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The map label for this gene is hrpA1 [H]

Identifier: 126446314

GI number: 126446314

Start: 617117

End: 618916

Strand: Direct

Name: hrpA1 [H]

Synonym: BMA10247_A0666

Alternate gene names: 126446314

Gene position: 617117-618916 (Clockwise)

Preceding gene: 126447041

Following gene: 126446267

Centisome position: 26.23

GC content: 68.94

Gene sequence:

>1800_bases
ATGAAGGCCAAGATTCCCGTTTTGCTGTCCCTGCTGTGCTCGCTCGCGAGCCTTTCCGTCGACGCCGCGCCGATCCGCTG
GCGCAGCGCCGACATCCAGTACGCGGCCGAGGGCAAGGACGTGAAGGACGTGCTGCGCGATCTCGCCGCGAGCCAGAACA
TCGCGGCGAACGTCGCGCCCGGCGTGAGCGGCGCGGTGAGCGGCAAGATGAAGATGTCGCCGCAGCGCTTTCTCGACACG
CTCGCCGCGTCGTTCGGCTTTGTCTGGTATTACGACGGCACCGTGCTGTACGTGACGCCCGCGAGCGACATGAAGAGCAC
GCTCGTCAAGCTCGATCACGCGAACACGGGCGACCTGCGCGACCTGCTCGAGCAGATGAAGGTCGCCGATTCGCGCTATC
CGATCACCTACAACGCGCAGCAGCGCACCGCGCTCGTCGCGGGGCCGGCGCGCTACGTCGAGCTCGTGACGAGCGTCGCC
GCGCGGCTCGACGAGAATTCCGCGCGCACGGGCGGCACGCAGATCCGCGTGTTCTCGCTGAAGCACGCATGGGCCGCGGA
TCGCGACGTGAACGTCGACGGCACGGCGGTATCGATGCCGGGCGTGGCTTCGCTGCTGAACCGGATGTATCACCCGGGCG
AAGGCAAGCGCGCATCGCAGACGACGCTCGGCAAGCCGATCAGCCGCGCCGCGCCGATGACGGATCTCGGCGGCGGGCGC
AGCGGCGTGCCGCCGCTGCCGCCGTACATGCAGGCCGCGCAGTCGGGCGACGGCGCGGCCATGCCGGCGGGCGTGCCCGG
CGTGCCCGGCGGCGATCCGCGCCCGAGCGGCATGGTCGCCGCCGCGATCGCGAATCCGGGCGCGGCGCGCGCGCCGGGCG
GCGGGATGCCCGATGCGAACGGCGTGCCCGCCGGCGCGGGCGACGCGGCGGATCTGCCGGTGATCCAGGCCGATCCGCGC
ACGAACTCGATCCTCGTGCGCGACGTGCCCGAGCACATGGCGCAGTATCCGGACCTGATCGCGCTCCTCGACGTGAAGCC
GCGCCTGATCGAGATCGAGGCGCGCATCATCGAGATCGACGAAGGCGCGCTCAAGCAGCTCGGCGTCGACTGGCGCGCGC
ACAACAGCCATTTCGACCTGCAGACGGGCACGGGGCTCACGTCGCAGAACGGCTATGCGAACGGCACGCTGAACCCCACG
TTCGGCTCGATCACGCTCTCCGGCAACGATTCGGTCGGCGTGCCGGCGAGCCCGCTCGGGCTGTCGCTGACGGCTGTGCT
CGGCGACGCCGGCCGCTATCTGCTCGCGCGGATCAACGCGCTCGAATCGTCGAACCAGGCGCGCACCGACGCGAGCCCGA
AGGTCACGACGCTCGACAACGTCGAGGCGGTGATGGACAACAAGAAGCAGTTCTTCGTGCGCGTGGCGGGCTACACGTCG
GCCGACCTGTACAGCATCTCGACGGGCGTGTCGCTGCGCGTGCTGCCGATGGTCGTCGACGAAGGCGGGTGCACGCAGAT
CAAGCTCGACGTGCGGATCGTCGACGGCGAGCTGTCGCAGCAGACGGTCGACAACATTCCGGTGATCGTGTCGAACGAGA
TCAACACGCAGGCGTTCATCGAGCAGGGGCAGGCGTTGCTGATCGCGGGCTACAAGGTGGATGCGCGCTCGAGCACGCAA
TCGGGGGTGCCGGTGCTGTCGAAGCTGCCGCTCGTCGGCGCGCTGTTTCGTTCGACCGACAAGCAGAACAGCCACAGCGA
GCGGCTCTTTCTCGTGACGCCGAGAGTGATCGAGCCTTGA

Upstream 100 bases:

>100_bases
CGTGGCCGCCGCCGCGCGGCGCTGCGGTTAACTGCAGGGGTCTCCCATTCGCGGCGCGCGCCCGTCCGAGCGACGGCGCG
CGCCCCCACCGGACGGACCC

Downstream 100 bases:

>100_bases
GCGGGCCGCGCGCTCGCCGCGCCGCGCCGATCGGGCGGCGTGCGCGCGCGGGCGGTGCGTGATGCGTTCATCGGCCGAGA
TAGAGATAGAGCGACGCGAG

Product: type II/III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 599; Mature: 599

Protein sequence:

>599_residues
MKAKIPVLLSLLCSLASLSVDAAPIRWRSADIQYAAEGKDVKDVLRDLAASQNIAANVAPGVSGAVSGKMKMSPQRFLDT
LAASFGFVWYYDGTVLYVTPASDMKSTLVKLDHANTGDLRDLLEQMKVADSRYPITYNAQQRTALVAGPARYVELVTSVA
ARLDENSARTGGTQIRVFSLKHAWAADRDVNVDGTAVSMPGVASLLNRMYHPGEGKRASQTTLGKPISRAAPMTDLGGGR
SGVPPLPPYMQAAQSGDGAAMPAGVPGVPGGDPRPSGMVAAAIANPGAARAPGGGMPDANGVPAGAGDAADLPVIQADPR
TNSILVRDVPEHMAQYPDLIALLDVKPRLIEIEARIIEIDEGALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPT
FGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTS
ADLYSISTGVSLRVLPMVVDEGGCTQIKLDVRIVDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQ
SGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP

Sequences:

>Translated_599_residues
MKAKIPVLLSLLCSLASLSVDAAPIRWRSADIQYAAEGKDVKDVLRDLAASQNIAANVAPGVSGAVSGKMKMSPQRFLDT
LAASFGFVWYYDGTVLYVTPASDMKSTLVKLDHANTGDLRDLLEQMKVADSRYPITYNAQQRTALVAGPARYVELVTSVA
ARLDENSARTGGTQIRVFSLKHAWAADRDVNVDGTAVSMPGVASLLNRMYHPGEGKRASQTTLGKPISRAAPMTDLGGGR
SGVPPLPPYMQAAQSGDGAAMPAGVPGVPGGDPRPSGMVAAAIANPGAARAPGGGMPDANGVPAGAGDAADLPVIQADPR
TNSILVRDVPEHMAQYPDLIALLDVKPRLIEIEARIIEIDEGALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPT
FGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTS
ADLYSISTGVSLRVLPMVVDEGGCTQIKLDVRIVDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQ
SGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP
>Mature_599_residues
MKAKIPVLLSLLCSLASLSVDAAPIRWRSADIQYAAEGKDVKDVLRDLAASQNIAANVAPGVSGAVSGKMKMSPQRFLDT
LAASFGFVWYYDGTVLYVTPASDMKSTLVKLDHANTGDLRDLLEQMKVADSRYPITYNAQQRTALVAGPARYVELVTSVA
ARLDENSARTGGTQIRVFSLKHAWAADRDVNVDGTAVSMPGVASLLNRMYHPGEGKRASQTTLGKPISRAAPMTDLGGGR
SGVPPLPPYMQAAQSGDGAAMPAGVPGVPGGDPRPSGMVAAAIANPGAARAPGGGMPDANGVPAGAGDAADLPVIQADPR
TNSILVRDVPEHMAQYPDLIALLDVKPRLIEIEARIIEIDEGALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPT
FGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTS
ADLYSISTGVSLRVLPMVVDEGGCTQIKLDVRIVDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQ
SGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP

Specific function: Necessary for both basic pathogenicity and the induction of the hypersensitive response in resistant plants. Could be a part of a specific transport apparatus or a secretion apparatus that is required for pathogenicity. Hrp proteins may form a complex (tu

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=288, Percent_Identity=27.0833333333333, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI87082242, Length=631, Percent_Identity=22.5039619651347, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR004845
- InterPro:   IPR003522 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 63067; Mature: 63067

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKIPVLLSLLCSLASLSVDAAPIRWRSADIQYAAEGKDVKDVLRDLAASQNIAANVAP
CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCHHHHHHHHHCCCCCEEECCC
GVSGAVSGKMKMSPQRFLDTLAASFGFVWYYDGTVLYVTPASDMKSTLVKLDHANTGDLR
CCCCCCCCCEECCHHHHHHHHHHHCCEEEEECCEEEEEECCHHHHHHHEEECCCCCCHHH
DLLEQMKVADSRYPITYNAQQRTALVAGPARYVELVTSVAARLDENSARTGGTQIRVFSL
HHHHHHHHCCCCCCEEECCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
KHAWAADRDVNVDGTAVSMPGVASLLNRMYHPGEGKRASQTTLGKPISRAAPMTDLGGGR
ECCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCC
SGVPPLPPYMQAAQSGDGAAMPAGVPGVPGGDPRPSGMVAAAIANPGAARAPGGGMPDAN
CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
GVPAGAGDAADLPVIQADPRTNSILVRDVPEHMAQYPDLIALLDVKPRLIEIEARIIEID
CCCCCCCCCCCCCEEECCCCCCEEEEECCHHHHHCCCCEEEEECCCCEEEEEEEEEEEEC
EGALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLG
CHHHHHHCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
LSLTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTS
EEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHCCCEEEEEEEECCCC
ADLYSISTGVSLRVLPMVVDEGGCTQIKLDVRIVDGELSQQTVDNIPVIVSNEINTQAFI
CCEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCHHHHCCCCEEEECCCCHHHHH
EQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP
HCCCEEEEEEEEECCCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MKAKIPVLLSLLCSLASLSVDAAPIRWRSADIQYAAEGKDVKDVLRDLAASQNIAANVAP
CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCHHHHHHHHHCCCCCEEECCC
GVSGAVSGKMKMSPQRFLDTLAASFGFVWYYDGTVLYVTPASDMKSTLVKLDHANTGDLR
CCCCCCCCCEECCHHHHHHHHHHHCCEEEEECCEEEEEECCHHHHHHHEEECCCCCCHHH
DLLEQMKVADSRYPITYNAQQRTALVAGPARYVELVTSVAARLDENSARTGGTQIRVFSL
HHHHHHHHCCCCCCEEECCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
KHAWAADRDVNVDGTAVSMPGVASLLNRMYHPGEGKRASQTTLGKPISRAAPMTDLGGGR
ECCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCC
SGVPPLPPYMQAAQSGDGAAMPAGVPGVPGGDPRPSGMVAAAIANPGAARAPGGGMPDAN
CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
GVPAGAGDAADLPVIQADPRTNSILVRDVPEHMAQYPDLIALLDVKPRLIEIEARIIEID
CCCCCCCCCCCCCEEECCCCCCEEEEECCHHHHHCCCCEEEEECCCCEEEEEEEEEEEEC
EGALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLG
CHHHHHHCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
LSLTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTS
EEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHCCCEEEEEEEECCCC
ADLYSISTGVSLRVLPMVVDEGGCTQIKLDVRIVDGELSQQTVDNIPVIVSNEINTQAFI
CCEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCHHHHCCCCEEEECCCCHHHHH
EQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP
HCCCEEEEEEEEECCCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1472717 [H]