEARARALIRRSLGHEHGRVECGPLAFDSVDRSFRLNNDALALT
CCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCEECCCCCCCEEECCCEEEEC
PRERSVLEVLILRNGRAINKETLSEKIFGLDESVNADAIEIYVHRLRKKLEGSGVAIVTL
CCHHHHHEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
RGLGYLLEAQPS
CCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2666399; 11083839; 11677609 [H]