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The map label for this gene is pecT [H]

Identifier: 126446239

GI number: 126446239

Start: 283595

End: 284512

Strand: Reverse

Name: pecT [H]

Synonym: BMA10247_A0323

Alternate gene names: 126446239

Gene position: 284512-283595 (Counterclockwise)

Preceding gene: 126445654

Following gene: 126445853

Centisome position: 12.09

GC content: 74.51

Gene sequence:

>918_bases
ATGAACAGACATCAATGTACATTTCATCCATTTCCATTTGAAATGAAACCACTCGATCTCGACGCCGTTCGCGCGTTCGT
GCTCGTCGCCGAACTCGCGAGCTTCACGCGCGCCGCCGACGCGCTCGGCACCACGCAATCCGCCGTCAGCCTGAAGCTCA
AGCGGCTCGAGGCGCAGCTCGGCAAGCCGCTGCTCGAGCGCACGCCGCGACGCGTGACGCTCGCCGCCGTCGGCGCCGCG
TTCCTGCCCGCCGCGCGCGAGCTGCTCGACGCGCACGAGCGTGCGCTCGCCGCGCTGTCGTCCGCGCAGCGCAGGCTCGT
GATCGGCGTGAGCGAGCACGTCGCGGTGCCGGATCTGCCCGCCGTCCTCACCGGCTTGAACCGGCACGATCCGGGGCTCG
CGCTCGAGATGCATGTCGGAATGTCGGCCGGGCTGCTCGCGCAATACGACGAGCGGCGGCTCGACGCGGCGTTCGTGCGC
CACGAGCCCGGCGAAGACCCGCCGCGCGACGACGCGACGCTGCTTTTCACCGAGCCGCTCGCGTGGCTCGCCGCGCCCGG
CTGGACGCCGCGCGCGGACGAGCCGCTGCCGCTCGCGGTGCTGGCGGGCCCGTGCGGCGTGCGCGCGGCCGCGCTGCGCG
CGCTCGAGCGCGCCGGCGTGCGGTGGCGCGAGCGTTTCACGGGCGGCGGCGTCGCGGCCGTCGCGGCGGCGGCCGCCGCG
GGGCTCGCGGTGTGCCCGCTGGCCCGCCGCGTCGCGCCGCGCTCGCTCGTCGACGTCGGCGCGCGCTTGCGCCTGCCCGC
CTTGCCCGATTCGCAAGTCGCGCTGTATTCGCGGGTGCGCGACGCGCGCTCGATCGACACGCTGCGGCGCTTCGCCGACA
GCCTGGCGGGGCCGGCGCAATCGGCCGGACGCGAGTAG

Upstream 100 bases:

>100_bases
TTCGGCGGACTTGCCTTCGCGCAATGCGATACGGGTGAACGGCATCGGGTTTCTCCTTGACGGTTGGGACACGCATGCAG
CTTAGAAGCCCACATCTATA

Downstream 100 bases:

>100_bases
ACTGTCAGGTTTTCGTTGGCCGACCGGCCGCCTTTCGCGCGACTTTCGCACGCCTGCCGCCGCCGCATGAAACACGACGC
CCGCAAACACCTTCGCGCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MNRHQCTFHPFPFEMKPLDLDAVRAFVLVAELASFTRAADALGTTQSAVSLKLKRLEAQLGKPLLERTPRRVTLAAVGAA
FLPAARELLDAHERALAALSSAQRRLVIGVSEHVAVPDLPAVLTGLNRHDPGLALEMHVGMSAGLLAQYDERRLDAAFVR
HEPGEDPPRDDATLLFTEPLAWLAAPGWTPRADEPLPLAVLAGPCGVRAAALRALERAGVRWRERFTGGGVAAVAAAAAA
GLAVCPLARRVAPRSLVDVGARLRLPALPDSQVALYSRVRDARSIDTLRRFADSLAGPAQSAGRE

Sequences:

>Translated_305_residues
MNRHQCTFHPFPFEMKPLDLDAVRAFVLVAELASFTRAADALGTTQSAVSLKLKRLEAQLGKPLLERTPRRVTLAAVGAA
FLPAARELLDAHERALAALSSAQRRLVIGVSEHVAVPDLPAVLTGLNRHDPGLALEMHVGMSAGLLAQYDERRLDAAFVR
HEPGEDPPRDDATLLFTEPLAWLAAPGWTPRADEPLPLAVLAGPCGVRAAALRALERAGVRWRERFTGGGVAAVAAAAAA
GLAVCPLARRVAPRSLVDVGARLRLPALPDSQVALYSRVRDARSIDTLRRFADSLAGPAQSAGRE
>Mature_305_residues
MNRHQCTFHPFPFEMKPLDLDAVRAFVLVAELASFTRAADALGTTQSAVSLKLKRLEAQLGKPLLERTPRRVTLAAVGAA
FLPAARELLDAHERALAALSSAQRRLVIGVSEHVAVPDLPAVLTGLNRHDPGLALEMHVGMSAGLLAQYDERRLDAAFVR
HEPGEDPPRDDATLLFTEPLAWLAAPGWTPRADEPLPLAVLAGPCGVRAAALRALERAGVRWRERFTGGGVAAVAAAAAA
GLAVCPLARRVAPRSLVDVGARLRLPALPDSQVALYSRVRDARSIDTLRRFADSLAGPAQSAGRE

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=260, Percent_Identity=33.8461538461538, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1788887, Length=167, Percent_Identity=34.7305389221557, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693105, Length=78, Percent_Identity=42.3076923076923, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI48994962, Length=154, Percent_Identity=31.1688311688312, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790399, Length=198, Percent_Identity=31.8181818181818, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787806, Length=144, Percent_Identity=30.5555555555556, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32567; Mature: 32567

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRHQCTFHPFPFEMKPLDLDAVRAFVLVAELASFTRAADALGTTQSAVSLKLKRLEAQL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
GKPLLERTPRRVTLAAVGAAFLPAARELLDAHERALAALSSAQRRLVIGVSEHVAVPDLP
CCHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHH
AVLTGLNRHDPGLALEMHVGMSAGLLAQYDERRLDAAFVRHEPGEDPPRDDATLLFTEPL
HHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCH
AWLAAPGWTPRADEPLPLAVLAGPCGVRAAALRALERAGVRWRERFTGGGVAAVAAAAAA
HHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHH
GLAVCPLARRVAPRSLVDVGARLRLPALPDSQVALYSRVRDARSIDTLRRFADSLAGPAQ
HHHHHHHHHHHCHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
SAGRE
HCCCC
>Mature Secondary Structure
MNRHQCTFHPFPFEMKPLDLDAVRAFVLVAELASFTRAADALGTTQSAVSLKLKRLEAQL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
GKPLLERTPRRVTLAAVGAAFLPAARELLDAHERALAALSSAQRRLVIGVSEHVAVPDLP
CCHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHH
AVLTGLNRHDPGLALEMHVGMSAGLLAQYDERRLDAAFVRHEPGEDPPRDDATLLFTEPL
HHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCH
AWLAAPGWTPRADEPLPLAVLAGPCGVRAAALRALERAGVRWRERFTGGGVAAVAAAAAA
HHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHH
GLAVCPLARRVAPRSLVDVGARLRLPALPDSQVALYSRVRDARSIDTLRRFADSLAGPAQ
HHHHHHHHHHHCHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
SAGRE
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]