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The map label for this gene is yecD [H]

Identifier: 126445989

GI number: 126445989

Start: 1864217

End: 1864768

Strand: Reverse

Name: yecD [H]

Synonym: BMA10247_A1936

Alternate gene names: 126445989

Gene position: 1864768-1864217 (Counterclockwise)

Preceding gene: 126446830

Following gene: 126446510

Centisome position: 79.26

GC content: 70.83

Gene sequence:

>552_bases
ATGGCGAGGGCGGCGGTGATCGTGGTGGACATGCAGCGCGGGCTGCTGCAGCGGGCGAAGCCCGCGCATCGGCTCGACGA
GGTCGTCGCGGGCATCAACCGGCTGACGGCGGCGGCGCGCGCGGCGGGCGCGCCCGTCTGTTTCGTGCAGCACGACGGCG
GCGCGGACGACGACGTCGTGCCCGGCACGCCCGGTTGGCGGCTGCACGCGGAGCTCACGTGCGCCGACGCCGACTGGCGA
ATCCGCAAGCGCGCAAGCGATGCGTTCCACGGCACGCCGCTTGCCGCGCAACTTGCCGCGCACGGCGTTGACGCGGTCGT
GATCTGCGGCTACGCGTCGGAATTCTGCGTCGATTCGGCGGCGCGCCGCGCGGCGCTCCTCGGCTATCGAACGACGGTCG
TCTCCGATCTGCACACGACGAACGATCGCGCTCACCTGAGCGCGGCGCAAATCGTCGCGCATCACAATTTCATCTGGAGC
CACTGTTCGTTCTCGGGCAACGGCGTTGCGCCGCGGCCGCTCGACGAGGTGATCGCCGCGGAGTTCGCATGA

Upstream 100 bases:

>100_bases
GTTCGGCGGCGTCGACGCCGACGCCGATGCCGATGTCGGTGCAGGCGTCGATGCCGGCGGCCGGGGCGAATGGCTGAACG
ATGAAAACGGAGGGCGATGC

Downstream 100 bases:

>100_bases
CCGTCAAGGCAGTCGTATTCGATTTCGGCGGCGTGCTGATCGACTGGAGCCCCGAGTATCTGTACCGGAAACTGATTCCC
GATGAAGCCGAGCGGCGCTG

Product: isochorismatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MARAAVIVVDMQRGLLQRAKPAHRLDEVVAGINRLTAAARAAGAPVCFVQHDGGADDDVVPGTPGWRLHAELTCADADWR
IRKRASDAFHGTPLAAQLAAHGVDAVVICGYASEFCVDSAARRAALLGYRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWS
HCSFSGNGVAPRPLDEVIAAEFA

Sequences:

>Translated_183_residues
MARAAVIVVDMQRGLLQRAKPAHRLDEVVAGINRLTAAARAAGAPVCFVQHDGGADDDVVPGTPGWRLHAELTCADADWR
IRKRASDAFHGTPLAAQLAAHGVDAVVICGYASEFCVDSAARRAALLGYRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWS
HCSFSGNGVAPRPLDEVIAAEFA
>Mature_182_residues
ARAAVIVVDMQRGLLQRAKPAHRLDEVVAGINRLTAAARAAGAPVCFVQHDGGADDDVVPGTPGWRLHAELTCADADWRI
RKRASDAFHGTPLAAQLAAHGVDAVVICGYASEFCVDSAARRAALLGYRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWSH
CSFSGNGVAPRPLDEVIAAEFA

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

Organism=Escherichia coli, GI87081992, Length=146, Percent_Identity=35.6164383561644, Blast_Score=80, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 19422; Mature: 19291

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAAVIVVDMQRGLLQRAKPAHRLDEVVAGINRLTAAARAAGAPVCFVQHDGGADDDVV
CCCEEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
PGTPGWRLHAELTCADADWRIRKRASDAFHGTPLAAQLAAHGVDAVVICGYASEFCVDSA
CCCCCCEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHH
ARRAALLGYRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWSHCSFSGNGVAPRPLDEVIAA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHH
EFA
CCC
>Mature Secondary Structure 
ARAAVIVVDMQRGLLQRAKPAHRLDEVVAGINRLTAAARAAGAPVCFVQHDGGADDDVV
CCEEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
PGTPGWRLHAELTCADADWRIRKRASDAFHGTPLAAQLAAHGVDAVVICGYASEFCVDSA
CCCCCCEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHH
ARRAALLGYRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWSHCSFSGNGVAPRPLDEVIAA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHH
EFA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]