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The map label for this gene is oprD [H]

Identifier: 126446428

GI number: 126446428

Start: 346099

End: 347682

Strand: Direct

Name: oprD [H]

Synonym: BMA10247_A0390

Alternate gene names: 126446428

Gene position: 346099-347682 (Clockwise)

Preceding gene: 126447243

Following gene: 126445874

Centisome position: 14.71

GC content: 66.04

Gene sequence:

>1584_bases
GTGTGGACGGCGCGAACGATCTTCGCGCCGAGGGAAGACGCGTCGCTACGGCGGCGCGTCGGGGTGTCGCCGGCCGCGAG
GCGCGGCCGGCGAGTGGGTAGTCAACATAAAAAGAGAAGCGCAATGACACAACATCGATCGATGAAGAGGGTCGCGCGGG
CGGTCGTGCTCGCGTGGGGACTGCCGATGCTCGCCGGCGTATCGATTGCCGGCGCCGCGCGCGCGGACGATGCGGCGCCC
GCCGCGCCGGCTCAGGCGCCGTTAGCCGCGACGCTCGCGCAGCAGGCGACGACGCCGAACGCGCTCGTCAATGCCGACGC
CACGCAGGCGGTGCTGCCGCAGCCGCCGATGTCGAGCCAGGCGAAATCGAAGGGCTTCATTGCCGACAGCCATTTCGACG
TGCTGTTGCGCAATTACGCGGACGTGCTCGATGCGAAGGGCGGGCCGCATCGTCACGCGTGGGTCCAGGGCGTGATGGCG
AACTTCGAGTCCGGCTATACGGGCGGGCTGATCGGCTTCGGCGTGGACGCGTCGATCTACGCGGCGCTGAAGCTCGACGG
CGGCGCGGGCGGCGGCAACATGGTGCACGTCGCGAAGGGCGGCGGCGGCTCGAACCAGCTCGCTTGGGCGTTCCCCGGCA
TCTATGACGTGAAGGCGCGCATCTCGAACACCGTGATCAAGTACGGCCTGCAGGCGGTCGACAATCCGTTCATGGAGCAG
CACGACAACCGCGCGCTGCCGCCGACGTTCCTCGGCGCGACGATCGTGAGCAACGAATTCAAGAACGTGATGCTCGAGGC
GGGCAGCTTCACGAAGACCAACGCGCGCGGCCATACGACACTCACGAACCTGACGACGCAATACGGCGGCACGCGCGTCG
ACCGCTTCACGTACGTCGGCGGCACGTGGGATTATTCGCAGACGGGCTCGGCGTCGTTCTACGCGGGCCAGGCCGACGAT
GTCTGGCGCCAGTACTACGGCTCGGTCAAGCAAAGCTACGGCTCGCCGCAGACGGTCAAGTGGACGGGCTTCGGCAATTT
CTATTCGACGCACGACACGGGCGACGCGCGCCAGGGCAAGATCGACAACAACGCGTACAGCCTGTCGCTCGCCGCGCAGC
ACGGCCCGCACGAGCTGCTGCTCGGCTATCAGCAGGTGCTCGGCGACCAGTTCTTCGATTACCTGAACGAAACGAACGGC
ATCTTCCTCGTCGATTCGATGGACGTCGACTACAACGCGCCGCACGAGAAATCGCTGCAACTGCGCTACACGTTCTACGG
CAAGGAGGCGGGCCTGCCCGGCTTCAAGGCGATGGTGTGGGGCGTGACAGGCTGGGGGGCGGACGGCTCCGCGAGCGCGG
CGCTCGATCCGACGCGCTCGAGCATCTACTGGAAGGACGGCGCGCCGGTGCAGGGCCGCCATCACGAGTTCGGCTTCATC
CCGTCGTATACGATCCAGAGCGGCAAGCTCAAGGACACGAAGATCACGTTCATCGCGATGTGGCACGTGGGTTCGGCGCA
CTACTCGGACAGTACCAACCAGGAATACCGGCTGGTCGTGAACGTGCCGGTGAAGGTGTTCTAA

Upstream 100 bases:

>100_bases
GTGCGCGGCGTGACGGGCGCGCGCGTCGCGTGCATTCGCGCGGGCACGGGCGGTGCGGCGCGCTGAGCGGGACAGACGAA
GAAACAACAAGCCAACAGGG

Downstream 100 bases:

>100_bases
GGAAGGCGAAGCGAAAGCGGGCGGGTGGCGATTCGGCTGCCGTTGCCCGGCGTCGGCGCCGTCGTCGTGCCGCCGTCGCG
TTGCCATGGCGGCGATGTGG

Product: OprD family outer membrane porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 527; Mature: 527

Protein sequence:

>527_residues
MWTARTIFAPREDASLRRRVGVSPAARRGRRVGSQHKKRSAMTQHRSMKRVARAVVLAWGLPMLAGVSIAGAARADDAAP
AAPAQAPLAATLAQQATTPNALVNADATQAVLPQPPMSSQAKSKGFIADSHFDVLLRNYADVLDAKGGPHRHAWVQGVMA
NFESGYTGGLIGFGVDASIYAALKLDGGAGGGNMVHVAKGGGGSNQLAWAFPGIYDVKARISNTVIKYGLQAVDNPFMEQ
HDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTNARGHTTLTNLTTQYGGTRVDRFTYVGGTWDYSQTGSASFYAGQADD
VWRQYYGSVKQSYGSPQTVKWTGFGNFYSTHDTGDARQGKIDNNAYSLSLAAQHGPHELLLGYQQVLGDQFFDYLNETNG
IFLVDSMDVDYNAPHEKSLQLRYTFYGKEAGLPGFKAMVWGVTGWGADGSASAALDPTRSSIYWKDGAPVQGRHHEFGFI
PSYTIQSGKLKDTKITFIAMWHVGSAHYSDSTNQEYRLVVNVPVKVF

Sequences:

>Translated_527_residues
MWTARTIFAPREDASLRRRVGVSPAARRGRRVGSQHKKRSAMTQHRSMKRVARAVVLAWGLPMLAGVSIAGAARADDAAP
AAPAQAPLAATLAQQATTPNALVNADATQAVLPQPPMSSQAKSKGFIADSHFDVLLRNYADVLDAKGGPHRHAWVQGVMA
NFESGYTGGLIGFGVDASIYAALKLDGGAGGGNMVHVAKGGGGSNQLAWAFPGIYDVKARISNTVIKYGLQAVDNPFMEQ
HDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTNARGHTTLTNLTTQYGGTRVDRFTYVGGTWDYSQTGSASFYAGQADD
VWRQYYGSVKQSYGSPQTVKWTGFGNFYSTHDTGDARQGKIDNNAYSLSLAAQHGPHELLLGYQQVLGDQFFDYLNETNG
IFLVDSMDVDYNAPHEKSLQLRYTFYGKEAGLPGFKAMVWGVTGWGADGSASAALDPTRSSIYWKDGAPVQGRHHEFGFI
PSYTIQSGKLKDTKITFIAMWHVGSAHYSDSTNQEYRLVVNVPVKVF
>Mature_527_residues
MWTARTIFAPREDASLRRRVGVSPAARRGRRVGSQHKKRSAMTQHRSMKRVARAVVLAWGLPMLAGVSIAGAARADDAAP
AAPAQAPLAATLAQQATTPNALVNADATQAVLPQPPMSSQAKSKGFIADSHFDVLLRNYADVLDAKGGPHRHAWVQGVMA
NFESGYTGGLIGFGVDASIYAALKLDGGAGGGNMVHVAKGGGGSNQLAWAFPGIYDVKARISNTVIKYGLQAVDNPFMEQ
HDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTNARGHTTLTNLTTQYGGTRVDRFTYVGGTWDYSQTGSASFYAGQADD
VWRQYYGSVKQSYGSPQTVKWTGFGNFYSTHDTGDARQGKIDNNAYSLSLAAQHGPHELLLGYQQVLGDQFFDYLNETNG
IFLVDSMDVDYNAPHEKSLQLRYTFYGKEAGLPGFKAMVWGVTGWGADGSASAALDPTRSSIYWKDGAPVQGRHHEFGFI
PSYTIQSGKLKDTKITFIAMWHVGSAHYSDSTNQEYRLVVNVPVKVF

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 57012; Mature: 57012

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWTARTIFAPREDASLRRRVGVSPAARRGRRVGSQHKKRSAMTQHRSMKRVARAVVLAWG
CCCCCEEECCCCCHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPMLAGVSIAGAARADDAAPAAPAQAPLAATLAQQATTPNALVNADATQAVLPQPPMSSQ
CHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCC
AKSKGFIADSHFDVLLRNYADVLDAKGGPHRHAWVQGVMANFESGYTGGLIGFGVDASIY
HHCCCCEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEE
AALKLDGGAGGGNMVHVAKGGGGSNQLAWAFPGIYDVKARISNTVIKYGLQAVDNPFMEQ
EEEEECCCCCCCCEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
HDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTNARGHTTLTNLTTQYGGTRVDRFTYVG
CCCCCCCHHHHHHHHHHHHHHHHHEECCCCEECCCCCCEEEHHHHHHCCCEEEEEEEEEC
GTWDYSQTGSASFYAGQADDVWRQYYGSVKQSYGSPQTVKWTGFGNFYSTHDTGDARQGK
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCC
IDNNAYSLSLAAQHGPHELLLGYQQVLGDQFFDYLNETNGIFLVDSMDVDYNAPHEKSLQ
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEE
LRYTFYGKEAGLPGFKAMVWGVTGWGADGSASAALDPTRSSIYWKDGAPVQGRHHEFGFI
EEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
PSYTIQSGKLKDTKITFIAMWHVGSAHYSDSTNQEYRLVVNVPVKVF
CCEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEC
>Mature Secondary Structure
MWTARTIFAPREDASLRRRVGVSPAARRGRRVGSQHKKRSAMTQHRSMKRVARAVVLAWG
CCCCCEEECCCCCHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPMLAGVSIAGAARADDAAPAAPAQAPLAATLAQQATTPNALVNADATQAVLPQPPMSSQ
CHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCC
AKSKGFIADSHFDVLLRNYADVLDAKGGPHRHAWVQGVMANFESGYTGGLIGFGVDASIY
HHCCCCEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEE
AALKLDGGAGGGNMVHVAKGGGGSNQLAWAFPGIYDVKARISNTVIKYGLQAVDNPFMEQ
EEEEECCCCCCCCEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
HDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTNARGHTTLTNLTTQYGGTRVDRFTYVG
CCCCCCCHHHHHHHHHHHHHHHHHEECCCCEECCCCCCEEEHHHHHHCCCEEEEEEEEEC
GTWDYSQTGSASFYAGQADDVWRQYYGSVKQSYGSPQTVKWTGFGNFYSTHDTGDARQGK
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCC
IDNNAYSLSLAAQHGPHELLLGYQQVLGDQFFDYLNETNGIFLVDSMDVDYNAPHEKSLQ
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEE
LRYTFYGKEAGLPGFKAMVWGVTGWGADGSASAALDPTRSSIYWKDGAPVQGRHHEFGFI
EEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
PSYTIQSGKLKDTKITFIAMWHVGSAHYSDSTNQEYRLVVNVPVKVF
CCEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]